Polymer - OmicsDI

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Unknown (31138)
Genomics (1015)
Transcriptomics (899)
Proteomics (273)
Metabolomics (67)
Other (53)
Models (7)
Clinical (4)
Methylation profiling (2)
Multiomics (1)

Organisms

Homo sapiens (348)
Mus musculus (262)
Arabidopsis thaliana (75)
Saccharomyces cerevisiae (58)
Rattus norvegicus (29)
Drosophila melanogaster (23)
Gallus gallus (13)
Oryza sativa (12)
Danio rerio (11)
Mycobacterium tuberculosis (10)
Mycobacterium tuberculosis H37Rv (10)
Schizosaccharomyces pombe (9)
Vibrio cholerae (9)
Escherichia coli (7)
Candida albicans (7)
Triticum aestivum (6)
Sus scrofa (6)
Zea mays (6)
Apis mellifera (5)
Medicago truncatula (5)
Apostichopus japonicus (4)
Brassica napus (4)
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (4)
Tetrahymena thermophila (3)
Gossypium hirsutum (3)
Neurospora crassa (3)
Glycine max (3)
Macrobrachium nipponense (2)
Pinus pinaster (2)
Papio hamadryas (2)

Organisms

leaf litter metagenome (395)
Homo sapiens (73)
Mus musculus (68)
Drosophila melanogaster (9)
biofilm metagenome (9)
Rattus norvegicus (6)
Gallus gallus (6)
soil metagenome (6)
plastic metagenome (4)
Caenorhabditis elegans (4)
Lactiplantibacillus plantarum (3)
Staphylococcus aureus (3)
Halopseudomonas aestusnigri (2)
compost metagenome (2)
Oryctolagus cuniculus (2)
wastewater metagenome (2)
groundwater metagenome (2)
Solanum lycopersicum (2)
aquatic metagenome (2)
Escherichia coli (2)
Bacteria (2)
Arabidopsis thaliana (2)
Saccharomyces cerevisiae (2)
Bacillus cereus (2)
Pleurotus ostreatus PC15 (1)
Alishewanella aestuarii B11 (1)
Pseudomonas sp. AKS31 (1)
Halomonas smyrnensis AAD6 (1)
Phlebicolorata brevispora (1)
Caulobacter vibrioides CB15 (1)

Repository

ENA (921)
biostudies-arrayexpress (857)
geo (189)
pride (188)
MetaboLights (60)
MassIVE (46)
iProX (22)
EGA (12)
jPOST (8)
BioModels (7)
GNPS (7)
PanoramaPublic (3)
PeptideAtlas (1)

Tissue

Cell culture (35)
Epithelial cell (14)
Blood serum (10)
Brain (8)
Blood plasma (6)
Plant cell (6)
Cell suspension culture (5)
Fibroblast (5)
Heart (5)
Stem cell (5)
HeLa cell (4)
Permanent cell line cell (4)
Cerebrospinal fluid (3)
Whole body (3)
Blood (2)
Blood cell (2)
Blood platelet (2)
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Early embryonic cell (2)
Extracellular vesicle (2)
Heart valve (2)
Hepatocyte (2)
Kidney (2)
Liver (2)
Monocyte (2)
Neutrophil (2)
Photosynthetic cell (2)
Primary cell (2)
Seed (2)
Others (1)

Disease

Breast cancer (7)
Disease free (6)
Normal (4)
Wounds and Injuries (3)
Azoospermia (2)
Infective endocarditis (2)
Intestinal disease (2)
HPV positive (1)
Not applicable (1)
Colon cancer Dukes C (1)
Mock inoculated (1)
Squamous cell carcinoma has accession C0007137 in DiseaseStateDatabase NCI_Thesaurus (1)
Infected with Influenza A/WSN/33 (H1N1) (1)
IV (1)
Primary tumor (1)
Bladder tumour (1)
Sham surgery (1)
Colon cancer (1)
Head and neck squamous cell carcinoma (1)
Diabetes mellitus (1)
Chronic lymphocytic leukemia (1)
Sarcoma (1)
Reference (1)
VSV infection (1)
Prostate carcinoma (1)
Neuroblastoma (1)
The advanced and recurrent colorectal cancer of having the refractory or intolerance of existing chemotherapy (1)
Colorectal cancer (1)
Adenoma (1)
Colorectal Neoplasms (1)

