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ProteomicsStability assessment of the human proteotypic peptides for proteomics quantification
Mass spectrometry coupled to liquid chromatography is one of the most powerful technologies for proteome quantification in a variety of biomedical samples, including cells, tissues and liquid biopsies. In peptide-centric workflows protein mixtures proteins are enzymatically digested to peptides prio...
ORGANISM(S): Homo sapiens (Human) 
2025-02-24 | PXD035198 | Pride
Proteotypic Proteome tools Peptide stability Quantitation 
ProteomicsA mammalian transcription factor-specific peptide repository for targeted proteomics
Site-specific transcription factors (TFs) play an essential role in mammalian development and function as they are vital for the majority of cellular processes. Despite their biological importance, TF proteomic data is scarce in the literature, likely due to difficulties in detecting peptides as the...
ORGANISM(S): Mus musculus (Mouse) 
2015-01-23 | PXD001212 | Pride
Transcription factor Repository for targeted proteomics Proteotypic peptide selection Quantitative proteomics 
UnknownPeptide Selection for Accurate Targeted Protein Quantification via a Dimethylation High-Resolution Mass Spectrum Strategy with a Peptide Release Kinetic Model.
Not available
S-EPMC7057324 | biostudies-literature
UnknownArtificial Intelligence Understands Peptide Observability and Assists With Absolute Protein Quantification.
Not available
S-EPMC6242780 | biostudies-literature
UnknownAlacatDesigner─Computational Design of Peptide Concatamers for Protein Quantitation.
Not available
S-EPMC9903321 | biostudies-literature
ProteomicsProteotypic peptides for SARS-CoV-2 variant detection
The recent SARS-CoV-2 omicron variant presented significant challenges to the global effort to counter the pandemic. SARS-CoV-2 is predicted to remain prevalent in the coming months, making the ability to identify SARS-CoV-2 variants imperative in understanding and controlling the pandemic. The pred...
ORGANISM(S): Severe acute respiratory syndrome coronavirus 2 
2022-10-12 | PXD033777 | Pride
Sars-cov-2 Lcms 
TranscriptomicsHer2/Neu breast cancer mouse model transcriptome
Purpose: We generated extensive transcriptional and proteomic profiles from a Her2-driven mouse model of breast cancer that closely recapitulates human breast cancer. This report makes these data publicly available in raw and processed forms, as a resource to the community. Importantly, we previousl...
ORGANISM(S): Mus musculus 
2010-10-18 | GSE20280 | GEO
TranscriptomicsHer2/Neu breast cancer mouse model whole tissue transcriptome
Purpose: We generated extensive transcriptional and proteomic profiles from a Her2-driven mouse model of breast cancer that closely recapitulates human breast cancer. This report makes these data publicly available in raw and processed forms, as a resource to the community. Importantly, we previousl...
ORGANISM(S): Mus musculus 
2010-10-22 | GSE20465 | GEO
TranscriptomicsHer2/Neu breast cancer mouse model transcriptome
Purpose: We generated extensive transcriptional and proteomic profiles from a Her2-driven mouse model of breast cancer that closely recapitulates human breast cancer. This report makes these data publicly available in raw and processed forms, as a resource to the community. Importantly, we previo...
ORGANISM(S): Mus musculus 
2010-10-18 | E-GEOD-20280 | biostudies-arrayexpress
TranscriptomicsHer2/Neu breast cancer mouse model whole tissue transcriptome
Purpose: We generated extensive transcriptional and proteomic profiles from a Her2-driven mouse model of breast cancer that closely recapitulates human breast cancer. This report makes these data publicly available in raw and processed forms, as a resource to the community. Importantly, we previo...
ORGANISM(S): Mus musculus 
2010-10-22 | E-GEOD-20465 | biostudies-arrayexpress
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