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ProteomicsMULocDeep: An Interpretable Deep Learning Model for Protein Localization Prediction with Sub-organelle Resolution
Prediction of protein localization plays an important role in understanding protein function and mechanism. A deep learning-based localization prediction tool (“MULocDeep”) assessing each amino acid’s contribution to the localization process provides insights into the mechanism of protein sorting an...
ORGANISM(S): Solanum tuberosum (Potato) Arabidopsis thaliana (Mouse-ear cress) Vicia faba var. faba 
2022-02-15 | PXD019987 | Pride
Protein localization prediction Shotgun proteomics Protein targeting Plant mitochondria isolation Deep learning 
UnknownDeepLoc 2.0: multi-label subcellular localization prediction using protein language models.
Not available
S-EPMC9252801 | biostudies-literature
ProteomicsThe tomato chloroplast stromal proteome compendium elucidated by leveraging a plastid protein-localization prediction Atlas
Tomato (Solanum lycopersicum) is a model species for studying fruit development, wounding, herbivory, and pathogen attack. Despite tomato’s world-wide economic importance and the role of chloroplasts as metabolic hubs and integrators of environmental cues, little is known about the stromal proteome ...
ORGANISM(S): Solanum lycopersicum 
2023-10-24 | PXD035944 | Pride
Lumenal proteins Protein homeostasis Proteomics Chloroplast Solanum lycopersicum Redox Leucine aminopeptidase Stroma 
ProteomicsDeepFLR Facilitates False Localization Rate Control in Phosphoproteomics
Site-specific phosphorylation events affect nearly all the cellular processes and correct phosphosite localization plays an important role in biological or medical health studies. However, direct false localization rate (FLR) control remains challenging in phosphoproteomics. Here, we propose DeepFLR...
ORGANISM(S): Homo Sapiens 
2023-04-04 | PXD037580 |
UnknownPrediction of protein subcellular localization in single cells.
Not available
S-EPMC12767758 | biostudies-literature
UnknownPrediction of protein subcellular localization in single cells.
Not available
S-EPMC11291118 | biostudies-literature
UnknownGoing from where to why--interpretable prediction of protein subcellular localization.
Not available
S-EPMC2859129 | biostudies-literature
UnknownPrediction of protein subplastid localization and origin with PlastoGram.
Not available
S-EPMC10209082 | biostudies-literature
UnknownTESTLoc: protein subcellular localization prediction from EST data.
Not available
S-EPMC3000424 | biostudies-literature
UnknownpSLIP: SVM based protein subcellular localization prediction using multiple physicochemical properties.
Not available
S-EPMC1182350 | biostudies-literature
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