Post-translational modification (ptm)

Show results for

Proteomics (763)
Unknown (755)
Transcriptomics (147)
Genomics (92)
Other (13)
Metabolomics (3)
Models (2)
Multiomics (1)

Organisms

Homo sapiens (136)
Mus musculus (57)
Arabidopsis thaliana (32)
Rattus norvegicus (11)
Escherichia coli (7)
Actinobacillus pleuropneumoniae (3)
Caenorhabditis elegans (3)
Candida albicans (3)
Actinobacillus pleuropneumoniae serovar 1 str. 4074 (2)
Streptomyces coelicolor A3(2) (2)
Danio rerio (2)
Saccharomyces cerevisiae (2)
Drosophila melanogaster (2)
Xenopus laevis (2)
Nannochloropsis oceanica (2)
Nitrobacter winogradskyi (1)
Candidatus Liberibacter solanacearum (1)
Camponotus floridanus (1)
Rhodopseudomonas palustris (1)
Bacteroides thetaiotaomicron (1)
Bacillus subtilis subsp. subtilis str. 168 (1)
Aspergillus fumigatus (1)
Zea mays (1)
Schizosaccharomyces pombe (1)
Klebsiella pneumoniae (1)
Hordeum vulgare (1)
Oncorhynchus mykiss (1)
Pseudomonas aeruginosa (1)
Corynebacterium glutamicum ATCC 13032 (1)
Sus scrofa (1)

Organisms

Homo sapiens (24)
Mus musculus (6)
Nannochloropsis oceanica (2)
Neurospora crassa (2)
Xenopus laevis (2)
Escherichia coli (2)
Rattus norvegicus (2)
Arabidopsis thaliana (2)
Ginkgo biloba (1)
Saccharomyces cerevisiae (1)
Solanum lycopersicum (1)
Oryza sativa Japonica Group (1)

Repository

pride (481)
MassIVE (155)
biostudies-arrayexpress (141)
iProX (64)
ENA (56)
geo (46)
jPOST (26)
PeptideAtlas (18)
PanoramaPublic (12)
GPMDB (10)
PAXDB (6)
MetaboLights (3)
BioModels (2)

Tissue

Cell culture (108)
Brain (38)
Liver (29)
Epithelial cell (21)
Permanent cell line cell (19)
Whole body (19)
Others (18)
Leaf (16)
Blood (12)
Plant cell (12)
Heart (10)
Blood plasma (9)
Embryonic stem cell (8)
HeLa cell (7)
Hepatocyte (7)
Lung (7)
Skin (7)
T cell (7)
Venom (7)
Fibroblast (6)
Root (6)
Shoot (6)
B cell (5)
Kidney (5)
Blood serum (4)
Skeletal muscle (4)
Blood cell (3)
Blood platelet (3)
Colon (3)
Diploid cell (3)

Disease

Alzheimer's disease (17)
Breast cancer (15)
Not Available (10)
Disease free (10)
Cervix carcinoma (5)
Malignant neoplasm of ovary (5)
Colon cancer (4)
Acute leukemia (3)
Aortic valve stenosis (2)
Brain cancer (2)
COVID-19 (2)
Cardiovascular system disease (2)
Diabetes mellitus (2)
Giardiasis (2)
Human immunodeficiency virus infectious disease (2)
Melanoma (2)
Osteosarcoma (2)
Plasmodium falciparum malaria (2)
None (1)
Acute gastroenteritis (1)
Arthritis (1)
Atherosclerosis (1)
Babesiosis (1)
Bacterial sepsis (1)
Bone marrow (1)
Cancer (1)
Cell type cancer (1)
Chikungunya (1)
Chronic lymphocytic leukemia (1)
Coronavirus infectious disease (1)

