Protein-protein interaction (ppi)

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Unknown (6886)
Proteomics (391)
Genomics (215)
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Metabolomics (5)
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Models (2)

Organisms

Homo sapiens (103)
Mus musculus (36)
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Ovis aries (5)
Drosophila melanogaster (4)
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Oncorhynchus mykiss (3)
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Candida albicans (2)
Sus scrofa (2)
Oryctolagus cuniculus (2)
Ailuropoda melanoleuca (2)
Mus (2)
Anser cygnoides (2)
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rat gut metagenome (1)
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Cryptococcus neoformans (1)
Equus asinus x Equus caballus (1)

Organisms

Homo sapiens (79)
Mus musculus (31)
Rattus norvegicus (7)
Saccharomyces cerevisiae (7)
Ovis aries (4)
Gallus gallus (3)
Danio rerio (3)
Oncorhynchus mykiss (2)
Oryctolagus cuniculus (2)
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Burkholderia thailandensis (1)
Cryptococcus neoformans (1)
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Mesocricetus auratus (1)
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Mus (1)
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Vitis vinifera (1)
Sus scrofa (1)
Bos taurus (1)

Repository

pride (294)
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Tissue

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Disease

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Herpes zoster (1)
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Diarrhea (1)
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Insomnia (1)
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Nephrotic syndrome (1)
Colonic disease (1)
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Cerebrovascular disease (1)
Pancreatitis (1)
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Diabetic retinopathy (1)
Age related macular degeneration (1)
Lung small cell carcinoma (1)
Bone cancer (1)

Technology Type

Mass Spectrometry (294)
Shotgun proteomics (127)
Bottom-up proteomics (68)
Affinity purification coupled with mass spectrometry proteomics (47)
Data-dependent acquisition (39)
Data-independent acquisition (22)
Top-down proteomics (13)
Chemical cross-linking coupled with mass spectrometry proteomics (13)
SWATH MS (9)
Gel-based experiment (7)
SRM/MRM (6)
All-ion fragmentation (4)
Mass spectrometry assay (3)
Mass spectrometry (2)
Proteogenomics (1)
DiaPASEF (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse-phase (4)
Q Exactive (3)
Liquid Chromatography MS - negative - reverse-phase (3)
NextSeq 2000 (2)
Illumina HiSeq 4000 (2)
TimsTOF Pro 2 (2)
Orbitrap Exploris 480 (2)
Q Exactive Plus (2)
Illumina NovaSeq X (1)
NextSeq 500 (1)
Q Exactive Orbitrap HF (1)
Dionex UltiMate 3000 HPLC (Thermo Scientific instrument model) (1)
EASY-Spray C18 column (1)
LTQ Orbitrap Velos Pro (1)
LTQ Orbitrap Elite (1)
Q Exactive HF-X (1)
Orbitrap Fusion (1)
Q Exactive HF (1)
LTQ Orbitrap (1)
Orbitrap Fusion Lumos (1)
Orbitrap Exploris 240 (1)
Liquid Chromatography MS - alternating - reverse phase (1)

Publication Date

2026 (88)
2025 (86)
2022 (77)
2024 (59)
2023 (59)
2021 (54)
2020 (32)
2019 (19)
2017 (15)
2015 (7)
2014 (7)
2018 (6)
2013 (4)
2016 (2)
2012 (2)
2008 (2)
2027 (1)

UNIPROT ID/AC

89462.XP_006058886.1 (1)
89462.XP_006041555.1 (1)
89462.XP_006048072.1 (1)
89462.XP_006055481.1 (1)
89462.XP_006054355.1 (1)
89462.XP_006047823.1 (1)
89462.XP_006059550.1 (1)
89462.XP_006043425.1 (1)
89462.XP_006050188.1 (1)
89462.XP_006050736.1 (1)
89462.XP_006049924.1 (1)
89462.XP_006052387.1 (1)
89462.XP_006042121.1 (1)
89462.XP_006050967.1 (1)
89462.XP_006067703.1 (1)
89462.XP_006051359.1 (1)
89462.XP_006061533.1 (1)
89462.XP_006072694.1 (1)
89462.XP_006073260.1 (1)
89462.XP_006079706.1 (1)
89462.XP_006071292.1 (1)
89462.XP_006054938.1 (1)
89462.XP_006053282.1 (1)
89462.XP_006071106.1 (1)
89462.XP_006080923.1 (1)
89462.XP_006057351.1 (1)
89462.XP_006068459.1 (1)
89462.XP_006047680.1 (1)
89462.XP_006062596.1 (1)
89462.XP_006055187.1 (1)

