Pr-10 - OmicsDI

Show results for

Unknown (1714)
Transcriptomics (735)
Genomics (157)
Proteomics (149)
Metabolomics (47)
Genomic (4)
Clinical (2)
Methylation profiling (1)

Organisms

Homo sapiens (362)
Mus musculus (224)
Arabidopsis thaliana (45)
Rattus norvegicus (31)
Drosophila melanogaster (16)
Oryza sativa (11)
Zea mays (10)
Danio rerio (8)
Sus scrofa (7)
Streptococcus pneumoniae D39 (7)
Bos taurus (7)
Gallus gallus (5)
Saccharomyces cerevisiae (5)
Apostichopus japonicus (4)
Boehmeria nivea (4)
Schistosoma mansoni (4)
Bacillus subtilis subsp. subtilis str. 168 (3)
Oncorhynchus mykiss (3)
Caenorhabditis elegans (3)
Canis lupus familiaris (3)
Macaca mulatta (3)
Macrobrachium nipponense (2)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (2)
Phytophthora ramorum (2)
Pimephales promelas (2)
Papio hamadryas (2)
Coprinopsis cinerea (2)
Medicago truncatula (2)
Trypanosoma brucei (2)
Oryctolagus cuniculus (2)

Organisms

Homo sapiens (61)
Mus musculus (11)
marine metagenome (4)
Bacteroides thetaiotaomicron (3)
Brassica napus (3)
Rattus norvegicus (2)
Oryza sativa Japonica Group (2)
Sphingobium sp. SYK-6 (1)
Simian-Human immunodeficiency virus (1)
Urocitellus parryii (1)
Lens culinaris subsp. culinaris (1)
Canis lupus (1)
Macaca mulatta (1)
Oryza sativa (1)
freshwater metagenome (1)
Solanum lycopersicum (1)
Escherichia coli (1)
Arabidopsis thaliana (1)

Repository

biostudies-arrayexpress (746)
pride (136)
ENA (120)
MetaboLights (29)
geo (22)
MetabolomicsWorkbench (18)
MassIVE (8)
EGA (6)
dbGaP (4)
iProX (2)
jPOST (1)
PAXDB (1)

Tissue

Cell culture (26)
Epithelial cell (11)
Leaf (10)
Permanent cell line cell (7)
Whole body (6)
Cultured cells (5)
Macrophages (5)
Brain (5)
Blood plasma (4)
Macrophage (4)
Mycelium (4)
Plant cell (4)
Blood serum (3)
Cell suspension culture (3)
Fibroblast (3)
Lung (3)
T cell (3)
Cells (2)
Lung (2)
Blood cell (2)
Breast (2)
Early embryonic cell (2)
Embryo (2)
Eukaryotic cell (2)
Monocyte (2)
Neuron (2)
Blood (1)
Epithelial cells (1)
Fibroblast cells (1)
Mesenteric lymph (1)

Disease

Breast cancer (8)
Amyotrophic lateral sclerosis (5)
Disease free (5)
Cancer (3)
Malaria (3)
Sleeping sickness (3)
Normal (2)
Colorectal Neoplasms (2)
Acute leukemia (2)
Cervix carcinoma (2)
Dentin caries (2)
Lung adenocarcinoma (2)
Severe acute respiratory syndrome (2)
HPV positive (1)
Cocaine addiction (1)
None (1)
Schizophrenia (1)
Diabetes (1)
Endotoxemia (1)
Parasitic infection (1)
Acute myeloid leukemia (1)
Brain glioma (1)
COVID-19 (1)
Cardiovascular system disease (1)
Eye disease (1)
FTDALS1 (1)
Frontotemporal dementia (1)
Huntington Disease (1)
Hypertension (1)
Ischemic stroke (1)

Technology Type

Mass Spectrometry (154)
Shotgun proteomics (74)
Bottom-up proteomics (28)
Mass spectrometry (24)
Affinity purification coupled with mass spectrometry proteomics (24)
ESI (18)
Data-dependent acquisition (16)
Data-independent acquisition (6)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
Gel-based experiment (4)
Mass spectrometry assay (3)
NMR spectroscopy (3)
SWATH MS (3)
All-ion fragmentation (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Affinity proteomics (1)
SRM/MRM (1)
SomaScan affinity proteomics (1)
Top-down proteomics (1)

