Proximal labeling

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2x(15)N labeled L-lysine (2)
-17.026549 (1)
15.994915 (1)
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Transcription profiling by array (3641)
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Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (14)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (3)
Centre for Developmental Neurobiology, King's College London (2)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (2)
Department of Cell Biology and Physiology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599 (2)
Department of Chemistry, University of California, Riverside (2)
Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences (RIMLS), Oncode Institute, Radboud University Nijmegen, 6525 GA Nijmegen, The Netherlands Division of Molecular Genetics, The Netherlands Cancer Institute, 1066CX, Amsterdam, The Netherlands (2)
Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE, USA. (2)
Department of Systems Pharmacology and Translational Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA (2)
Epithelial Systems Biology Laboratory Systems Biology Center Division of Intramural Research National Heart, Lung and Blood Institute Building 10, Room 6N307 Bethesda, Maryland 20895-1603 (2)
Georg-August-University Göttingen, Department of Molecular Microbiology and Genetics, Institute of Microbiology and Genetics (2)
1 VIB Center for Medical Biotechnology, VIB, B-9000 Ghent, Belgium 2 Department of Biochemistry, Ghent University, B-9000 Ghent, Belgium (1)
1. Microbial and Environmental Genomics, J. Craig Venter Institute, La Jolla, CA 92037, USA 2. Integrative Oceanography Division, Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA 92093, USA (1)
Anesthesiology & Perioperative Medicine Oregon Health & Science University 3181 SW Sam Jackson Park Road Portland, Oregon 97239, USA (1)
Assistant professor, Biochemistry and Molecular Biology, Johns Hopkin Bloomberg Schools of Public Health, USA. (1)
Assistant professor, School of Biological Sciences, Seoul National University. (1)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (1)
Bioanalytical Mass Spectrometry Group, Max Planck Institute for Multidisciplinary Sciences, 37077 Göttingen, Germany. (1)
Bioanalytical Mass Spectrometry, Max Planck Institute for Multidisciplinary Sciences, Am Fassberg 11, 37077 Göttingen, Germany Bioanalytics, Institute of Clinical Chemistry, University Medical Center Göttingen, 37075 Göttingen, Germany (1)
Boston Children's Hospital, Boston, MA. Department of Urology and Harvard Medical School, Boston, MA. Department of Surgery (1)
CAS Key Laboratory of Separation Science for Analytical Chemistry, National Chromatographic R & A Center, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, China. (1)
CEITEC, Masaryk University Molecular medicine department, RNA and immunity group (1)
Cancer Metabolism and Microenvironment Program, NCI-Designated Cancer Center, Sanford Burnham Prebys Medical Discovery Institute (1)
Carnegie MS facility (1)
Cell Biology Department, Harvard Medical School (1)
Cell and Chemical Biology at the Leiden University Medical Center (1)
Cell biology, neurobiology and neurophysics, Utrecht University, Utrecht, Netherlands (1)
Cellular Proteomics Group Helmholtz Centre for Infection Research Inhoffenstr. 7 38124 Braunschweig Germany (1)
Centre for Developmental Neurobiology, King’s College London, UK (1)
Chair of Immunobiology, Yale University (1)

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Expression data for 52 microsatellite stable (MSS) primary tumors from patients with proximal colon cancer.

Samples were taken from surgically resected tumor specimens from patients with proximal colon cancer. The expression profiles were determined using the Affymetrix GeneChip Human Exon 1.0 ST Array version 2. APC gene mutation status was determined using Sanger sequencing. A classifier for APC mutatio...

ORGANISM(S): Homo sapiens

2016-03-02 | E-GEOD-63624 | biostudies-arrayexpress

C-peptide regulates early transcription in rat proximal tubular cells

C-peptide exerts beneficial effects on glomerular hyperfiltration in type I diabetic patients. As C-peptide localizes to the nucleus, we investigated the transcriptional activities of C-peptide in proximal tubular cells isolated from diabetic rats. Two groups of proximal tubular cells isolated from ...

ORGANISM(S): Rattus norvegicus

2011-07-26 | E-GEOD-24687 | biostudies-arrayexpress

Resistant starch induces catabolic but suppresses immune and cell division pathways and changes the microbiome in proximal colon of male pigs

Consumption of resistant starch (RS) has been associated with various intestinal health benefits, but knowledge on its effects on global gene expression in the colon is limited. The main objective of the current study was to identify genes affected by RS in the proximal colon to infer which biologic...

ORGANISM(S): Sus scrofa

2013-10-18 | E-GEOD-45554 | biostudies-arrayexpress

Transcription profiling of mouse Clcn5 knockout in proximal tubules of the kidney

Dent disease has multiple defects attributed to proximal tubule malfunction including low molecular weight proteinuria, aminoaciduria, phosphaturia and glycosuria. In order to understand the changes in kidney function of the Clc5 transporter gene knockout mouse model of Dent disease, we examined gen...

ORGANISM(S): Mus musculus

2008-06-11 | E-GEOD-10162 | biostudies-arrayexpress

Transcription profiling of rat proximal femoral growthplate after mid-shaft fracture

Mid-shaft fracture stimulates bone lengthening by increasing linear growth at the growthplate. This project studied changes in mRNA in the proximal growthplate after a mid-shaft fracture in a rat model. Experiment Overall Design: Study of rat proximal femoral growthplate after mid-shaft fracture in...

ORGANISM(S): Rattus norvegicus

2008-06-12 | E-GEOD-3298 | biostudies-arrayexpress

Profiling of Transcripts in Rat Proximal Tubule

Freshly isolated rat kidney proximal tubules were subjected for transcript profiling. Three microarray experiments were done to obtain the kidney proxmial tubule transcriptome.

ORGANISM(S): Rattus norvegicus

2009-01-26 | E-GEOD-13668 | biostudies-arrayexpress

Quantitative proteogenomic characterization of inflamed murine colon tissue using an integrated discovery, verification, and validation proteogenomic workflow

Rag2-/-Il10-/- mice were subjected to infection by Helicobacter hepaticus and allowed to develop long-term infections. Proximal colon tissue was then harvested from the mice for analysis. RNA was isolated from the samples and submitted for transcriptomic analysis; this data was then used to create a...

ORGANISM(S): Mus musculus (Mouse)

2022-05-19 | PXD028407 | Pride

Suborganelle-specific protein complexes analysis enabled by in-vivo crosslinking coupled with proximal labeling

ORGANISM(S): Homo Sapiens (human)

2022-06-21 | PXD034768 | JPOST Repository

Profiling the diversity of agonist-selective effects on the proximal proteome environment of G protein-coupled receptors

G-protein coupled receptors (GPCRs) regulate various aspects of cellular behavior and represent actionable targets for drug discovery. Activation of specific signaling pathways downstream of G-protein coupled receptors (GPCRs) or targeting the receptors at selected cellular locations has the potenti...

ORGANISM(S): Homo Sapiens

2024-03-31 | PXD031393 | panorama

Circadian Gene Expression in Mouse Renal Proximal Tubule

Circadian variability in kidney function has long been recognized but is often ignored as a potential confounding variable in in vivo physiological experiments. To provide a guide for physiological studies on the kidney proximal tubule, we have now created a data resource consisting of expression le...

ORGANISM(S): Mus musculus (Mouse)

2023-04-10 | PXD039006 | Pride

Circadian variation Proteomics Proximal tubule Transcriptomics

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