CHEBI ID

CHEBI:229202 (1)
CHEBI:229201 (1)
CHEBI:83535 (1)
CHEBI:193929 (1)
CHEBI:229200 (1)
CHEBI:31554 (1)
CHEBI:229199 (1)
CHEBI:183357 (1)
CHEBI:229198 (1)
CHEBI:229197 (1)
CHEBI:229196 (1)
CHEBI:229195 (1)
CHEBI:229194 (1)
CHEBI:229193 (1)
CHEBI:229192 (1)
CHEBI:229191 (1)
CHEBI:229190 (1)
CHEBI:229189 (1)
CHEBI:229188 (1)
CHEBI:229187 (1)
CHEBI:229186 (1)
CHEBI:229185 (1)
CHEBI:229184 (1)
CHEBI:197479 (1)
CHEBI:229183 (1)
CHEBI:229182 (1)
CHEBI:229181 (1)
CHEBI:229180 (1)
CHEBI:229179 (1)
CHEBI:229178 (1)

Metabolite Name

Coenzyme Q9 (coenzyme Q9) (1)
Reduced coenzyme Q9 (coenzyme Q9H2) (1)
Coenzyme Q10 (coenzyme Q10) (1)
Reduced coenzyme Q10 (coenzyme Q10H2) (1)
Trigonelline HCl (1)
Tubeimoside II (1)
1,2,3,19-Tetrahydroxyurs-12-en-28-oic acid (1)
Neosperidin dihydrochalcone (1)
Catharanthine hemitartrate (1)
Ergonovine maleate (1)
Demethyleneberberine (1)
N-L-Acetyl-arginine (1)
D-Hydroxyglutaric acid (1)
Prostaglandin F1 (1)
Zearalanol (1)
6-O-(2-Methylbutanoyl)-alpha-glucopyranosyl D-glucopyranoside (1)
Propanoic acid, 2-methyl-, 2-ethyl-3-hydroxyhexyl ester (1)
2,3,4,9-Tetrahydro-1H-carboline-3-carboxylic acid (1)
Sphingosine(d18:1) (1)
Z-4,9-Diene-2,3,7-trithiadeca-7-oxide (1)
Trans-3-Ethylidene-2-pyrrolidone (1)
Sym-Homospermidine (1)
S-Methyl mercapto-L-cysteine (1)
Protoanemonin hydrate glucoside (1)
Precocene (1)
Potanidine B (1)
Picrocrocinic acid (1)
Phenyl isothiocyanate (1)
Pentahydroxybufostane (1)
Pachysamine B (1)

First Public Date

2025 (40)
2026 (33)
2024 (32)
2022 (30)
2021 (23)
2023 (20)
2020 (10)
2014 (5)
2019 (3)
2017 (2)
2015 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

