Pti - OmicsDI

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Transcriptomics (1003)
Unknown (457)
Genomics (140)
Proteomics (57)
Metabolomics (5)

Organisms

Homo sapiens (247)
Mus musculus (190)
Arabidopsis thaliana (74)
Saccharomyces cerevisiae (56)
Drosophila melanogaster (49)
Schizosaccharomyces pombe (35)
Rattus norvegicus (30)
Rhizobium leguminosarum (29)
Mycobacterium tuberculosis (25)
Danio rerio (20)
Sus scrofa (15)
Apis mellifera (11)
Geobacter sulfurreducens (11)
Candida albicans (10)
Gallus gallus (8)
Bacillus amyloliquefaciens (7)
Hordeum vulgare (7)
Mycobacterium avium subsp. paratuberculosis (6)
Mycobacterium tuberculosis H37Rv (6)
Caenorhabditis elegans (6)
Xenopus laevis (5)
Zea mays (5)
Enterococcus faecalis (5)
Neisseria gonorrhoeae (4)
Lepidium sativum (4)
Streptococcus pneumoniae (4)
Bos taurus (4)
Streptococcus mutans (3)
Photobacterium profundum (3)
Bacillus subtilis subsp. subtilis str. 168 (3)

Organisms

Arabidopsis thaliana (27)
Solanum lycopersicum (2)
Oryza sativa (2)
Oryza sativa Japonica Group (2)
Pseudomonas syringae pv. tomato str. DC3000 (1)
Vitis quinquangularis (1)
Agrobacterium tumefaciens (1)
Nicotiana benthamiana (1)
Thlaspi arvense (1)
Hordeum vulgare (1)
Brassica rapa subsp. pekinensis (1)
Prunus persica (1)
Ipomoea batatas (1)
unidentified (1)
Agrobacterium fabrum (1)
Brassica napus (1)
Triticum aestivum (1)
Vitis vinifera (1)
Lactuca sativa (1)
Glycine max (1)
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Homo sapiens (1)

Repository

biostudies-arrayexpress (1029)
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geo (35)
pride (31)
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MetaboLights (5)
PanoramaPublic (2)
PAXDB (1)

Tissue

Plant cell (12)
Leaf (10)
Whole body (5)
Cell suspension culture (2)
Seed (1)
Root (1)
Photosynthetic cell (1)
Rosette (1)
Cell culture (1)

Disease

Normal (10)
Hyperglycaemic (2)
Large cell neuroendocrine carcinoma (1)
Oropharynx squamous-cell carcinoma in DiseaseLocation oropharynx has DiseaseStaging lymph node negative (N0) (1)
T. circumcincta infection (1)
Not applicable (1)
Myeloid neoplasm (1)
Phyllodes tumor (1)
Low-stage neuroblastoma (1)
Colon cancer Dukes C (1)
Embryonic lethal at day 8.5 to 9.5 (1)
Post-stasis (1)
Blumeria graminis hordei (powdery mildew) inoculation (1)
Hypertension (1)
Insulin resistance (1)
Pancreatic ductal adenocarcinoma (1)
Infected with Influenza A/WSN/33 (H1N1) (1)
Infiltrating ductal carcinoma (1)
Infected (1)
Marsh 3 (1)
Primary tumor (1)
Oligodendroglioma (1)
Dukes D primary colon cancer (1)
Mock infected (1)
Colon cancer metastasis (1)
Infected (1)
Not yet visible (1)
Rheumatoid arthritis (1)
Colorectal cancer (1)
IBDV infected (1)

Technology Type

Mass Spectrometry (31)
Shotgun proteomics (18)
Bottom-up proteomics (7)
Data-dependent acquisition (5)
Mass spectrometry (4)
Affinity purification coupled with mass spectrometry proteomics (3)
Gel-based experiment (2)
Mass spectrometry assay (1)
HDMSE (1)
SWATH MS (1)
Data-independent acquisition (1)
SRM/MRM (1)