Technology Type

Mass Spectrometry (188)
Shotgun proteomics (116)
Mass spectrometry (40)
Bottom-up proteomics (36)
Data-dependent acquisition (22)
Mass spectrometry assay (16)
Affinity purification coupled with mass spectrometry proteomics (14)
Data-independent acquisition (11)
NMR spectroscopy (5)
SWATH MS (5)
Top-down proteomics (5)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
Gel-based experiment (3)
DiaPASEF (2)
Illumina HiSeq 2000, NextSeq 500, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, ILLUMINA (1)
All-ion fragmentation (1)
HDMSE (1)
Metaproteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (22)
NextSeq 500 (19)
NextSeq 550 (13)
Illumina HiSeq 2000 (13)
Illumina HiSeq 2500 (11)
ArrayWoRx Biochip Reader [Applied Precision] (9)
Illumina HiSeq 4000 (8)
NextSeq 2000 (7)
Illumina MiSeq (5)
Illumina NovaSeq X (4)
DNBSEQ-G400 (4)
ScanArray Express HT [PerkinElmer] (3)
GenePix 4000B [Axon Instruments] (3)
Sony SH800 (2)
Illumina Genome Analyzer IIx (2)
Axon- GenePix4000B (2)
Scanning hardware (2)
Illumina HiSeq 1500 (2)
Maxwell® RSC 48 Instrument (Promega, AS8500) (1)
Transrectal ultrasound-guided systematic sampling of prostate tissue (TRUS biopsy) (1)
Eppendorf EpMotion 5073m pipetting robot (1)
Rstudio (1)
Novogene NGS DNA Library Prep Set (Cat No.PT004) (1)
TruSeq Nano DNA Low Throughput library preparation Kit (Illumina, San Diego, USA, REF#20015964) (1)
PureGene DNA extraction Kit (Qiagen) (1)
PEG8000, NaCl, DNase, Benzonase, EDTA, SDS (1)
Microarray scanner system (1)
Affymetrin GeneTitan MC (1)
BioChipReader (1)
Agilent Scanner (1)

Publication Date

2013 (140)
2015 (102)
2014 (100)
2026 (95)
2010 (88)
2025 (84)
2024 (81)
2023 (73)
2011 (73)
2012 (72)
2016 (67)
2022 (64)
2009 (55)
2021 (54)
2020 (53)
2008 (38)
2019 (36)
2018 (35)
2017 (23)
2007 (20)
2006 (15)
2005 (10)
2004 (2)

UNIPROT ID/AC

P42225 (2)
A0A087WTX5 (1)
A0A087WVW2 (1)
A0A087WYL9 (1)
A0A087X130 (1)
A0A087X1V9 (1)
A0A0A0MS07 (1)
A0M8Q6 (1)
A2NUT2 (1)
A2NYU9 (1)
A4F255 (1)
B4DPR2 (1)
B4DRF2 (1)
B7Z556 (1)
B9A064 (1)
C9JV77 (1)
D6RE86 (1)
E7ETH0 (1)
E7ETN3 (1)
E9PFZ2 (1)
H0Y300 (1)
H7C5H1 (1)
H7C5R1 (1)
O43866 (1)
O95973 (1)
O95978 (1)
P00450 (1)
P00734 (1)
P00736 (1)
P00738 (1)

CHEBI ID

CHEBI:16335 (21)
CHEBI:15428 (19)
CHEBI:15741 (19)
CHEBI:30769 (19)
CHEBI:17568 (18)
CHEBI:17895 (17)
CHEBI:16708 (16)
CHEBI:6650 (16)
CHEBI:7916 (16)
CHEBI:17750 (16)
CHEBI:18012 (16)
CHEBI:32816 (16)
CHEBI:16027 (16)
CHEBI:17596 (16)
CHEBI:18257 (15)
CHEBI:16750 (15)
CHEBI:16865 (15)
CHEBI:18211 (15)
CHEBI:16761 (15)
CHEBI:17368 (15)
CHEBI:26271 (14)
CHEBI:16695 (14)
CHEBI:17533 (14)
CHEBI:17748 (14)
CHEBI:28044 (14)
CHEBI:15891 (14)
CHEBI:16704 (14)
CHEBI:30915 (14)
CHEBI:27897 (14)
CHEBI:20067 (14)

Metabolite Name

Uracil (15)
Adenosine (14)
L-Phenylalanine (14)
Adenine (13)
Uridine (13)
L-Valine (12)
Ornithine (11)
Guanosine (11)
L-Tyrosine (11)
Inosine (11)
Thymine (10)
L-Proline (10)
L-Threonine (10)
Pantothenic acid (10)
Creatine (10)
L-Isoleucine (10)
Hypoxanthine (10)
ADP (9)
Maleic acid (9)
Guanine (9)
Phenylalanine (9)
Creatinine (9)
L-Leucine (9)
Heptadecanoic acid (8)
Glycine (8)
Betaine (8)
Glutathione (8)
Choline (8)
Tyrosine (8)
Palmitic acid (8)

