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TranscriptomicsMarking of the genome by H3K4 methylation prior to embryonic gene activation
Early zebrafish embryo development proceeds first from a maternally transcribed and stored mRNAs, and zygotic gene activation (ZGA) is initiated at the mid-blastula transition (MBT; 1000-cell stage), 3.3 h post-fertilization. Very little is known on how the zygotic genome is programmed for transcr...
ORGANISM(S): Danio rerio 
2011-12-02 | E-GEOD-27314 | biostudies-arrayexpress
TranscriptomicsThree-dimensional modeling of the P. falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression
The development of the human malaria parasite Plasmodium falciparum is controlled by coordinated changes in gene expression throughout its complex life cycle, but the corresponding regulatory mechanisms are incompletely understood. To study the relation between genome architecture and gene regulatio...
ORGANISM(S): Plasmodium falciparum 3D7 
2014-01-06 | E-GEOD-50199 | biostudies-arrayexpress
UnknownPrior appendectomy does not protect against subsequent development of malignant or borderline mucinous ovarian neoplasms.
Not available
S-EPMC3929430 | biostudies-literature
TranscriptomicsComparative genomic hybridization of 17 strains of Ralstonia solanacearum, one strain of R. syzygii and one strain of R. pickettii
comparison of gene content between 17 strains of Ralstonia solanacearum, one strain of R. syzygii and one strain of R. pickettii
ORGANISM(S): Ralstonia solanacearum 
2006-11-25 | E-MEXP-851 | biostudies-arrayexpress
TranscriptomicsRNA at 92 M-BM-0C: the non-coding transcriptome of the hyperthermophilic archaeon Pyrococcus abyssi.
The non-coding transcriptome of the hyperthermophilic archaeon Pyrococcus abyssi is investigated using the RNA-seq technology. A dedicated computational pipeline analyzes RNA-seq reads and prior genome annotation to identify small RNAs, untranslated regions of mRNAs, and cis-encoded antisense transc...
ORGANISM(S): Pyrococcus abyssi 
2014-05-31 | E-GEOD-58131 | biostudies-arrayexpress
TranscriptomicsBrassica nigra challenged by ozone, Pieris brassicae and both ozone followed by P. brassicae feeding.
Brassica nigra plants, a Brassicaceae close to Arabidopsis thaliana, was used for combined stresses experiments. In this study, we performed a whole-genome microarray analysis on five-week-old plants and compared untreated plants and plants treated with ozone at 70 ppb, larvae of Pieris brassicae or...
ORGANISM(S): Brassica nigra 
2017-02-10 | E-MTAB-5030 | biostudies-arrayexpress
TranscriptomicsComparative genomic hybridization by array of human de novo actue myeloid leukemia (p-AML) samples and normal samples
Therapy-related acute myeloid leukemia (t-AML) is a severe complication of the cytotoxic therapy used for primary cancer treatment. The outcome of these patients is poor compared to people who develop de novo acute myeloid leukemia (p-AML). Chromosome abnormalities in t-AML are partly dependent on t...
ORGANISM(S): Homo sapiens 
2011-05-18 | E-TABM-1014 | biostudies-arrayexpress
TranscriptomicsTranscriptome analysis of poplar during leaf spot infection with Sphaerulina spp.
Diseases of poplar caused by the fungal pathogen Sphaerulina musiva and related species are of growing concern, particular with the increasing interest in intensive popluliculture to meet increasing energy demands. S. musiva is able to cause infection on leaves, resulting in defoliation and canker f...
ORGANISM(S): Populus balsamifera 
2015-08-28 | E-GEOD-67697 | biostudies-arrayexpress
MetabolomicsAn Unbiased Lipid Phenotyping Approach To Study the Genetic Determinants of Lipids and Their Association with Coronary Heart Disease Risk Factors
Direct infusion high-resolution mass spectrometry (DIHRMS) is a novel, high-throughput approach to rapidly and accurately profile hundreds of lipids in human serum without prior chromatography, facilitating in-depth lipid phenotyping for large epidemiological studies to reveal the detailed associati...
2024-02-02 | MTBLS4461 | MetaboLights
TranscriptomicsHybrid_Poplar_H11-11_Leaves_Local_Stress_Response_DataSet2
We investigated the transcriptional response of hybrid poplar (Populus trichocarpa x deltoides) leaves to methyl jasmonate treatment over a 24 hour time course. Experiments were conducted using clonal trees under greenhouse conditions at the University of British Columbia. We used the 15.5K poplar...
ORGANISM(S): Populus trichocarpa x Populus deltoides 
2008-12-30 | E-GEOD-14039 | biostudies-arrayexpress
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