Instrument Platform

Axon GenePix 4000A scanning hardware (15)
Liquid Chromatography MS - positive - reverse phase (12)
Liquid Chromatography MS - negative - reverse phase (10)
Illumina NovaSeq 6000 (8)
Liquid Chromatography MS - negative - hilic (6)
Liquid Chromatography MS - positive - hilic (5)
Orbitrap Fusion Lumos (4)
Illumina HiSeq 2000 (3)
Liquid Chromatography MS - positive (3)
Nuclear Magnetic Resonance (NMR) - (3)
Qubit (2)
NA (2)
Illumina HiSeq 4000 (2)
NextSeq 500 (2)
LTQ Orbitrap (2)
MS:1000031 (2)
Gas Chromatography MS - positive (2)
ATAC-seq kit (Catalog No. 53150, Active Motif) (1)
-- (1)
Covaris (1)
Covaris S220 (LGC Genomics GmbH), Bioanalyseur 2100 (Agilent), Bravo Platform (Agilent) (1)
Agilent Technologies Scanner G2505C (1)
ScanArray 4000 [PerkinElmer] (1)
Scanning hardware (1)
Illumina NovaSeq X (1)
Illumina HiSeq 1500 (1)
NextSeq 550 (1)
Illumina HiSeq 3000 (1)
LTQ (1)
Q Exactive HF-X (1)

Publication Date

2015 (134)
2013 (120)
2010 (102)
2014 (85)
2012 (78)
2011 (77)
2022 (43)
2016 (37)
2008 (36)
2025 (33)
2023 (28)
2009 (28)
2021 (26)
2026 (21)
2007 (20)
2024 (18)
2020 (14)
2006 (13)
2019 (11)
2018 (7)
2017 (6)
2005 (6)
2004 (2)

UNIPROT ID/AC

14331_ORYSJ (1)
14332_ORYSJ (1)
14333_ORYSJ (1)
14334_ORYSJ (1)
14335_ORYSJ (1)
14336_ORYSJ (1)
2ABA_ORYSJ (1)
40C1_ORYSJ (1)
40G2_ORYSJ (1)
40G3_ORYSJ (1)
4CL3_ORYSJ (1)
4CL4_ORYSJ (1)
4CLL1_ORYSJ (1)
4CLL4_ORYSJ (1)
4CLL5_ORYSJ (1)
6PGD1_ORYSJ (1)
6PGD2_ORYSJ (1)
6PGL2_ORYSJ (1)
6PGL3_ORYSJ (1)
6PGL4_ORYSJ (1)
A0A024FLK4_ORYSJ (1)
A0A0N7KC78_ORYSJ (1)
A0A0N7KD71_ORYSJ (1)
A0A0N7KDZ0_ORYSJ (1)
A0A0N7KE18_ORYSJ (1)
A0A0N7KE80_ORYSJ (1)
A0A0N7KEH6_ORYSJ (1)
A0A0N7KET0_ORYSJ (1)
A0A0N7KEW3_ORYSJ (1)
A0A0N7KF42_ORYSJ (1)

CHEBI ID

CHEBI:15354 (6)
CHEBI:18237 (6)
CHEBI:28044 (6)
CHEBI:28300 (6)
CHEBI:15428 (5)
CHEBI:15741 (5)
CHEBI:16235 (5)
CHEBI:16359 (5)
CHEBI:16811 (5)
CHEBI:17822 (5)
CHEBI:25017 (5)
CHEBI:25094 (5)
CHEBI:26986 (5)
CHEBI:30769 (5)
CHEBI:30915 (5)
CHEBI:6650 (5)
CHEBI:16196 (4)
CHEBI:16704 (4)
CHEBI:16708 (4)
CHEBI:17126 (4)
CHEBI:18012 (4)
CHEBI:18186 (4)
CHEBI:18257 (4)
CHEBI:22653 (4)
CHEBI:22660 (4)
CHEBI:24898 (4)
CHEBI:26271 (4)
CHEBI:29016 (4)
CHEBI:32816 (4)
CHEBI:73858 (4)

Metabolite Name

Cholic acid (3)
Choline (3)
Tris(2-butoxyethyl) phosphate (3)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
1,11-Undecanedicarboxylic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
2,3-Octanedione (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
3-Phenyl-1-propanol (2)
6-phosphogluconate (2)
9(10)-EpOME (2)
ADP (2)
AMP (2)
Adenine (2)
C17 Sphinganine (2)
Caffeine (2)
Choline (2)
Citrate (2)
Creatine (2)
Elaidic acid (2)
Ergothioneine (2)
Genistein (2)
Glutamine (2)
Glycine (2)
Guanine (2)
Hypoxanthine (2)
Jasmolone (2)
L-Glutamine (2)
Lyso-PC(16:0) (2)

