Proteomics informed by transcriptomics

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Proteomics (23)
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Brevibacillus sp. (21)
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environmental samples (21)
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Crotalus durissus terrificus (21)
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Geobacillus kaustophilus HTA426 (21)
Homo sapiens (6)
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 (1)
Mus musculus (1)

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Homo sapiens (2)

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pride (21)
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Technology Type

Mass Spectrometry (21)
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Illumina NovaSeq 6000 (1)
Instrument (1)
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Publication Date

2025 (5)
2018 (4)
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2014 (2)
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CHEBI ID

CHEBI:28865 (1)

Metabolite Name

Taurocholic acid (1)

First Public Date

2026 (1)
2024 (1)
2021 (1)
2016 (1)
2015 (1)

Modification

4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (3)
Spatial transcriptomics by high-throughput sequencing (1)

Release Date

2025 (4)
2021 (3)
2018 (3)
2026 (2)
2022 (2)
2020 (2)
2017 (2)
2015 (2)
2014 (2)
2019 (1)
2011 (1)
2010 (1)
2012 (1)

Lab affiliation

Parasitology Laboratory, Institute of Natural Resources and Agrobiology (IRNASA, CSIC). Cordel de Merinas, 40-52, 37008 Salamanca, Spain. (4)
Bioinformatics, TruDiagnostic, USA (1)
Biogenouest Proteomics Core Facility IRSET – INSERM U1085 Rennes, France (1)
Sanquin Research, department of Plasma Proteins, Plesmanlaan 125, 1066 CX, Amsterdam, the Netherlands (1)
School of Natural Sciences, Macquarie University, Sydney, Australia Biomolecular Discovery Research Centre, Macquarie University, Sydney, Australia Institute for Glyco-core Research (iGCORE), Nagoya University, Nagoya, 464-8601, Japan (1)
Systems Arbovirology, Leibniz Institute of Virology (LIV), Hamburg, Germany (1)
Institute of Systems Biology (INBIOSIS), University Kebangsaan Malaysia (UKM), 43600 Bangi, Selangor, Malaysia (1)
Parasitology Laboratory, Institute of Natural Resources and Agrobiology (IRNASA, CSIC). Cordel de Merinas, 40-52, 37008 Salamanca, Spain (1)
School of Medical Sciences, Faculty of Medicine and Healthy, University of Sydney, Sydney, Australia. (1)
School of Cellular and Molecular Medicine, University Walk, Bristol BS8 1TD (1)
School of Cellular and Molecular Medicine, Faculty of Biomedical Sciences, University of Bristol, Bristol, BS81TD (1)
Institute of Systems Biology, Universiti Kebangsaan Malaysia, 43600 UKM Bangi, Selangor, Malaysia. (1)
Sanquin Research, Amsterdam, NL (1)
Department of Biomedical Engineering, Rochester Institute of Technology, Rochester, USA (1)
Department of Plasma Proteins, Sanquin Research, Amsterdam, the Netherlands (1)
Laboratory of Molecular Neuro-Oncology, Department of Neurology, Clinical Neuroscience Center, University Hospital and University of Zurich, Frauenklinikstrasse 26, 8091 Zurich, Switzerland Department of Neurosurgery, Cantonal Hospital St.Gallen, Rorschacher Strasse 95, 9007 St.Gallen, Switzerland (1)
School of Food Science and Technology, Jiangnan University, Wuxi 214122, China; (1)
Experimental Pathology and Therapeutics Group, IPO Porto Research Center (CI-IPOP), Portuguese Oncology Institute (IPO Porto), 4200-072 Porto, Portugal (1)

Tags

xref:PubMed:41542644 (1)
xref:PubMed:39747819 (1)

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Proteomics Informed by Transcriptomics for Characterising Active Transposable Elements and Genome Annotation in Aedes aegypti

The incomplete genome annotation of non-model organisms hampers molecular and proteomic studies. Proteomics informed by transcriptomics (PIT) is suited to non-model organisms because peptides are identified using transcriptomic, not genomic, data. Aedes aegypti is the mosquito vector for the (re-)em...

ORGANISM(S): Aedes aegypti aegypti

2017-02-15 | PXD003799 | Pride

Proteomics Informed by Transcriptomics for Characterising Active Transposable Elements and Genome Annotation in Aedes Aegypti

PRJEB13078 | ENA

Galaxy Integrated Omics: Web-based Standards-Compliant Workflows for Proteomics Informed by Transcriptomics.

Not available

S-EPMC4638048 | biostudies-literature

Forty-Four Novel Protein-Coding Loci Discovered Using a Proteomics Informed by Transcriptomics (PIT) Approach in Rat Male Germ Cells.

Data from ProteomeXchange, PXD ID: PXD000872. File: SPC_exc02_compil.msf.mgf. Published as part of Biol Reprod. 2014 Sep 10 . From the Abstract: {{i}} Spermatogenesis is a complex process, dependent upon the successive activation and/or repression of thousands of gene products, and ends with the pr...

ORGANISM(S): Mus_musculus_viruses,rattus_norvegicus_papillomavirus_1_ees_2009_uid40233,rat_coronavirus_parker_uid39313, Rat

GPM32320003462 | GPMDB

Resource Reanalysis

Qualitative and quantitative proteomics informed by transcriptomics insight into the proteome of Ornithodoros erraticus adult tick saliva.

Anti-tick vaccines have proved to be an effective and sustainable method for the control of tick infestations and tick-borne diseases with clear advantages over the application of chemical acaricides (Šmit and Postma, 2016; de la Fuente, 2018; Ndawula and Tabor, 2020). Moreover, the efficacy of acar...

ORGANISM(S): Ornithodoros erraticus

2022-02-17 | PXD027367 | Pride

Lc msms Label free quantitaion Dia Ornithodoros erraticus proteome Swath

A proteomics informed by transcriptomics insight into the proteome of Ornithodoros erraticus adult tick saliva.

Not available

S-EPMC8722417 | biostudies-literature

Proteomics informed by transcriptomics for a qualitative and quantitative analysis of the sialoproteome of adult Ornithodoros moubata ticks.

Not available

S-EPMC8356541 | biostudies-literature

Proteomics informed by transcriptomics reveals Hendra virus sensitizes bat cells to TRAIL-mediated apoptosis.

Not available

S-EPMC4269970 | biostudies-literature