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ProteomicsMachine learning reveals limited contribution of trans-only encoded variants to the HLA-DQ immunopeptidome
HLA-DQ molecules can be formed as both cis and trans variants. So far, the progress for predicting HLA-DQ antigen presentation has been limited. In addition, the contribution of trans-only variants in shaping the HLA-DQ immunopeptidome remains largely unresolved. Here, we address these issues by int...
ORGANISM(S): Homo sapiens (Human) 
2023-05-10 | PXD040860 | Pride
Machine learning Immunopeptidome Hla-dq 
TranscriptomicsConcordance of deregulated mechanisms unveiled in underpowered experiments: PTBP1 knockdown case study
Background: Genome-wide transcriptome profiling generated by microarray and RNA-Seq often provides deregulated genes or pathways applicable only to larger cohort. On the other hand, individualized interpretation of transcriptomes is increasely pursued to improve diagnosis, prognosis, and patient tre...
ORGANISM(S): Homo sapiens 
2013-11-20 | E-GEOD-52493 | biostudies-arrayexpress
UnknownA wearable textile-based pneumatic energy harvesting system for assistive robotics.
Not available
S-EPMC9401630 | biostudies-literature
TranscriptomicsCorneal Gene Expression Analysis
Transplantation of amniotic membrane-expanded limbal epithelium (AMLE) in place of donor tissue grafts results in significantly improved outcomes for patients suffering from severe limbal stem cell deficiency; however the reasons for such superior results are unclear. The purpose of this study was t...
ORGANISM(S): Homo sapiens 
2014-10-02 | E-GEOD-56421 | biostudies-arrayexpress
UnknownAssessing drug and metabolite detection in liver tissue by UV-MALDI and IR-MALDESI mass spectrometry imaging coupled to FT-ICR MS.
Not available
S-EPMC4456684 | biostudies-literature
MetabolomicsIntegrated bacterial microbiome–metabolome profiling reveals coupled ecological and biochemical disruption in Cryptosporidium-infected neonatal dairy calves
A study looking at the effect of Cryptosporidiosis on calves at multiple French farms, on their metabolome and microbiome.
2026-09-02 | MTBLS15533 | MetaboLights
UnknownAtomically confined calcium in nitrogen-doped graphene as an efficient heterogeneous catalyst for hydrogen evolution.
Not available
S-EPMC8254045 | biostudies-literature
ProteomicsMaximizing Confidence and Sensitivity in Phosphoproteomics reveals novel targets of DNA damage signling Kinases
Proteome-wide analysis of phosphorylation events is a challenging, yet essential, task for the comprehensive and unbiased investigation of kinase action. Here we developed a phosphoproteomic approach in which quantitation consistency among reversed isotopically labeled samples is used as a central f...
ORGANISM(S): Saccharomyces Cerevisiae (ncbitaxon:4932) 
2020-01-24 | MSV000084839 | MassIVE
ProteomicsMaximizing Confidence and Sensitivity in quantitative Phosphoproteomics - Targets of Tel1 kinase
Proteome-wide analysis of phosphorylation events is a challenging, yet essential, task for the comprehensive and unbiased investigation of kinase action. Here we developed a phosphoproteomic approach in which quantitation consistency among reversed isotopically labeled samples is used as a central f...
ORGANISM(S): Saccharomyces Cerevisiae (ncbitaxon:4932) 
2020-01-30 | MSV000084871 | MassIVE
ProteomicsMaximizing Confidence and Sensitivity in quantitative Phosphoproteomics
Proteome-wide analysis of phosphorylation events is a challenging, yet essential, task for the comprehensive and unbiased investigation of kinase action. Here we developed a phosphoproteomic approach in which quantitation consistency among reversed isotopically labeled samples is used as a central f...
ORGANISM(S): Saccharomyces Cerevisiae (ncbitaxon:4932) 
2020-01-29 | MSV000084852 | MassIVE
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