Proteomexchange

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Unknown (1171)
Proteomics (820)
Other (256)
Multiomics (87)
Genomics (23)
Transcriptomics (10)
Metabolomics (9)

Organisms

Allexis (340)
Arabidopsis thaliana (340)
Bos taurus (340)
Callinectes sapidus (340)
Drosophila melanogaster (340)
Entamoeba histolytica HM-1:IMSS-A (340)
Escherichia coli (340)
Homo sapiens (206)
Mus musculus (10)
Bos taurus (3)
Escherichia coli (3)
Fusarium sinicum (3)
Saccharomyces cerevisiae (2)
Caenorhabditis elegans (2)
Ixodes scapularis (1)
Cervus elaphus (1)
Mus (1)
Oryctolagus cuniculus (1)
Rattus norvegicus (1)
Rattus rattus (1)
Ricinus communis (1)
Streptomyces rubiginosohelvolus (1)
Vibrio alginolyticus (1)
Elaeis guineensis (1)
Haloferax volcanii DS2 (1)
Natrialba magadii ATCC 43099 (1)
Acanthoscurria juruenicola (1)
Danio rerio (1)
Gallus gallus (1)
Montipora capitata (1)

Organisms

Homo sapiens (6)
Mus musculus (2)
fossil metagenome (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Drosophila melanogaster (1)
Glycine max (1)

Repository

pride (340)
GPMDB (256)
PeptideAtlas (186)
MassIVE (173)
PAXDB (73)
iProX (26)
ENA (22)
PanoramaPublic (14)
MetaboLights (9)
jPOST (7)
geo (6)
biostudies-arrayexpress (5)
EGA (1)

Tissue

Others (76)
Cell culture (52)
Epithelial cell (26)
Plasma Non-glyco (25)
Brain (17)
Blood plasma (16)
Digestive System (12)
Liver (11)
Permanent cell line cell (10)
Plant cell (10)
Lung (9)
Male Reproductive System (8)
Blood (8)
Brain (7)
Blood serum (7)
Kidney (7)
T cell (7)
Heart (6)
Large Intestine (6)
Liver (6)
Blood cell (6)
Fibroblast (6)
Eye (5)
Female Reproductive System (5)
Kidney (5)
Lung (4)
Adrenal Gland (3)
Pancreas (2)
Urinary Bladder (2)
Prefrontal Cortex (1)

Disease

Not Available (256)
Disease free (14)
Prostate adenocarcinoma (8)
Colon cancer (7)
Colorectal Carcinoma (5)
Alzheimer's disease (4)
Amyotrophic lateral sclerosis (4)
Breast cancer (4)
Cardiovascular system disease (4)
Cervix carcinoma (4)
Malignant neoplasm of ovary (4)
Non-small cell lung carcinoma (4)
Brain cancer (3)
Brain glioblastoma multiforme (3)
Glaucoma (3)
Lung cancer (3)
Acute leukemia (2)
Duchenne muscular dystrophy (2)
Glioblastoma (2)
Infertility (2)
Wounds and Injuries (2)
Alzheimer's Disease (1)
Adult spinal muscular atrophy (1)
Age related macular degeneration (1)
Brain ischemia (1)
Chronic kidney disease (1)
Chronic obstructive pulmonary disease (1)
Down syndrome (1)
Krabbe disease (1)
Lyme disease (1)

Technology Type

Mass Spectrometry (340)
Shotgun proteomics (198)
Bottom-up proteomics (59)
Affinity purification coupled with mass spectrometry proteomics (37)
Data-dependent acquisition (32)
SWATH MS (18)
Gel-based experiment (10)
Top-down proteomics (10)
Data-independent acquisition (9)
Mass spectrometry (8)
SRM/MRM (6)
Chemical cross-linking coupled with mass spectrometry proteomics (5)
All-ion fragmentation (3)
DiaPASEF (3)
HDMSE (3)
MSE (3)
Metaproteomics (2)
NMR spectroscopy (1)
Mass spectrometry assay (1)
Mass spectrometry imaging (1)

