Pull-down assays

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Unknown (2317)
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Organisms

Aerococcus urinae NBRC 15544 = CCUG 36881 (127)
Andropogon gerardi (127)
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synthetic construct (1)
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Organisms

Homo sapiens (45)
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Escherichia coli str. K-12 substr. MG1655 (1)
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Repository

pride (127)
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geo (68)
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Technology Type

Mass Spectrometry (127)
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SWATH MS (3)
DiaPASEF (2)
MSE (2)
Proteogenomics (2)
RNA mass spectrometry (2)
Mass spectrometry (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Top-down proteomics (1)

Instrument Platform

Illumina HiSeq 2000 (3)
NextSeq 500 (2)
Q Exactive (2)
Axon GenePix4000B (1)
Illumina HiSeq 2500 (1)
MS (1)
Orbitrap Eclipse (1)
Orbitrap Exploris 480 (1)
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TripleTOF 5600+ (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2023 (47)
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2024 (33)
2022 (22)
2026 (21)
2020 (20)
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2015 (10)
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2019 (10)
2014 (6)
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2017 (5)
2010 (4)
2012 (3)
2008 (3)
2016 (2)
2011 (2)
2009 (1)

UNIPROT ID/AC

AGL10_HALVD (1)
AGL6_HALVD (1)
AGL7_HALVD (1)
AGLB_HALVD (1)
AGLG_HALVD (1)
AGLP_HALVD (1)
ALF_HALVD (1)
ANTRB_HALVD (1)
CAS5_HALVD (1)
CAS6_HALVD (1)
CAS7_HALVD (1)
CAS8B_HALVD (1)
CETZ1_HALVD (1)
CETZ6_HALVD (1)
CSG_HALVD (1)
D4GP04_HALVD (1)
D4GP38_HALVD (1)
D4GP47_HALVD (1)
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D4GP51_HALVD (1)
D4GP72_HALVD (1)
D4GP86_HALVD (1)
D4GP88_HALVD (1)
D4GPA0_HALVD (1)
D4GPA1_HALVD (1)
D4GPA8_HALVD (1)
D4GPB6_HALVD (1)
D4GPB9_HALVD (1)
D4GPC8_HALVD (1)
D4GPD3_HALVD (1)

CHEBI ID

CHEBI:80723 (1)
CHEBI:31297 (1)
CHEBI:10086 (1)
CHEBI:80541 (1)
CHEBI:31826 (1)
CHEBI:34985 (1)
CHEBI:34983 (1)
CHEBI:1720 (1)
CHEBI:1182 (1)
CHEBI:79694 (1)
CHEBI:79480 (1)
CHEBI:79904 (1)
CHEBI:79869 (1)
CHEBI:31825 (1)
CHEBI:9390 (1)
CHEBI:7776 (1)
CHEBI:4816 (1)
CHEBI:3575 (1)
CHEBI:27670 (1)
CHEBI:8770 (1)
CHEBI:63742 (1)
CHEBI:8343 (1)
CHEBI:135282 (1)
CHEBI:31946 (1)
CHEBI:63731 (1)
CHEBI:79705 (1)
CHEBI:79590 (1)
CHEBI:79531 (1)
CHEBI:79913 (1)
CHEBI:79701 (1)