Instrument Platform

Illumina HiSeq 2500 (26)
NextSeq 500 (24)
Illumina HiSeq 4000 (23)
Illumina NovaSeq 6000 (17)
Illumina HiSeq 2000 (16)
Axon GenePix 4000B scanning hardware (10)
Illumina Genome Analyzer II (8)
G2565AA DNA microarray scanner [Agilent] (7)
ScanArray 5000 [PerkinElmer] (6)
GenePix 4000B [Axon Instruments] (6)
Scanning hardware (5)
Vortex (5)
Illumina MiSeq (5)
Helicos HeliScope (4)
Axon- GenePix4000B (4)
NextSeq 2000 (4)
NextSeq 550 (4)
Illumina Genome Analyzer (3)
GenePix Professional 4200A [Axon Instruments] (3)
G2565BA DNA microarray scanner [Agilent] (3)
Illumina NovaSeq X (3)
MinION (3)
Sequel II (2)
Complete Genomics (2)
Agilent 2100 Bioanalyzer (2)
ScanArray Express HT [PerkinElmer] (2)
DNBSEQ-G400 (2)
DNBSEQ-T7 (2)
BGISEQ-500 (2)
Maxwell® RSC 48 Instrument (Promega, AS8500) (1)

Publication Date

2010 (138)
2013 (105)
2012 (96)
2008 (84)
2011 (73)
2015 (68)
2014 (68)
2009 (59)
2007 (49)
2006 (39)
2016 (38)
2021 (36)
2005 (34)
2004 (33)
2023 (26)
2024 (25)
2022 (24)
2025 (23)
2019 (21)
2026 (20)
2020 (20)
2017 (20)
2018 (16)
2003 (4)
2002 (1)

UNIPROT ID/AC

AGO1D_ORYSJ (1)
Q337T3_ORYSJ (1)
B7EA34_ORYSJ (1)
A0A0P0WU30_ORYSJ (1)
Q6K9T9_ORYSJ (1)
A0A0P0XK57_ORYSJ (1)
B9FMH1_ORYSJ (1)
Q657F3_ORYSJ (1)
Q0DTB8_ORYSJ (1)
A0A0P0WZQ8_ORYSJ (1)
AB51G_ORYSJ (1)
Q338P6_ORYSJ (1)
CK5P1_ORYSJ (1)
A0A0P0W5I6_ORYSJ (1)
LOX3_ORYSJ (1)
ACA5_ORYSJ (1)
A0A0P0X9Y2_ORYSJ (1)
Q7XVG5_ORYSJ (1)
GLU2A_ORYSJ (1)
A0A0P0Y6M0_ORYSJ (1)
Q0E423_ORYSJ (1)
Q2RAP8_ORYSJ (1)
Q69S88_ORYSJ (1)
Q5JK37_ORYSJ (1)
Q6YT57_ORYSJ (1)
Q6Z6H8_ORYSJ (1)
Q5JML8_ORYSJ (1)
Q6YYB9_ORYSJ (1)
BGL29_ORYSJ (1)
Q0DY58_ORYSJ (1)

CHEBI ID

CHEBI:4167 (2)
CHEBI:16857 (2)
CHEBI:17115 (2)
CHEBI:16977 (2)
CHEBI:17053 (2)
CHEBI:16414 (2)
CHEBI:422 (2)
CHEBI:17203 (2)
CHEBI:18012 (2)
CHEBI:30769 (2)
CHEBI:17568 (2)
CHEBI:16958 (2)
CHEBI:15741 (2)
CHEBI:167608 (1)
CHEBI:67168 (1)
CHEBI:167607 (1)
CHEBI:167606 (1)
CHEBI:17485 (1)
CHEBI:49728 (1)
CHEBI:40595 (1)
CHEBI:17877 (1)
CHEBI:88378 (1)
CHEBI:84758 (1)
CHEBI:132968 (1)
CHEBI:84687 (1)
CHEBI:72742 (1)
CHEBI:35374 (1)
CHEBI:35145 (1)
CHEBI:32796 (1)
CHEBI:18381 (1)