First Public Date

2018 (421)
2026 (102)
2025 (79)
2024 (61)
2020 (42)
2023 (40)
2022 (37)
2019 (32)
2021 (29)
2013 (23)
2017 (17)
2014 (14)
2016 (12)
2015 (11)
2011 (1)

Modelling Approach

Ordinary differential equation model (3)
Constraint-based model (3)
Computational model (1)

Study status

Withdrawn (1)
Not provided (1)
Recruiting (1)
Completed (1)

Lab affiliation

Department of Biochemistry, Sapporo Medical University School of Medicine (6)
Department of Biochemistry and Molecular Biology, University of Calgary, Alberta, Canada; Department of Physiology and Pharmacology, University of Calgary, Alberta, Canada; The Hotchkiss Brain Institute, University of Calgary, Alberta, Canada; McCaig Institute for Bone and Joint Health, University of Calgary, Alberta, Canada (4)
Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), 291 Daehak-ro, Yuseong-gu, Daejeon 34141, Republic of Korea (3)
Professor, Microbiology, Immunology, and Pathology Mycobacteria Research Laboratories Scientific Director, Rocky Mountain Regional Biocontainment Laboratory Editor-in-chief, BMC Mycobacteria (3)
ETH Zurich, Department of Biology, Institute of Molecular Health Sciences (2)
Functional Proteomics Lab, Dpt. Life Sciences, University of Siena, Italy (2)
Mossakowski Medical Research Institute, Polish Academy of Sciences (2)
Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (2)
State Key Laboratory of Genetic Engineering, Department of Biochemistry, School of Life Sciences, Fudan University, Shanghai 200438, China (2)
Toronto General Hospital, University of Toronto, Toronto, Canada (2)
1Department of Biomedical Sciences, University of Copenhagen, Copenhagen, Denmark (1)
1Department of Biotechnology and Biomedicine, Technical University of Denmark, DK-2800 Kongens Lyngby, Denmark (1)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (1)
Apte Lab, departemnt of Biomedical Engineering, Lerner Research Institute, Cleveland Clinic (1)
Associate Research Professor, Institut de recherches cliniques de Montréal (IRCM) Professeure agrégée, Département de biochimie et médecine moléculaire, Université de Montréal Associate Professor, Division of Experimental Medicine, McGill University (1)
BOKU University, Department of Agricultural Sciences, Institute of Environmental Biotechnology (1)
Bavarian Center for Biomolecular Mass Spectrometry at Klinikum Rechts der Isar, TUM School of Medicine and Health, Technical University of Munich, Munich, Germany (1)
Bioanalytical Mass Spectrometry Group, Max-Planck-Institute for Multidisciplinary Sciences, Göttingen, Germany; Institute for Clinical Chemistry, University Medical Center Göttingen, Göttingen, Germany (1)
Biological and Environmental Proteomics, Institute of Biomedical Research of Barcelona, Spanish National Research Council (IIBB-CSIC/IDIBAPS), Rosellón 161, E-08036 Barcelona, Spain. (1)
CEA-Marcoule, ProGénoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Cèze, France (1)
Canada Research Chair in Proteomics and Systems Biology, Faculty of Dentistry, Department of Oral Biological and Medical Sciences, University of British Columbia (1)
Cancer Early Detection Advanced Research Center, Knight Cancer Institute, Department of Molecular & Medical Genetics, Oregon Health & Science University, Portland, OR 97239, U.S.A. (1)
Center for Blood Research, Life Sciences Centre, University of British Columbia; Vancouver, British Columbia, Canada, V6T 1Z3 (1)
Center for Blood Research, Life Sciences Centre, University of British Columbia; Vancouver, British Columbia, Canada, V6T 1Z3. (1)
Center for Blood Research, UBC, Canada (1)
Center for Blood Research, UBC, Vancouver BC (1)
Center for blood research, UBC, Canada (1)
Center for blood research, University of British Columbia,Vancouver BC, Canada (1)
Centre for Blood Research, Department of Oral Biological and Medical Sciences, University of British Columbia, Vancouver, BC, Canada (1)
Centre for Blood Research, Department of Oral Biological and Medical Sciences, University of British Columbia, Vancouver, BC, Canada. (1)

Keyword

Colorectal cancer, DAVANAT, colon cancer, 5-FU (1)
Adenoma, polyp, colonoscopy. (1)
Leucovorin (1)
Bevacizumab (1)
Fluorouracil (1)

