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MetabolomicsAspSnFR: A Genetically-Encoded Biosensor for Real-Time Monitoring of Aspartate in Live Cells

Aspartate is crucial for nucleotide synthesis, ammonia detoxification and maintaining redox balance via the malate-aspartate-shuttle (MAS). To disentangle these multiple roles of aspartate metabolism, tools are required that measure aspartate concentrations in real time and in live cells. We intr...

2024-08-27 | MTBLS10035 | MetaboLights
MetabolomicsComparative metabolomic responses to gibberellic acid and 6-benzylaminopurine in Cunila menthoides Benth. (Lamiaceae): a contribution to understand the metabolic pathways
Little is known about the effects of 6-benzylaminopurine (BA) and gibberellic acid (GA3) on the synthesis of secondary metabolites in species of Lamiaceae. In this study, for the first time, the profile of secondary metabolites in plantlets of Cunila menthoides was characterized, using UPLC-ESI-Qq-o...
2018-05-24 | MTBLS581 | MetaboLights
TranscriptomicsRegulation of extraembryonic endoderm stem cell differentiation by Nodal and EGF-CFC signaling
The signaling pathway for Nodal, a ligand of the transforming growth factor-beta (TGF-beta) superfamily, plays a central role in regulating the maintenance and/or differentiation of stem cell types that can be derived from the peri-implantation mouse embryo. Extraembryonic endoderm stem (XEN) cells ...
ORGANISM(S): Mus musculus 
2011-11-29 | E-GEOD-23675 | biostudies-arrayexpress
TranscriptomicsRNA-seq of pancreatic CAF-derived cell line 0082T treated with Autotaxin inhibitors (IOA-289 and PF-8380) against DMSO treated controls
Autotaxin (ATX), encoded by ENPP2, catalyzes the production of lysophosphatidic acid (LPA), an important regulator within the tumor microenvironment (TME). ATX is a clinical target in pancreatic ductal adenocarcinoma (PDAC), yet the pro-tumorigenic action of the ATX/LPA axis in PDAC remains unclear....
ORGANISM(S): Homo sapiens 
2024-10-06 | E-MTAB-14494 | biostudies-arrayexpress
MetabolomicsMetabolic profiling of Candida clinical isolates of different species and infection sources

Candida species are the most common cause of opportunistic fungal infections. Rapid identification and novel approaches for the characterization of these fungi are of great interest to improve the diagnosis and the knowledge about their pathogenic properties. This study aimed to characte...

2024-07-09 | MTBLS1978 | MetaboLights
TranscriptomicsRNA-seq of grey mullet Mugil cephalus liver in response to three increasing replacement levels (10%, 15% and 20%) of conventional fishmeal with black soldier fly Hermetia illucens meal
This experiments aimed at elucidating the hepatic transcriptional responses of the flathead grey mullet Mugil cephalus fed with a diet where conventional fishmeal was increasingly replaced with partially defatted black soldier fly (Hermetia illucens, BSF). This fish species is receiving increasing gl...
ORGANISM(S): Mugil cephalus 
2026-07-27 | E-MTAB-16923 | biostudies-arrayexpress
TranscriptomicsThe protein disulfide isomerase AGR2 is essential for the production of intestinal mucus
Protein disulfide isomerases (PDIs) aid protein folding and assembly by catalyzing formation and shuffling of cysteine disulfide bonds in the endoplasmic reticulum (ER). Many members of the PDI family are expressed in mammals but the roles of specific PDIs in vivo are poorly understood. A recent hom...
ORGANISM(S): Mus musculus 
2010-05-19 | E-GEOD-12503 | biostudies-arrayexpress
MetabolomicsThe plasticity of the grapevine berry transcriptome
Vitis vinifera cultivar Corvina clone 48 berries were harvested from different vineyards, each located in one of the three most important wine production macro-areas of the Verona region: Bardolino, Valpolicella and Soave, on the basis of the site geographical coordinates. For each of the selected v...
2013-11-04 | MTBLS39 | MetaboLights
Proteomics,MultiomicsPervasive, coordinated protein level changes driven by transcript isoform switching during meiosis in yeast
To better understand the gene regulatory mechanisms that program developmental processes, we carried out simultaneous, genome-wide measurements of mRNA, translation and protein through meiotic differentiation in budding yeast.
ORGANISM(S): Saccharomyces Cerevisiae (ncbitaxon:4932) 
2018-01-02 | MSV000081874 | MassIVE
Proteomics,MultiomicsExpression of kava SPS1, SPS2, CHS, KOMT1, and KOMT2 in Nicotiana benthamiana
Expression of kava SPS1, SPS2, CHS, KOMT1, and KOMT2 in Nicotiana benthamiana
ORGANISM(S): Nicotiana Benthamiana (ncbitaxon:4100) 
2018-12-22 | MSV000083276 | MassIVE
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