Instrument Platform

Instrument (256)
LTQ Orbitrap Velos (101)
Q Exactive (83)
LTQ Orbitrap Elite (68)
TripleTOF 5600 (52)
LTQ Orbitrap (21)
Orbitrap Fusion (6)
MS:1000031 (5)
Q Exactive HF (5)
LTQ Orbitrap XL (5)
MaXis 4G (4)
Orbitrap Fusion Lumos (4)
LTQ (4)
Orbitrap Fusion ETD (3)
Synapt G2-S HDMS (3)
Synapt MS (3)
LTQ FT (3)
6520A Quadrupole Time-of-Flight LC/MS (2)
AmaZon ETD (2)
Impact (2)
TripleTOF 6600 (2)
Illumina HiSeq 2000 (1)
NanoACQUITY UPLC (1)
Orbitrap Exploris 240 (1)
Orbitrap Exploris 480 (1)
Q Exactive HF-X (1)
Q Exactive Plus (1)
Synapt G2 HDMS (1)
Various (1)
Xevo G2 Q-Tof (1)

Publication Date

2014 (129)
2016 (106)
2015 (89)
2017 (62)
2020 (54)
2023 (52)
2022 (52)
2019 (52)
2024 (50)
2025 (42)
2021 (40)
2026 (36)
2018 (32)
2013 (26)
2009 (1)

UNIPROT ID/AC

9544.ENSMMUP00000001915 (20)
9544.ENSMMUP00000014596 (20)
9544.ENSMMUP00000032006 (20)
A0A1D5Q0G5_MACMU (20)
A0A1D5Q3Q0_MACMU (20)
A0A1D5Q4H6_MACMU (20)
A0A1D5Q6G0_MACMU (20)
A0A1D5Q8I4_MACMU (20)
A0A1D5QD91_MACMU (20)
A0A1D5QFC1_MACMU (20)
A0A1D5QHM1_MACMU (20)
A0A1D5QPK0_MACMU (20)
A0A1D5QQX5_MACMU (20)
A0A1D5QUV8_MACMU (20)
A0A1D5QWS0_MACMU (20)
A0A1D5QWX3_MACMU (20)
A0A1D5QZ63_MACMU (20)
A0A1D5R0N5_MACMU (20)
A0A1D5R1E0_MACMU (20)
A0A1D5R3Q8_MACMU (20)
A0A1D5R480_MACMU (20)
A0A1D5R7W8_MACMU (20)
A0A1K0FU77_MACMU (20)
A0A5F7ZA21_MACMU (20)
A0A5F7ZM61_MACMU (20)
A0A5F7ZZJ7_MACMU (20)
A0A5F8A477_MACMU (20)
A0A5F8A4A2_MACMU (20)
A0A5F8A8A6_MACMU (20)
A0A5F8A9E2_MACMU (20)

ENSEMBL ID

ENSG00000170477 (156)
ENSG00000229353 (64)
ENSG00000147251 (59)
ENSG00000247315 (46)
ENSG00000204131 (12)
ENSMUSP00000141097 (10)
ENSMUSG00000098557 (6)
ENSG00000214897 (5)
ENSMUSG00000021039 (4)
ENSMUSG00000027651 (4)
ENSMUSP00000141542 (4)
ENSMUSG00000090272 (3)
ENSG00000176092 (2)
ENSMUSG00000072849 (2)
ENSMUSG00000096833 (2)
ENSMUSP00000141637 (2)
ENSMUSG00000076514 (1)
ENSMUSG00000076532 (1)
ENSMUSG00000076562 (1)
ENSMUSG00000076668 (1)
ENSMUSG00000076695 (1)
ENSMUSG00000093894 (1)
ENSMUSG00000093896 (1)
ENSMUSG00000094075 (1)
ENSMUSG00000094194 (1)
ENSMUSG00000094356 (1)
ENSMUSG00000094502 (1)
ENSMUSG00000094509 (1)
ENSMUSG00000094546 (1)
ENSMUSG00000094652 (1)