Metabolite Name

Xylulose-5P (1)
UDP-hexose (1)
UDP-HexNac (1)
Sedoheptulose-7P (1)
Oxiglutathione (1)
Homocystine (1)
Hexose-P (1)
Glycerol-2P (1)
Glyceraldehyde-3P (1)
Glucose-6P (1)
Gluconate-6P (1)
FAICAR (1)
Erythrose-4-phosphate (1)
Dihydroxyacetone-P (1)
Creatine-P (1)
Coenzyme_A (1)
Cis-Aconitate (1)
ADP-Ribose (1)
Acetylglutamic acid (1)
6-Phosphogluconolactone (1)
2-phosphoglyceric acid (1)
2-Dehydrogluconate-6P (1)
2-Dehydrogluconate (1)
Tetrahexosylceramide (d18:1/16:0) (1)
LysoPC(18:1[9Z]) (1)
Trihexosylceramide (d18:1/16:0) (1)
2-Hydroxyglutarate (1)
Fructose-1,6-diphosphate (1)
3-phosphoglyceric acid (1)
Unknown 21, RT(min) = 22.9 (1)

First Public Date

2024 (19)
2022 (12)
2026 (11)
2025 (11)
2021 (8)
2020 (7)
2023 (5)
2017 (3)
2014 (3)
2019 (2)
2018 (1)
2015 (1)
2013 (1)

Study type

Transcription profiling by array (643)
RNA-seq of coding RNA (142)
Comparative genomic hybridization by array (27)
ChIP-seq (27)
ChIP-chip by array (25)
RNA-seq of non coding RNA (21)
Other (19)
RNA-seq of total RNA (14)
Unknown experiment type (11)
Animal - High-throughput sequencing (10)
Methylation profiling by high throughput sequencing (10)
ChIP-chip by tiling array (8)
Transcription profiling by tiling array (8)
DNA-seq (8)
RNA-seq of coding RNA from single cells (8)
Methylation profiling by array (7)
MicroRNA profiling by array (4)
Human - High-throughput sequencing (2)
Cell line - High-throughput sequencing (2)
RNAi profiling by array (2)
Genotyping by array (2)
MicroRNA profiling by high throughput sequencing (2)
Proteomic profiling by array (2)
PRO-seq (1)
GRO-seq (1)
Differential (1)
MicroRNA profiling by high-throughput sequencing (1)
Plant - One-color microarray (1)
Translation profiling (1)
High-throughput sequencing (1)

Release Date

2010 (141)
2013 (114)
2012 (104)
2008 (85)
2015 (81)
2022 (80)
2011 (80)
2014 (76)
2021 (75)
2024 (64)
2009 (63)
2025 (59)
2023 (57)
2019 (54)
2016 (53)
2007 (51)
2020 (48)
2006 (39)
2018 (38)
2005 (34)
2004 (33)
2017 (31)
2026 (21)
2003 (4)
2002 (1)

Lab affiliation

Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (5)
The Sainsbury Laboratory (2)
Westlake University (2)
Pusan National University, South Korea (1)
Swedish University of Agricultural Sciences, Department of Plant Protection Biology (1)
Institute of Paulownia, Henan Agricultural University, Zhengzhou, Henan, 450002, P. R. China (1)
Norwegian University of Science and Technology (NTNU), Department of Biology, Functional Plant Biology Group, Norway (1)
Laboratório de Química e Função de Proteínas e Peptídeos, Centro de Biociências e Biotecnologia (CBB), Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Av. Alberto Lamego, Campos dos Goytacazes, RJ, Brazil. (1)
Forschungszentrum Jülich ZEA-3 Analytik (1)
University Tübingen, Center for Plant Molecular Biology, Department of Plant Biochemistry, Germany (1)
College of Plant Protection, China Agricultural University, Beijing 100193, China (1)
Leibniz Institute of Plant Biochemistry; Center for Structural Mass Spectrometry, Institute of Pharmacy, Martin-Luther University Halle-Wittenberg (1)
King Abdullah University of Science and Technology, Thuwal, Saudi Arabia (1)
Leibniz Institute of Plant Biochemistry Research Group Proteome Biology of Plant Interactions (1)
Department of Plant Bioscience, Pusan National University, Miryang 50463, South Korea (1)
Department of Plant Pathology, University of Georgia, Athens, Georgia, USA (1)
Bavarian Center for Biomolecular Mass Spectrometry, Freising, TU Munich (1)
Max Planck Institute for Plant Breeding Research Plant Proteomics Group Carl von Linné Weg 10 50829 Cologne Germany (1)
Swedish University of Agricultural Sciences (1)
Eberhard-Karls-Universität Tübingen, Center of Plant Molecular Biology, Department of Plant Biochemistry, Auf der Morgenstelle 32, D-72076 Tübingen, Germany (1)
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, 50463, Republic of Korea (1)
Academia Sinica (1)
Proteome Analytics Leibniz Institute of Plant Biochemistry (1)
Department of Biology, Genetics Institute, Plant Molecular and Cellular Biology Program, Interdisciplinary Center for Biotechnology Research, University of Florida, Gainesville, FL, USA (1)
University of Warwick (1)