IsPrivate

False (7)

Submitter Keywords

Manuscript Accepted (2)
Ersilia (1)
FAIR-AIML (1)
Machine Learning Model (1)
FROG (1)

Classification

bacteria (13)
fungi (4)

Modification

N6-dimethyl-L-lysine (3)
4x(2)H labeled dimethylated residue (2)
4-tetrahydrothiazine-3-carboxylic acid (1)
4x(2)H labeled dimethylated L-lysine (1)

Study type

Transcription profiling by array (530)
RNA-seq of coding RNA (98)
ChIP-seq (42)
RNA-seq of non coding RNA (36)
Other (21)
Methylation profiling by array (16)
ChIP-chip by array (12)
RNA-seq of coding RNA from single cells (12)
Unknown experiment type (10)
DNA-seq (10)
Methylation profiling by high throughput sequencing (10)
MicroRNA profiling by array (9)
RNA-seq of total RNA (7)
ChIP-chip by tiling array (6)
Comparative genomic hybridization by array (5)
High-throughput sequencing (4)
Cell line - High-throughput sequencing (2)
Transcription profiling by tiling array (2)
RNAi profiling by array (2)
Genotyping by array (2)
Antigen profiling (2)
MicroRNA profiling by high throughput sequencing (2)
ATAC-seq (2)
Genotyping by high throughput sequencing (2)
GRO-seq (1)
Two-color microarray (1)
Whole chromosome random sequencing (1)
Animal - High-throughput sequencing (1)
CLIP-seq (1)
Transcription profiling by RT-PCR (1)

Release Date

2022 (3831)
2025 (3557)
2023 (3532)
2021 (3148)
2024 (2956)
2020 (2793)
2019 (2362)
2018 (2033)
2017 (1501)
2016 (1240)
2015 (959)
2014 (690)
2026 (646)
2013 (628)
2012 (473)
2011 (396)
2010 (380)
2009 (285)
2008 (230)
2007 (108)
2006 (78)
2005 (49)
2004 (29)
2003 (22)
2002 (20)
1998 (15)
2001 (13)
1999 (10)
2000 (6)
1997 (1)

Location

Japan (2)
Israel (1)
United Kingdom (1)

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Nutrient depletion and systems-wide metabolic shifting in polymer-producing wastewater bacterium

Inorganic nutrient deficiency stimulates polymer synthesis in bacterial producers relevant to wastewater treatment and biotechnology, but the metabolic mechanisms are poorly understood. Here, using a quantitative multi-omics analysis of the wastewater isolate Comamonas testosteroni durin...

2026-09-09 | MTBLS12449 | MetaboLights

Human Bone Marrow Stromal Cells cultured on polymer scaffolds with varied properties

Microarray analysis was used to evaluate expression differences from a single donor human bone marrow stromal cells (hBMSCs) as a function of varied polymer-based tissue engineering scaffolds. The results revealed that gene expression patterns of hBMSCs grouped according to scaffold. A library of sc...

ORGANISM(S): Homo sapiens

2013-11-01 | E-GEOD-50743 | biostudies-arrayexpress

Polymer library for DNA storage

DNA digital information storage in polymer fibers

PRJEB91149 | ENA

Polymer biochar embedding microbial agent

Polymer biochar embedding microbial agent Raw sequence reads

PRJNA1259683 | ENA

Chaotropic Ions Mediated Polymer Gelation for Thermal Management.

Not available

S-EPMC11348148 | biostudies-literature

A smart polymer for sequence-selective binding, pulldown, and release of DNA targets

PRJNA631284 | ENA

Natural polymer

Natural polymer Genome sequencing and assembly

PRJNA1259385 | ENA

Sequential and one-pot post-polymerization modification reactions of thiolactone-containing polymer brushes.

Not available

S-EPMC7047779 | biostudies-literature

Macroscopic Viscosity of Polymer Solutions from the Nanoscale Analysis.

Not available

S-EPMC8159165 | biostudies-literature

Synergistic Therapeutic Effects of D-Mannitol-Cerium-Quercetin (Rutin) Coordination Polymer Nanoparticles on Acute Lung Injury

In our latest study, we pioneered the use of D-Mannitol-Cerium-Quercetin/Rutin coordination polymer nanoparticles (MCQ/R NPs) as a potential remedy for ALI. our in vivo studies with LPS-induced ALI mice showed significant mitigation of lung tissue inflammation. This groundbreaking research presents ...

ORGANISM(S): Mus Musculus

2024-04-10 | PXD051350 |

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33463 Results

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