CHEBI ID

CHEBI:16015 (4)
CHEBI:16414 (4)
CHEBI:48430 (3)
CHEBI:16709 (3)
CHEBI:28300 (3)
CHEBI:27452 (3)
CHEBI:30763 (3)
CHEBI:16857 (3)
CHEBI:18132 (3)
CHEBI:15729 (3)
CHEBI:15428 (3)
CHEBI:18012 (3)
CHEBI:16335 (3)
CHEBI:16919 (3)
CHEBI:27897 (3)
CHEBI:17191 (3)
CHEBI:15354 (3)
CHEBI:17895 (3)
CHEBI:17295 (3)
CHEBI:28716 (3)
CHEBI:15756 (3)
CHEBI:40585 (2)
CHEBI:73809 (2)
CHEBI:174715 (2)
CHEBI:18049 (2)
CHEBI:16220 (2)
CHEBI:6857 (2)
CHEBI:2374 (2)
CHEBI:28324 (2)
CHEBI:73770 (2)

Metabolite Name

Fumarate (3)
Citrate (3)
Creatine (3)
Acanthicifoline (2)
2-Phenylethyl beta-D-glucopyranoside (2)
Coniferin (2)
Solanidine (2)
Tetradecanoic acid (2)
2-C-Methyl-D-erythritol 4-phosphate (2)
Betaine (2)
Artemisinin (2)
Propionylcarnitine (2)
Carnosine (2)
7-Methylguanine (2)
2-Methylbutyroylcarnitine (2)
Tetrahydrocortisone (2)
UMP (2)
Pyridoxine (2)
Phosphocholine (2)
Methyl palmitate (2)
Styrene (2)
Choline (2)
Nonanoic acid (2)
Taxifolin (2)
4-Hydroxybenzaldehyde (2)
Pentadecanoic acid (2)
Sebacic acid (2)
Alanine (2)
2-Hydroxycinnamic acid (2)
Riboflavin (2)

First Public Date

2026 (4)
2022 (4)
2017 (3)
2024 (2)
2023 (2)
2018 (2)
2025 (1)
2021 (1)
2020 (1)
2019 (1)
2014 (1)

Classification

bacteria (1)

Modification

57.021464 (3)
15.994915 (2)
-17.026549 (1)
-18.010565 (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
42.010565 (1)
4x(2)H labeled dimethylated residue (1)
56.026215 (1)

Study type

RNA-seq of coding RNA (3)
Proteomic profiling by mass spectrometer (1)
Transcription profiling by array (1)

Release Date

2020 (132)
2021 (125)
2015 (121)
2016 (120)
2022 (114)
2023 (100)
2024 (83)
2019 (80)
2018 (77)
2017 (72)
2014 (64)
2025 (55)
2013 (21)
2026 (9)
2012 (1)
2011 (1)
2010 (1)