UCSF (5)
1 Department of Cardiac Surgery, Fujian Medical University Union Hospital, Fuzhou, China 2 Department of Toxicology, Fujian Center for Evaluation of New Drug, Fujian Medical University, Fuzhou, China (4)
University of Texas Medical Branch (3)
Department of Structural Biology, Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP) (2)
Department of Systems Pharmacology and Translational Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA (2)
Qingdao Agricultural University (2)
Traditional Chinese Medicine Hospital Affiliated to Xinjiang Medical University (2)
Key Laboratory of Rare and Uncommon Diseases, Department of Microbiology, Institute of Basic Medicine, Shandong First Medical University & Shandong Academy of Medical Sciences (2)
Univ. Lille, Inserm, CHU Lille, U1192 - Protéomique Réponse Inflammatoire Spectrométrie de Masse - PRISM, F-59000 Lille, France (2)
Institute for Clinical Biochemistry and Pathobiochemistry German Diabetes Center (DDZ) Leibniz Center for Diabetes Research at Heinrich Heine University Düsseldorf Auf´m Hennekamp 65 40225 Düsseldorf Germany (2)
College of Veterinary Medicine, Northwest A&F University (2)
Department of Molecular Biology, Princeton University, USA (2)
Lanzhou Veterinary Research Institute (2)
State Key Laboratory of Veterinary Etiological Biology, Key Laboratory of Veterinary Parasitology of Gansu Province, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, Gansu Province 730046, PR China (2)
College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University (2)
Basilbiotech, Incheon 22002, Republic of Korea. (2)
Department of Nephrology, Children's Hospital of Fudan University, National Pediatric Medical Center of China, Shanghai, China. (1)
Translational Medical Center for Stem Cell Therapy and Institute for Regenerative Medicine, Medical Innovation Center and State Key Laboratory of Cardiology, Shanghai East Hospital, Clinical and Translational Research Center of Shanghai First Maternity & Infant Hospital, Frontier Science Center for Stem Cell Research, School of Life Sciences and Technology, Sports and Health Research Center, Tongji University Department of Physical Education, Tongji University, Shanghai 200092, China (1)
State Key Laboratory of Quality Research in Chinese Medicine and Institute of Chinese Medical Sciences, University of Macau, Macau 999078 (1)
Radiation Signaling Group, Radiation Biology & Health Sciences Division, Bio-Science Group, Bhabha Atomic Research Centre (BARC), Mumbai - 400 085, India and Homi Bhabha National Institute (HBNI), Mumbai - 400 094, India (1)
Nanjing First Hospital (1)
College of Veterinary Medicine, Xinjiang Agricultural University (1)
College of plant protection, Southwest University, China (1)
Eye Center of the 2nd Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang Province, China (1)
Cancer Biomarkers Research Group Health Research Institute-Fundacion Jimenez Diaz (IIS-FJD, UAM) Madrid, Spain (1)
Department of Burns and Reconstructive Surgery, Xiangya Hospital, Central South University, Changsha, Hunan, P.R. China. (1)
Princeton University, Molecular Biology Department, USA (1)
Laboratory of Gene Expression and Cancer, GIGA-Molecular & Computational Biology, University of Liège, 4000 Liège, Belgium (1)
University of Oslo Faculty of Medicine Department of Microbiology (1)
Henan Institute of Medical and Pharmaceutical Sciences, Zhengzhou University, Henan 450052, China (1)

IsPrivate

False (1)

Classification

fungi (1)
viruses (1)
bacteria (1)

Modification

6x(2)H labeled dimethylated L-arginine (1)

Study type

Transcription profiling by array (16)
Unknown experiment type (1)
Animal - High-throughput sequencing (1)
RIP-seq (1)
Other (1)
CUT&RUN (1)
RNA-seq of total RNA (1)
RNA-seq of coding RNA (1)

Release Date

2022 (1291)
2021 (982)
2025 (913)
2023 (880)
2024 (721)
2020 (643)
2019 (411)
2018 (276)
2017 (190)
2016 (112)
2015 (97)
2014 (91)
2026 (78)
2013 (62)
2012 (49)
2011 (38)
2010 (29)
2009 (19)
2007 (12)
2008 (11)
2001 (2)
2006 (1)
2005 (1)

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PROPER-seq (PROtein Protein intERaction sequencing)

PRJNA633786 | ENA

Treatment of LNCaP cells with novel PRMT5:MEP50 protein:protein interaction inhibitors

PRJNA851032 | ENA

Host and pathogen interaction: time course [zebrafish]

The interaction between fungal pathogen and host during infection is a complex and dynamic process. To resolve this, we chose the zebrafish model organism as the host to study C. albicans infection via systems biology approach. Transcriptome microarray data and histological analysis of surviving fis...

ORGANISM(S): Danio rerio

2013-08-26 | E-GEOD-32118 | biostudies-arrayexpress

Host and pathogen interaction: time course [C. albicans]

ORGANISM(S): Candida albicans

2013-08-26 | E-GEOD-32117 | biostudies-arrayexpress

Autism mutations rewire protein interaction networks to drive neurodevelopmental pathology

PRJNA1202137 | ENA

SoPPIs: a highly parallelized protein-protein-interaction screening method in prokaryotic and eukaryotic hosts

PRJEB76943 | ENA

PPI-ID: Streamlining protein-protein interaction prediction through domain and SLiM mapping.

Not available

S-EPMC12571275 | biostudies-literature

The protein-protein interaction ontology: for better representing and capturing the biological context of protein interaction.

Not available

S-EPMC8596923 | biostudies-literature

Protein-Protein Interaction (PPI) Network of Zebrafish Oestrogen Receptors: A Bioinformatics Workflow.

Not available

S-EPMC9143887 | biostudies-literature

SGP2024 - Apoptosis_AgNPs

This model explores the temporal dynamics of silver nanoparticles (AgNPs)-induced apoptosis using dynamic simulations in COPASI. It provides a time-resolved framework for understanding how cellular stress progresses to programmed cell death.

2025-09-08 | MODEL2412210001 | BioModels

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7634 Results

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