Proximity-labeling

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CHEBI ID

CHEBI:15741 (2)
CHEBI:6650 (2)
CHEBI:18012 (2)
CHEBI:32816 (2)
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CHEBI:25801 (1)
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Metabolite Name

Uracil M+4 (1)
Uracil M+3 (1)
Uracil M+2 (1)
Uracil M+1 (1)
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Adenine M+5 (1)
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Adenosine M+6 (1)
Adenosine M+5 (1)
Adenosine M+4 (1)
Adenosine M+3 (1)
Adenosine M+2 (1)

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Modification

N6 (1)
N6-dimethyl-L-lysine (1)
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Study type

Transcription profiling by array (9)
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Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (17)
Molecular Genetics, RPTU Kaiserslautern, Germany (7)
Ghent University, Department of Plant Biotechnology and Bioinformatics, Technologiepark 71, 9052 Ghent, Belgium VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium (5)
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Max Planck Institute for Terrestrial Microbiology Karl-von-Frisch Str. 10 35043 Marburg Germany (4)
Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, 6525 GA Nijmegen, The Netherlands (4)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (4)
VIB-UGent Center for Medical Biotechnology (3)
Center of Human and Molecular Biology (ZHMB), Saarland University School of Medicine, Homburg, Germany (3)
Whitehead Institute for Biomedical Research and Massachusetts Institute of Technology (3)
Department of Chemistry, University of California, Riverside (3)
Carnegie Institution at Stanford (3)
UCSF (3)
Carnegie Mass Spectrometry Facility (3)
School of Biological Sciences,Department of Cell and Developmental Biology, University of California, San Diego, CA, USA (2)
Georg-August University, Institute of Microbiology and Genetics, Department of Genetics of Eukaryotic Microorganisms (2)
Human Phenome Institute,Zhangjiang FudanInternational Innovation Center, Fudan UniversityShanghai, 201203, China. (2)
Department of Systems Pharmacology and Translational Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA (2)
Ori Research Group, The Leibniz Institute on Aging – Fritz Lipmann Institute, Jena, Germany (2)
Department of Cell Biology and Physiology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599 (2)
Chair, Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, USA (2)
State Key Laboratory of Medical Proteomics, National Chromatographic R. & A. Center, CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian 116023, China. (2)
Koç University, Department of Molecular Biology and Genetic Cell Biology Lab head (2)
Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE, USA. (2)
The Hong Kong University of Science and Technology (2)
Chemistry Department, Wayne State University, US (2)
UC Berkeley (2)
Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China (2)

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In vivo proximity labeling and sequencing (IPL-seq) for SNRPN70 in 293T-Rex

This proof-of-principle experiment was designed to demonstrate the feasibility of proximity labeling for RNAM-bM-^@M-^Sprotein interactions IPL-seq on 293T-Rex expressing MSA-SNRPN70 (sample) or NFH-SNRPN70 (control)

ORGANISM(S): Homo sapiens

2014-10-24 | E-GEOD-55370 | biostudies-arrayexpress

Bioluminescence-activated proximity labeling for spatial multi-omics

PRJNA1154663 | ENA

RNA proximity labeling in log phase Caulobacter crescentus NA1000

PRJNA1266958 | ENA

Multi-omic proximity labeling in vivo with PRADA

PRJNA1503416 | ENA

Off-the-shelf proximity labeling

PRJNA716256 | ENA

Photocatalytic Proximity Labeling Maps RNA and Protein Subcellular Landscapes

PRJNA1299343 | ENA

Analysis of subcellular transcriptomes by RNA proximity labeling with Halo-seq

PRJNA722745 | ENA

PUP-IT2 as an proximity labeling strategy

All proximity labeling involves the genetic fusion of the proximity labeling enzyme with the bait protein. In this study, we tested an alternative proximity labeling strategy, PUP-IT2, in which only a small protein is fused to the bait protein.

ORGANISM(S): Homo Sapiens

2022-08-12 | PXD036047 |

ERα Micromap (µMap) proximity labeling reveals novel fulvestrant mechanisms

PRJNA1466951 | ENA

Mapping glycan-mediated galectin-3 interactions by live cell proximity labeling

Galectin-3 is a glycan-binding protein (GBP) that binds β -galactoside glycan structures to orchestrate a variety of important biological events, including the activation of hepatic stellate cells and regulating immunological responses. While the requisite glycan epitopes needed to bind galectin-3 h...

ORGANISM(S): Homo sapiens (Human)

2021-06-16 | PXD021622 | Pride

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