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Expression analysis of Arabidopsis transgenic plants carrying DEX-inducible MKK4DD in Col or sid2 background treated with DEX or control

Effector-Triggered Immunity (ETI) and Pattern-Triggered Immunity (PTI) are well-defined modes of plant immunity triggered by recognition of pathogen effector proteins and microbe-associated molecular patterns, respectively. While ETI and PTI network extensively share signaling components, the shared...

ORGANISM(S): Arabidopsis thaliana

2014-07-29 | E-GEOD-40547 | biostudies-arrayexpress

Expression analysis of Arabidopsis plants infected with Pseudomonas syringae pv. tomato DC3000 (Pto) strains

ORGANISM(S): Arabidopsis thaliana

2014-07-29 | E-GEOD-40544 | biostudies-arrayexpress

Genome-wide ATAC-seq on Arabidopsis for studying the regulatory chromatin landscape of PTI and ETI

PRJEB38923 | ENA

Genome-wide ATAC-seq on Arabidopsis for studying the regulatory chromatin landscape of PTI and ETI

PRJEB34959 | ENA

Interactions between effector-triggered immunity (ETI) and pattern-triggered immunity (PTI) in an Arabidopsis dde2 ein2 pad4 sid2 mutant

We observed inhibition of the hypersensitive response (a typical ETI response) by PTI signaling in an Arabidopsis quadruple mutant dde2 ein2 pad4 sid2 (quad). Thus, we designed an experiment to see the interaction between ETI and PTI signaling at the transcriptome level. The Arabidopsis line dde2 ei...

ORGANISM(S): Arabidopsis thaliana

2017-08-07 | GSE98075 | GEO

Early ETI and PTI responses in Arabidopsis thaliana camta3-D (sr1-4d) mutant

Innate immune responses of plant cells confer the first line of defence against pathogens. Signals generated by activated receptors are integrated inside the cell and converge on transcriptional programmes in the nucleus. In Arabidopsis, the CAMTA family of transcription factors plays a pivotal func...

ORGANISM(S): Arabidopsis thaliana

2017-12-11 | GSE92702 | GEO

PTI-ETI synergistic signal mechanisms in plant immunity.

Not available

S-EPMC11258992 | biostudies-literature

Global transcriptomic profiling of PTI- and ETI-responsive genes in wild-type Col-0 and mutant rh3 Arabidopsis thaliana plants

Plants utilize a two-tiered immune system, called pattern-triggered immunity (PTI) and effector-triggered immunity (ETI), to recognise and defend against pathogens. PTI acts as the first line of defense, limiting pathogen invasion, whereas ETI provides a stronger response that potentiates PTI signal...

ORGANISM(S): Arabidopsis thaliana

2026-03-18 | E-MTAB-15957 | biostudies-arrayexpress

Global transcriptomic profiling of PTI- and ETI-responsive genes in wild-type Col-0 and mutant rh3 Arabidopsis thaliana plants

PRJEB102106 | ENA

An eEF1A1 truncation encoded by PTI-1 exerts its oncogenic effect inside the nucleus.

Not available

S-EPMC3941776 | biostudies-literature