First Public Date

2014 (34)
2023 (8)
2022 (8)
2021 (8)
2018 (8)
2017 (8)
2026 (7)
2025 (7)
2024 (7)
2016 (7)
2015 (7)
2019 (5)
2020 (4)
2013 (2)

Classification

bacteria (4)
viruses (1)

Modification

Not available (1)

Study status

Completed (1)
Recruiting (1)

Study type

Transcription profiling by array (536)
RNA-seq of coding RNA (88)
ChIP-seq (25)
RNA-seq of non coding RNA (24)
Unknown experiment type (19)
Other (9)
ChIP-chip by tiling array (7)
Transcription profiling by tiling array (7)
Transcription profiling by SAGE (5)
Comparative genomic hybridization by array (4)
Methylation profiling by array (4)
DNA-seq (3)
Cell line - High-throughput sequencing (2)
Genotyping by array (2)
Transcription profiling by RT-PCR (2)
ATAC-seq (2)
MicroRNA profiling by array (2)
ChIP-chip by array (1)
MBD-seq (1)
Proteomic profiling by array (1)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)
Interventional (1)
Observational (1)

Release Date

2022 (211)
2023 (200)
2021 (193)
2015 (193)
2025 (186)
2013 (163)
2014 (144)
2024 (135)
2020 (130)
2010 (127)
2016 (116)
2011 (111)
2012 (107)
2019 (101)
2018 (74)
2017 (74)
2008 (53)
2009 (49)
2026 (28)
2007 (27)
2006 (18)
2005 (6)
2004 (6)
2002 (4)
2001 (3)
2000 (1)

Lab affiliation

Huazhong Agricultural University (3)
National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, China (3)
Signalling ISP, Babraham Institute, Cambridge, UK (3)
Centre for Ocular Regeneration (CORE), Prof. Brien Holden Eye Research Centre (BHERC), L V Prasad Eye Institute, Hyderabad, Telangana, India (2)
College of Agronomy, Jiangxi Agricultural University (2)
PROBE (2)
State Key Laboratory of Oral Diseases, National Clinical Research Center for Oral Diseases, West China Hospital of Stomatology, Sichuan University, Chengdu, China (lab head) (2)
Washington University in St. Louis (2)
Aalborg University (1)
Academia Sinica (1)
Anhui Province Key Laboratory of Crop Integrated Pest Management, School of Plant Protection, Anhui Agricultural University, Hefei 230036, China. (1)
Anhui University of Traditional Chinese Medicine (1)
Babraham Institute (1)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (1)
Beijing Academy of Agriculture and Forestry Sciences (1)
Beijing Key Laboratory for Dairy Cow Nutrition, Beijing University of Agriculture (1)
Beijing Tongren Hospital, Capital Medical University (1)
Bioanalytical Mass Spectrometry, Max Planck Institute for Multidisciplinary Sciences, Goettingen, Germany (1)
Biology (1)
CRCHUM-Centre Hospitalier de l'Université de Montréal, Montréal, QC H2X 0A9, Canada. (1)
Cancer Research UK Cambridge Institute, University of Cambridge, Robinson Way, Cambridge, CB2 0RE, UK (1)
Cell Biology and Physiology, University of North Carolina at Chapel Hill, North Carolina, USA (1)
Cell Pathology Division 816F/ARC Children’s Hospital of Philadelphia The University of Pennsylvania 3615 Civic Center Blvd. 816F/ARC Philadelphia, PA 19104 (1)
Cell Signalling and Immunology Division, School of Life Sciences, University of Dundee (1)
Centre for Genomics and Computational Biology Barts Cancer Institute Queen Mary, University of London John Vane Science Centre, Charterhouse Square, London EC1M 6BQ Tel: +44 (0)20 7882 8266 | Fax: +44 (0)20 7882 3891 | Email: p.cutillas@qmul.ac.uk (1)
Centro de Investigación Príncipe Felipe, Av. Eduardo Primo Yúfera 3, 46012 Valencia, Spain (1)
China Agricultural University (1)
College of Agriculture, Nanjing Agricultural University, Nanjing, China (1)
College of Life Science and Technology, Beijing University of Chemical Technology, Beijing 100029, China. (1)
College of Plant Protection, Anhui Agricultural University (1)