Metabolite Name

(3beta,4alpha,5alpha)-3-Hydroxy-4-methylcholest-7-ene-4-carboxylic acid (1)
(1S)-1-{(2R,3R,5R)-5-Hydroxy-3-[(3beta,5alpha,13alpha,14beta,17alpha)-3-hydroxy-4,4,14-trimethylandrost-7-en-17-yl]tetrahydro-2-furanyl}-2-methyl-1,2-propanediol (1)
(8alpha,9beta,11beta,14beta,20S,23S,24R)-11,23,24,25-Tetrahydroxydammar-13(17)-en-3-one (1)
1-[(1R,3aS,5aR,5bR,7aR,9S,11aR,11bR,13aR,13bS)-9-Hydroxy-3a-(hydroxymethyl)-5a,5b,8,8,11a-pentamethylicosahydro-1H-cyclopenta[a]chrysen-1-yl]ethanone (1)
Theasapogenol b (1)
(6R)-6-[(1E,3Z,5R,7E,9E,11R,13S,14R,15S)-3-Ethyl-14-hydroxy-5,9,11,13,15-pentamethyl-12-oxo-1,3,7,9-heptadecatetraen-1-yl]-5,6-dihydro-2H-pyran-2-one (1)
E-Tokoferol (1)
Bolandiol dipropionate (1)
(2S)-2-(4-Isobutylphenyl)propanoic acid - L-lysine hydrate (1:1:1) (1)
Yamogenin (1)
(5beta)-14-Hydroxycholest-7-ene-3,6-dione (1)
Metenolone enanthate (1)
10-[(1R,2S)-2-Hexylcyclopropyl]decanoic acid (1)
METHYL OLEATE (1)
(6Z)-17-Methyl-6-octadecenoic acid (1)
Nisobamate (1)
(3beta,5beta,6beta,7alpha,22E,24xi)-5,19-Cycloergost-22-ene-3,6,7-triol (1)
(3beta,6beta,7alpha,22E,24xi)-Ergosta-4,22-diene-3,6,7-triol (1)
(3beta,7beta,22E,24xi)-Ergosta-5,22-diene-3,7,8-triol (1)
(3beta,4alpha,5alpha)-3-Hydroxycholest-7-ene-4-carboxylic acid (1)
(14xi,22R,23R,24S)-22,23-Dihydroxyergost-4-en-3-one (1)
(2S)-2-Aminotridecanoic acid (1)
(3alpha,5beta)-3,17,21-Trihydroxypregnan-20-one (1)
3a,11b,21-Trihydroxy-5b-pregnan-20-one (1)
Drostanolone (1)
(5Z,9alpha,11alpha,13E,15S)-9,11,15-Trihydroxy-15-methylprosta-5,13-dien-1-oic acid (1)
(4aS,8S,8aS)-8-[(3S)-3-Hydroxy-3-methyl-4-penten-1-yl]-4,4,8a-trimethyl-7-methyleneoctahydro-2(1H)-naphthalenone (1)
Acutilol A (1)
(3alpha)-3,20,21-Trihydroxypregnan-11-one (1)
(3alpha,8xi,9xi,10xi,13xi,14xi)-Pregnane-3,11,17,20,21-pentol (1)

First Public Date

2025 (18)
2024 (16)
2026 (15)
2023 (14)
2020 (9)
2017 (6)
2022 (5)
2018 (4)
2014 (4)
2019 (3)
2021 (2)
2016 (2)
2015 (1)

Classification

bacteria (2)
protozoa (1)

Study type

Transcription profiling by array (11)
ChIP-seq (8)
RNA-seq of coding RNA (4)
Transcription profiling by tiling array (2)
ChIP-chip by array (2)
Cell line - High-throughput sequencing (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2021 (325)
2022 (280)
2023 (246)
2020 (233)
2025 (218)
2024 (204)
2019 (126)
2018 (87)
2014 (70)
2016 (68)
2017 (64)
2015 (57)
2012 (49)
2010 (47)
2013 (45)
2011 (42)
2009 (34)
2008 (31)
2026 (28)
2007 (22)
2005 (12)
2006 (11)
2004 (11)
2003 (11)
2002 (8)
2001 (7)
2000 (4)
1999 (3)
1998 (3)

Lab affiliation

Institute of Basic Medical Sciences, School of Basic Medicine, Peking Union Medical College; No. 5 Dongdansantiao, Dongcheng District, Beijing 100005, China (2)
Sencond Military Medical University (2)
1 Ecole Pratique des Hautes Etudes, EPHE, Université Paris Sciences et Lettres, Paris, France, 2 Nantes Université, CNRS, INSERM, l'Institut du Thorax, F-44000 Nantes, France, 3 Laboratoire d’Excellence GR-Ex, Paris, France, 75010 (1)
Academy for Advanced Interdisciplinary Studies, Center for Quantitative Biology (CQB), Peking University, China (1)
Additional Professor and Head Department of Biotechnology, Ail India institute of Medical Sciences New Delhi -110029 (1)
Albert-Ludwigs-Universität Freiburg, Institut für Biologie III, Schänzlestr. 1, 79104 Freiburg, Germany (1)
Australian Institute for Microbiology and Infection, University of Technology Sydney, Australia (1)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (1)
Biochemie der Pflanze, Justus-von-Liebig-Weg 11, 37077 Göttingen (1)
Biologie des interactions hôte-parasite Institut Pasteur (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Centre for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, The Netherlands (1)
Boston Children's Hospital (1)
Boston College (1)
CABIMER (1)
CECAD and Institute for Genetics Joseph-Stelzmann Straße 26 University of Cologne, Cologne, Germany (1)
Cambridge Institute for Medical Research, University of Cambridge; Cambridge, UK (1)
Cell Biology, Faculty of Science, Utrecht University, TheNetherlands (1)
Center for Genomic Medicine, National Cheng Kung University, Tainan 70101, Taiwan; Institute of Molecular Medicine, National Cheng Kung University, Tainan 70101, Taiwan. (1)
Center for Proteomics and Metabolomics Leiden University Medical Center Tel +31-71-5266394 P.J.Hensbergen@lumc.nl https://www.lumc.nl/org/proteomics-metabolomics/ https://cpm.lumc.nl (1)
Center for Proteomics and Metabolomics, Leiden University Medical Center, Leiden, The Netherlands (1)
Chair of Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany (1)
Chair of Proteomics and Bioanalytics, Technische Universität München, Germany (1)
Charles University in Prague, Faculty of Science Department of Parasitology Biocev, Průmyslová 595, Vestec 252 42 (1)
Chemistry, Duke University, USA (1)
Chronic Disease Programme (UFIEC), Instituto de Salud Carlos III, Majadahonda, E-28220 Madrid, Spain. (1)
Departamento de Bioquímica e Biologia Molecular, UFPR Curitiba, PR, Brazil (1)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany (1)
Department of Biochemistry and Molecular Biology University of Southern Denmark (1)
Department of Biological Sciences, National University of Singapore, 14 Science Drive 4, Singapore, 117543 (1)
Department of Biology of the Cell Nucleus, Institute of Molecular Genetics of the Czech Academy of Sciences, Vídeňská 1083, 142 20 Prague, Czech Republic (1)

