Proteoglycan 4 - OmicsDI

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Transcriptomics (638)
Unknown (500)
Genomics (114)
Proteomics (81)
Metabolomics (7)
Other (5)

Organisms

Homo sapiens (310)
Mus musculus (292)
Rattus norvegicus (15)
Caenorhabditis elegans (9)
Drosophila melanogaster (8)
Arabidopsis thaliana (8)
Mycobacterium tuberculosis (6)
Saccharomyces cerevisiae (6)
Canis lupus familiaris (5)
Gallus gallus (5)
Sus scrofa (4)
Solanum tuberosum (3)
Sminthopsis crassicaudata (2)
Globodera pallida (2)
Equus caballus (2)
Saccharomyces cerevisiae S288C (2)
Plasmodium falciparum (2)
Thermococcus kodakarensis KOD1 (1)
Sinorhizobium fredii NGR234 (1)
Salmo trutta fario (1)
Waddlia chondrophila (1)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (1)
Meleagris gallopavo (1)
Hippoglossus hippoglossus (1)
Escherichia sp. TW14265 (1)
Beijerinckiaceae bacterium (1)
Ambystoma mexicanum (1)
Pseudomonas syringae pv. tomato str. DC3000 (1)
Callithrix jacchus (1)
Ciona intestinalis (1)

Organisms

Mus musculus (15)
Homo sapiens (9)
Bos taurus (1)
Gallus gallus (1)
unidentified (1)

Repository

biostudies-arrayexpress (691)
pride (47)
ENA (36)
geo (20)
MassIVE (19)
EGA (13)
MetaboLights (7)
jPOST (6)
GPMDB (5)
iProX (2)

Tissue

Heart (7)
Brain (4)
Blood plasma (3)
Cartilage (3)
Cell culture (3)
Fibroblast (3)
Liver (2)
Myotube (2)
Tendon (2)
Uterine endometrium (2)
Articular cartilage (1)
Astrocyte of the cerebral cortex (1)
Blood circulation (1)
Blood serum (1)
Calvarial osteoblast (1)
Cartilage tissue (1)
Cerebrospinal fluid (1)
Embryonic fibroblast (1)
Endometrium (1)
Endometrium epithelium (1)
Epithelial cell (1)
Extracellular matrix constituent secretion (1)
Extracellular vesicle (1)
Fibroblast cell line (1)
Gingival fibroblast (1)
Glial cell (1)
Hepatocyte (1)
Islet of Langerhans (1)
Mandible (1)
Mesenchymal cell (1)

Disease

Not Available (5)
Acute myeloid leukemia (2)
Normal (2)
Cardiovascular system disease (2)
Liver cancer (2)
Myocardial ischemia (2)
Septic peritonitis (1)
Diabetes mellitus type 1 (1)
ER positive breast cancer (1)
Pancreatic ductal adenocarcinoma (1)
Benign Prostatic Hyperplasia (1)
Represent tolerant CD4+ T cells that have not been activated (1)
Colon carcinoma (1)
Atypical lung carcinoid (1)
Ovarian cancer (1)
Alzheimer's disease (1)
Endometrial cancer (1)
Fetal alcohol syndrome (1)
Gastric adenocarcinoma (1)
Glioblastoma (1)
Heart failure (1)
Lung cancer (1)
Neurological alteration (1)
Osteoarthritis (1)
Prostate adenocarcinoma (1)
Pulmonary hypertension (1)
Sjogren's Syndrome (1)
Type 1 diabetes mellitus (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (47)
Shotgun proteomics (28)
Bottom-up proteomics (14)
Data-dependent acquisition (11)
Mass spectrometry (4)
Mass spectrometry assay (3)
Gel-based experiment (3)
Affinity purification coupled with mass spectrometry proteomics (2)
Illumina MiSeq, ILLUMINA (1)
Illumina MiSeq (1)
Data-independent acquisition (1)
SWATH MS (1)

Instrument Platform

Illumina NovaSeq 6000 (59)
NextSeq 500 (29)
Illumina NovaSeq X (24)
Illumina HiSeq 2500 (23)
NextSeq 550 (17)
NextSeq 2000 (15)
Illumina HiSeq 2000 (10)
Illumina HiSeq 4000 (9)
DNBSEQ-G400 (7)
Element AVITI (6)
NA (4)
Illumina MiSeq (4)
None (3)
MinION (3)
Maxwell 16 LEV-plant RNA kit (2)
General usage Laborartory equipment (2)
Lab Centrifuge (2)
Chromium 10x (2)
Illumina Genome Analyzer IIx (2)
Illumina Genome Analyzer II (2)
NextSeq 1000 (2)
Illumina HiSeq X (2)
Illumina HiSeq 3000 (2)
Maxwell RSC instrument (1)
Maxwell RSC Instrument (1)
IPK PhenoSphere (1)
Agilent TapeStation (1)
Active Motif Catalog No. 53150 (1)
ATAC-seq kit (Catalog No. 53150, Active Motif) (1)
N/C (1)