Technology Type

Mass Spectrometry (481)
Shotgun proteomics (294)
Bottom-up proteomics (90)
Data-dependent acquisition (57)
Affinity purification coupled with mass spectrometry proteomics (54)
Gel-based experiment (36)
Data-independent acquisition (28)
Top-down proteomics (13)
SWATH MS (12)
SRM/MRM (8)
All-ion fragmentation (5)
DiaPASEF (4)
MSE (4)
HDMSE (3)
Immunopeptidomics (3)
Mass spectrometry (2)
Mass spectrometry assay (1)
Affinity proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Glycoproteomics (1)
Mass spectrometry imaging (1)
RNA mass spectrometry (1)

Instrument Platform

Q Exactive (37)
Orbitrap Fusion Lumos (20)
Orbitrap Fusion (18)
LTQ Orbitrap Elite (18)
Q Exactive HF (15)
LTQ Orbitrap Velos (13)
Orbitrap Eclipse (13)
Instrument (10)
Orbitrap Exploris 480 (10)
Q Exactive Plus (9)
TripleTOF 5600 (7)
ZenoTOF 7600 (5)
LTQ Orbitrap XL (4)
Q TRAP (4)
TripleTOF 6600 (4)
Impact (3)
NextSeq 550 (2)
Illumina NovaSeq 6000 (2)
Illumina HiSeq 2000 (2)
Coulter Automated Workstation Biomek i7 Hybrid (1)
RNeasy 96-well plate kit (1)
The TLDA cards were analyzed on the Applied Biosystems 7900HT Real-Time PCR System. (1)
ScanArray Lite [PerkinElmer] (1)
Illumina Genome Analyzer IIx (1)
DNA Microarray Scanner BA [Agilent Technologies] (1)
G2565BA DNA microarray scanner [Agilent] (1)
GenePix 4000B [Axon Instruments] (1)
None (1)
Ion Torrent Proton (1)
NextSeq 2000 (1)

Publication Date

2025 (114)
2024 (107)
2022 (96)
2021 (84)
2023 (76)
2026 (74)
2020 (63)
2019 (50)
2017 (47)
2014 (41)
2018 (36)
2015 (35)
2011 (32)
2012 (24)
2016 (22)
2010 (15)
2013 (10)
2008 (9)
2009 (4)
2007 (3)
2005 (1)

UNIPROT ID/AC

1FEH1_WHEAT (3)
4565.Traes_1AL_00485097A.2 (3)
4565.Traes_1AL_014F29DA6.1 (3)
4565.Traes_1AL_0226AAD07.1 (3)
4565.Traes_1AL_08A2F5FA4.1 (3)
4565.Traes_1AL_0D04C9A2A.2 (3)
4565.Traes_1AL_0EF508307.1 (3)
4565.Traes_1AL_0F92F56F8.1 (3)
4565.Traes_1AL_121B2E9AD.1 (3)
4565.Traes_1AL_12797F0CA.1 (3)
4565.Traes_1AL_136EC2A52.1 (3)
4565.Traes_1AL_13DBBA098.1 (3)
4565.Traes_1AL_148233785.1 (3)
4565.Traes_1AL_1DC9BD199.1 (3)
4565.Traes_1AL_24185F4B6.1 (3)
4565.Traes_1AL_255FF48FC.2 (3)
4565.Traes_1AL_25D27E7E2.1 (3)
4565.Traes_1AL_262C70465.1 (3)
4565.Traes_1AL_262C704651.1 (3)
4565.Traes_1AL_2739910A5.1 (3)
4565.Traes_1AL_2BCF4423A.1 (3)
4565.Traes_1AL_2D4B01C64.1 (3)
4565.Traes_1AL_2D9BC6EE1.1 (3)
4565.Traes_1AL_2EF38544E.1 (3)
4565.Traes_1AL_319447519.1 (3)
4565.Traes_1AL_335CA216E.1 (3)
4565.Traes_1AL_387FCF604.1 (3)
4565.Traes_1AL_38B69CE81.1 (3)
4565.Traes_1AL_3B838C090.1 (3)
4565.Traes_1AL_3CF82DD08.2 (3)