Lab affiliation

The University of Melbourne (5)
Institute of Biochemistry II, Faculty of Medicine, Goethe University Frankfurt, Theodor-Stern-Kai 7, 60590 Frankfurt am Main, Germany. (4)
University of Sydney (4)
Faculty of Helath Sciences. University of Copenhagen. Copenhagen. Denmark (3)
Moffitt Cancer Center (3)
School of Biosciences, University of Sheffield, Sheffield, UK (3)
Systems Biology Ireland, University College Dublin (3)
Systems Biology Laboratory, Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency (3)
Children’s Medical Research Institute, Faculty of Medicine and Health, The University of Sydney, Westmead, NSW 2145, Australia (2)
College of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi 712100, P.R. China (2)
Department of Immunology, College of Basic Medical Science, China Medical University, Shenyang, Liaoning 110122, China (2)
Deputy Head (Research), Department of Biochemistry and Molecular Biology Head Immunoproteomics Laboratory Infection and Immunity Program Room 214, level 2, 15 Innovation Walk Monash Biomedicine Discovery Institute Monash University, Clayton Campus Clayton 3800 Victoria Australia (2)
Drug Discovery Moffitt Cancer Center Tampa, FL, USA (2)
ETH Zurich Prof. Dr. Ruedi Aebersold Institute of Molecular Systems Biology Head of Department of Biology HPT E 78 Auguste-Piccard-Hof 1 CH-8093 Zurich Switzerland (2)
Emory University School of Medicine Departments of Biochemistry and Neurology (2)
Faculty of Health Sciences, University of Copenhagen, Copenhagen, Denmark (2)
Institut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC), INSERM U1258/CNRS UMR 7104/Université de Strasbourg, 1 rue Laurent Fries, BP 10142, F-67404 Illkirch, France (2)
Institute of Biochemistry II, Goethe University School of Medicine, Theodor-Stern-Kai 7, 60590 Frankfurt am Main, Germany Buchmann Institute for Molecular Life Sciences, Goethe University Frankfurt, Riedberg Campus, Max-von-Laue-Straße 15, 60438 Frankfurt am Main, Germany (2)
Institute of Integrative Biology, University of Liverpool (2)
Institute of Molecular Biology (IMB) (2)
Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology (2)
Moffitt Cancer Center Tampa, FL, USA (2)
Molecular Genetics, RPTU Kaiserslautern (2)
Molecular Genetics, RPTU Kaiserslautern, Germany (2)
Molecular Oncology Moffitt Cancer Center Tampa, FL, USA (2)
Molecular Systems Immunology Group Turku Bioscience University of Turku P.O. Box 123, BioCity (Street adr. Tykistökatu 6 A, 7th floor) FIN-20521 Turku, Finland +358-40-718 4813 (Mobile) (2)
NICM HRI, Western Sydney University, NSW, Australia (2)
Plateforme protéomique 3P5-Necker, Université Paris Descartes - Structure Fédérative de Recherche Necker, INSERM US24/CNRS UMS3633, Paris 75014, France (2)
Princess Margaret Hospital University of Toronto University Health Network (2)
Proteomics Team, Nestlé Institute of Health Sciences, Lausanne, Switzerland (2)

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The ProteomeXchange consortium in 2026: making proteomics data FAIR.

Not available

S-EPMC12807779 | biostudies-literature

The ProteomeXchange consortium at 10 years: 2023 update.

Not available

S-EPMC9825490 | biostudies-literature

The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition.

Not available

S-EPMC5210636 | biostudies-literature

The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics.

Not available

S-EPMC7145525 | biostudies-literature

PRIDE Inspector Toolsuite: Moving Toward a Universal Visualization Tool for Proteomics Data Standard Formats and Quality Assessment of ProteomeXchange Datasets.

Not available

S-EPMC4762524 | biostudies-literature

Proteomic dataset of Paracentrotus lividus gonads of different sexes and at different maturation stages.

Not available

S-EPMC4960011 | biostudies-literature

ProteomeXchange provides globally coordinated proteomics data submission and dissemination.

Not available

S-EPMC3986813 | biostudies-literature

Re-analysis of an ultra-deep and quantitative saliva proteome

This is a re-analysis of the saliva metaproteome dataset by Grassl et al. (Grassl et al. 2016 Genome Med, 8(1):44 DOI: 10.1186/s13073-016-0293-0) available on ProteomeXchange PXD003028. The data was used as a case study for a method development study in which we developed metaproteomics based method...

ORGANISM(S): Homo sapiens (Human) Bacteria

2017-05-12 | PXD006366 | Pride

HUPO Plasma Proteome Project 2 (ProteomExchange)

Trauma patients vs Normals, EDTA-plasma, multipeptide proteins and N-glycoproteins

ORGANISM(S): Homo sapiens (Human)

2009-05-15 | PRD000073 | Pride

Brain microvessels ontogeny-ERI-INSERM28

Enriched forebrain microvessels from P5, P10 and adult mice. Transcript comparisons identified 5873 genes with FC>2 between ages and 93 pathways. The observations were confronted to proteome study using NanoLS-MS/MS and deposited on proteomeXchange platform under # PXD001718. The 2 techniques conver...

ORGANISM(S): Mus musculus

2016-01-10 | E-GEOD-67870 | biostudies-arrayexpress

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