Publication Date

2026 (96)
2025 (81)
2014 (66)
2013 (66)
2010 (66)
2015 (51)
2012 (50)
2011 (50)
2016 (45)
2008 (37)
2009 (29)
2021 (23)
2023 (21)
2018 (18)
2024 (17)
2022 (17)
2019 (16)
2020 (13)
2007 (12)
2017 (7)
2005 (5)
2006 (2)
2004 (2)

CHEBI ID

CHEBI:139311 (1)
CHEBI:16284 (1)
CHEBI:28862 (1)
CHEBI:141586 (1)
CHEBI:8087 (1)
CHEBI:139312 (1)
CHEBI:15996 (1)
CHEBI:17552 (1)
CHEBI:15422 (1)

Metabolite Name

5,6-dihydroxyprostaglandin F1a (1)
20beta-dihydrocortisol (1)
PC-M5 (1)
3-O-Methylcoumestrol (1)
LysoPC(26:1(5Z)) (1)
Fonsecin B (1)
Isopentyl mercaptan (1)
4-(Methylthio)-1-butanol (1)
Tectorigenin 4'-sulfate (1)
PC(24:1(15Z)/22:4(7Z,10Z,13Z,16Z)) (1)
28-Norcyclomusalenone (1)
3-Methyl-2-butenal (1)
1-(4-Methoxyphenyl)-2-nitroethylene (1)
Benzenepropanenitrile (1)
1-(5-Methyl-2-thienyl)-1-propanone (1)
Hydroxyprolyl-Histidine (1)
4,5-Dimethyloxazole (1)
2,4-Dimethyloxazole (1)
3,4-Hexahydroxydiphenoylarabinose (1)
Garcinia lactone dibutyl ester (1)
Acetic anhydride (1)
Shinflavanone (1)
Pyrimidine (1)
L-2-Amino-5-hydroxypentanoic acid (1)
(R)-Dihydromaleimide (1)
Prolyl-Alanine (1)
Nervonyl carnitine (1)
DATP (1)
Imidazoleacetic acid riboside (1)
SM(d16:1/24:1(15Z)) (1)

First Public Date

2014 (7)
2026 (4)
2025 (4)
2024 (4)
2023 (4)
2022 (3)
2020 (2)
2019 (2)
2018 (2)
2017 (2)
2021 (1)
2015 (1)

Study type

Transcription profiling by array (334)
RNA-seq of coding RNA (141)
ChIP-seq (43)
RNA-seq of coding RNA from single cells (22)
RNA-seq of total RNA (13)
ATAC-seq (12)
DNA-seq (12)
ChIP-chip by tiling array (10)
Methylation profiling by high throughput sequencing (9)
Unknown experiment type (8)
Comparative genomic hybridization by array (7)
Methylation profiling by array (7)
Proteomic profiling by array (6)
RNA-seq of non coding RNA (6)
Single nucleus RNA sequencing (5)
CUT&RUN (5)
Bisulfite-seq (4)
Hi-C (4)
Other (4)
Animal - High-throughput sequencing (3)
Cell line - High-throughput sequencing (3)
Transcription profiling by tiling array (3)
ChIP-chip by array (3)
RIP-seq (3)
CUT&Tag (2)
MNase-seq (2)
Transcription profiling by RT-PCR (2)
Exome sequencing (2)
MicroRNA profiling by array (2)
Cell line - Single-cell sequencing (1)

Release Date

2025 (104)
2026 (94)
2014 (86)
2013 (80)
2010 (78)
2015 (66)
2016 (64)
2012 (64)
2021 (61)
2011 (61)
2023 (54)
2022 (52)
2020 (50)
2009 (46)
2019 (44)
2008 (44)
2018 (39)
2017 (34)
2024 (31)
2007 (15)
2005 (10)
2006 (5)
2004 (3)
1999 (2)
2003 (1)
2002 (1)
1998 (1)
1997 (1)