ENSEMBL ID

ENSG00000170477 (14)
ENSG00000147251 (7)
ENSG00000247315 (4)
ENSG00000204131 (2)

CHEBI ID

CHEBI:36080 (1)
CHEBI:14737 (1)
CHEBI:15531 (1)
CHEBI:27266 (1)
CHEBI:16958 (1)
CHEBI:15468 (1)
CHEBI:7916 (1)
CHEBI:15346 (1)
CHEBI:15351 (1)

Metabolite Name

Methionin (1)
Malonyl-coa (1)
Acetyl-CoA (1)
Dephospho-CoA (1)
Pantothenate (1)
Histidine (1)
Leucine (1)
Coenzyme A (1)
Beta-alanine (1)
Cystine (1)
Arginine (1)
Lysine (1)
Tyrosine (1)
Threonine (1)
Proline (1)
Phenylalanine (1)
Isoleucine (1)
Glutamine (1)
Glucose (1)
Aspartic acid (1)

First Public Date

2025 (16)
2024 (10)
2026 (9)
2023 (7)
2020 (3)
2022 (2)
2021 (2)
2019 (2)
2018 (2)
2017 (2)
2014 (1)

Modelling Approach

Differential equation model (1)
Ordinary differential equation model (1)

Lab affiliation

University of Washington (9)
Department of Neurobiology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA (7)
Department of Molecular and Cellular Neurobiology, Center for Neurogenomics & Cognitive Research, Neuroscience Campus Amsterdam, VU University, Amsterdam, The Netherlands (5)
Agronomy College, Henan Agricultural University, China (3)
Centre for Proteome Research, Institute of Systems, Molecular & Integrative Biology, University of Liverpool, Crown Street, Liverpool, L69 7ZB, U.K (3)
Department of Immunobiology, College of Life Science and Technology, Jinan University, Guangzhou, China. (3)
Division of Cell Matrix Biology & Regenerative Medicine (L5) / Division of Cell Matrix Biology & Regenerative Medicine, University of Manchester (3)
Gansu Provincial Key Lab of Aridland Crop Science/ Gansu Agricultural University, Lanzhou, China (3)
Head of System Biology Lab. at Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency (3)
ProGenTomics, Laboratory of Pharmaceutical Biotechnology, Ghent University, B-9000 Ghent, Belgium (3)
Third Military Medical University (3)
University of Colorado Boulder (3)
1. Department of Biochemistry and Molecular Cell Biology, State Key Laboratory of Oncogenes and Related Genes, Shanghai Key Laboratory for Tumor Microenvironment and Inflammation, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Shanghai Jiao Tong University School of Medicine. (2)
Baylor College of Medicine (2)
Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC), Madrid, Spain (2)
College of Pharmacy, Research Institute of Pharmaceutical Sciences, Kyungpook National University (2)
Department of Medical Biochemistry and Biophysics, Karolinska Institutet, SE-171 65 Stockholm, Sweden (2)
Department of Pathology, Boston Children's Hospital, USA Department of Pathology, Harvard Medical School, USA (2)
Department of Surgery, University of Michigan Medical School, Ann Arbor, MI, USA (2)
Diabetes and Circadian Rhythms Department, Nestlé Institute of Health Sciences, CH-1015 Lausanne, Switzerland (2)
Division of Life Science, The Hong Kong University of Science and Technology, Hong Kong SAR, China (2)
Genome Biology Unit and Proteomics Core Facility, European Molecular Biology Laboratory, 69117 Heidelberg, Germany (2)
Huazhong Agricultural University (2)
Institute of Apicultural Research (2)
Institute of Plant and Microbial Biology, Academia Sinica (2)
Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, L69 3BX, United Kingdom (2)
Jiangsu Key Laboratory of Crop Genetics and Physiology/Co-Innovation Center for Modern Production Technology of Grain Crops, Key Laboratory of Plant Functional Genomics of the Ministry of Education, Yangzhou University, Yangzhou 225009, China (2)
Keck MS & Proteomics Resource Yale School of Medicine (2)
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences (2)
Lanzhou Veterinary Research Institute (2)