Lab affiliation

King's College London (4)
Manchester Academic Health Science Centre, Division of Cell Matrix Biology & Regenerative Medicine, School of Biological Sciences, Faculty of Biology, Medicine and Health, Manchester, UK (3)
Proteomics group, Ri.MED Foundation, Palermo, Italy (2)
Aging and Cardiovascular Discovery Center, Lewis Katz School of Medicine, Temple University, Philadelphia, PA 19140, USA (1)
Biomedical engineering, Lerner research institue, Cleveland Clinic, Cleveland, OH, USA (1)
Boston University (1)
Boston University, Dept. of Biochemistry (1)
Centre de Recherche en Cancérologie de Marseille Inserm UMR1068, CNRS UMR7258, Aix-Marseille Université UM105,Institut Paoli-Calmettes 13273 MARSEILLE FRANCE (1)
Centre for Craniofacial and Regenerative Biology, King's College London, Guy's Hospital, United Kingdom (1)
Cleveland Clinic Lerner Research Institute (1)
Department of Biochemical Sciences, School of Biosciences, Faculty of Health and Medical Sciences, Edward Jenner Building, University of Surrey (1)
Department of Biochemistry and Molecular Biology, Pennsylvania State University College of Medicine, Milton S. Hershey Medical Center, Hershey, PA 17033 (1)
Department of Biochemistry, University of Turku, Turku, Finland (1)
Department of Laboratory Medicine, Sahlgrenska academy, University of Gothenburg, Gothenburg, Sweden (1)
Department of Medicine, Penn State Cancer Institute, Penn State College of Medicine, Hershey, PA. (1)
Department of Pediatrics University of Maryland, School of Medicine (1)
Department of Pediatrics and Adolescent Medicine, Experimental Neonatology, Medical Faculty, University of Cologne, Cologne, Germany and Center for Biochemistry, Medical Faculty, University of Cologne, Cologne, Germany (1)
Discovery Proteomics Facility (1)
Discovery Proteomics Facility, Oxford (1)
Dr. Rolf M. Schwiete Osteoarthritis Research Unit, Department of Trauma Surgery and Orthopedics, University Hospital, Goethe University, Frankfurt, Germany (1)
Head Proteomics Core Facility Medical University of Vienna Clinical Department of Laboratory Medicine (1)
Head of System Biology Lab. at Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency (1)
IMBA, Institute of Molecular Biotechnology of the Austrian Academy of Sciences, Vienna, Austria; IMP, Institute for Molecular Pathology, Vienna, Austria (1)
IMP - Research Institute of Molecular Pathology, IMBA - Institute of Molecular Biotechnology (1)
IRCCS Burlo Garofolo Trieste 34100 (1)
Inst Cardiovasc & Metabolic Med (LICAMM), University of Leeds, Leeds, United Kingdom (1)
Institute of Parasitology Vetsuisse Faculty University of Zurich Winterthurerstrasse 266a 8057 Zürich Switzerland (1)
King's BHF Centre of Research Excellence King's College London (London, UK) Contact 1: Prof Manuel Mayr (manuel.mayr@kcl.ac.uk) Contact 2: Dr Javier Barallobre-Barreiro (javier.barallobre-barreiro@kcl.ac.uk) (1)
Manchester Academic Health Science Centre, Division of Cell Matrix Biology & Regenerative Medicine, School of Biological Sciences, Faculty of Biology, Medicine and Health, Manchester, UK; (1)
McCaig institute for Bone and Joint Health, Cumming School of Medicine, University of Calgary, AB, Canada (1)

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Proteoglycan 4 and regorafenib synergistically reduce HCC progression in an orthotopic model

PRJNA1277109 | ENA

Proteoglycan 4 downregulation in a sheep meniscectomy model of early osteoarthritis.

Not available

S-EPMC1526595 | biostudies-literature

Proteoglycan 4: a dynamic regulator of skeletogenesis and parathyroid hormone skeletal anabolism.

Not available

S-EPMC4118835 | biostudies-literature

Cell surface chondroitin sulphate proteoglycan 4 (CSPG4) binds to the basement membrane heparan sulphate proteoglycan, perlecan, and is involved in cell adhesion.

Not available

S-EPMC5905647 | biostudies-literature

Proteoglycan sequencing - Deep sequencing of complex proteoglycans: a novel strategy for high coverage and site-specific identification of glycosaminoglycan-linked peptides

Proteoglycans are distributed in all animal tissues and play critical, multifaceted, physiological roles. Expressed in a spatially- and temporally-regulated manner, these molecules regulate interactions among growth factors and cell surface receptors and play key roles in basement membranes and oth...

ORGANISM(S): Bos taurus (Bovine) Homo sapiens (Human)

2018-05-22 | PXD008855 | Pride