IsPrivate

False (2)

Model Flag

Non Kinetic (1)

Classification

bacteria (2)

Modification

N6 (10)
N6-dimethyl-L-lysine (7)
2x(15)N labeled L-lysine (2)
4x(2)H labeled dimethylated L-lysine (2)
4 (1)
4'-dihydroxyphenylalanine (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
4x(15)N labeled L-arginine (1)
Not available (1)

Study type

Transcription profiling by array (68)
ChIP-chip by tiling array (24)
RNA-seq of coding RNA (17)
ChIP-seq (15)
MicroRNA profiling by array (3)
Comparative genomic hybridization by array (2)
Other (2)
Methylation profiling by high throughput sequencing (2)
GRO-seq (1)
Unknown experiment type (1)
Cell line - One-color microarray (1)
Transcription profiling by RT-PCR (1)
DNA-seq (1)
Proteomic profiling by array (1)
CUT&RUN (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (94)
2021 (86)
2022 (85)
2023 (77)
2020 (72)
2024 (70)
2018 (53)
2019 (47)
2011 (46)
2015 (44)
2014 (44)
2017 (38)
2016 (35)
2012 (29)
2010 (22)
2013 (16)
2026 (14)
2008 (11)
2009 (6)
2006 (4)
2007 (3)

Previous page
1 / 178
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 178
Next page

Sort by:

Relevance

Page size

Environmental Conditions Elicit a Slow but Enduring Response of Histone Post-Translational Modifications in Mozambique Tilapia

Histone post-translational modifications (PTMs) are epigenetic marks that operate within the central dogma of molecular biology: upon an environmental stimulus, the histone PTMs surrounding DNA can be changed in a way that modifies gene expression, and, therefore, the abundance and composition of RN...

ORGANISM(S): Oreochromis Mossambicus

2024-12-10 | PXD042718 | panorama

Pathology tissue-quantitative mass spectrometry analysis to profile histone post-translational modification patterns in patient samples

Histone post-translational modifications (hPTMs) generate a complex combinatorial code that has been implicated with various pathologies, including cancer. Dissecting such a code in physiological and diseased states may be exploited for epigenetic biomarker discovery, but hPTM analysis in clinical s...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606) Mus Musculus (ncbitaxon:10090)

2016-08-25 | MSV000080100 | MassIVE

The NAE1-mediated Neddylation operates as an essential post-translational modification checkpoint for effector CD8+ T cells

Cells were lysed with TFA, and precipitated with cold acetone. The precipitates were transferred to E3filters and digestion was performed overnight with trypsin. The peptides were desalted with StageTips, and were analyzed on Eclipse Orbitrap with DIA mode. For MS1, the resolution was set to 120,00...

ORGANISM(S): Mus Musculus (ncbitaxon:10090)

2024-02-27 | MSV000094179 | MassIVE

How post-translational modification of nitrogenase is circumvented in Rhodopseudomonas palustris strains that produce hydrogen gas constitutively

Characterization of post-translational modification of nitrogenase in Rhodopseudomonas palustris strains that produce hydrogen gas constitutively. To characterize the effect of yeast extract as nitrogen source on gene expression under nitrogen fixing conditions, expression profiles of wild-type cell...

ORGANISM(S): Rhodopseudomonas palustris

2012-03-15 | E-GEOD-32292 | biostudies-arrayexpress

Posttranslational modification analysis of Histone H3t

Comprehensive posttranslational modifications in the testis-specific histone variant H3t protein validated in tagged knock-in mice.

ORGANISM(S): Mus Musculus (mouse)

2024-09-13 | PXD052428 | JPOST Repository

Systematic characterization of 21 post-translational modification using synthetic peptides

The data presented in this study in the - context of the ProteoemTools project - is based on the synthesis of about 5000 synthetic peptides carrying 21 different post-translational modifications to systematically characterize their chromatographic and mass spectrometric properties using multimodal L...