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HaCaT ACSL4mRNA probe pull-down MS

ACSL4mRNA probe was designed for pull-down experiments in HaCaT lysates

ORGANISM(S): Homo sapiens (Human)

2025-10-13 | PXD052755 | Pride

Hacat acsl4mrna pull-down ms

TcRBP40 pull-down ribonomics

RNA pull-down assay.
For the recombinant protein pull-down assays, 50 M-5g of recombinant His-tag TcRBP40 protein were bound to 100 uL of Ni-NTA resin (Qiagen) overnight at 4M-0C. 100 M-5g of total RNA from epimastigotes were incubated with the bound protein in 500 M-5l EMSA buffer at 4M-0C for 2...

ORGANISM(S): Trypanosoma cruzi

2012-06-30 | E-MEXP-3057 | biostudies-arrayexpress

Pull-down of nuclear proteins from HGC-27 cell line

To identify nuclear proteins that interact with KIT2KIT* G-quadruplex DNA, pull-down assays were performed with nuclear extracts from the KIT-positive HGC-27 cell line. Streptavidin-coated paramagnetic beads were derivatized with the biotinylated oligonucleotide and subsequently incubated with nucle...

ORGANISM(S): Homo sapiens (Human) Streptomyces avidinii

2022-04-04 | PXD026505 | Pride

Lc-mse Nuclear extracts In-gel tryptic digests Hgc-27 cells Pull-down assays Protein identification

Identification of mouse lncRNA ENSMUST00000219456(GM32255) interacting proteins in HL-1 cardiomyocytes by pull-down assays coupled to MS

In this study, pull down assays combined with mass spectrometry analysis were performed in HL-1 cardiomyocytes transfected with control plasmid (OE-Vector) or LOC107984012-overexpression plasmid to identify the repertoire of LOC107984012 interacting proteins.

ORGANISM(S): Mus musculus (Mouse)

2024-01-26 | PXD036966 | Pride

Mouse lncrna ensmust00000219456(gm32255)

circMAN1A2_009-pulled down proteins in HeLa cells

CircRNA pulldown assays were conducted to identify proteins interacting with circMAN1A2_009. In summary, HeLa cell protein extracts were incubated with biotin-labeled circMAN1A2_009 probes obtained from Tsingke Biotechnology, China, at room temperature for 1h. Subsequently, streptavidin magnetic bea...

ORGANISM(S): Homo sapiens (Human)

2025-05-07 | PXD052372 | Pride

Circman1a2_009 Hela Pull-down assays

Optimization of Biotinylated RNA or DNA Pull-Down Assays for Detection of Binding Proteins: Examples of IRP1, IRP2, HuR, AUF1, and Nrf2.

Not available

S-EPMC9965622 | biostudies-literature

Proteomic and Genomic Analysis of transcription factor TFII-I reveals insight into the response to cellular stress

We expressed biotin-tagged transcription factor TFII-I (GTF2I) in K562 cells and subjected crosslinked chromatin to streptavidin mediated pull down. We subjected the isolated DNA to Illumina sequencing. We identified 18920 TFII-I binding peaks. Nearest gene analysis revealed 5886 genes associated w...

ORGANISM(S): Homo sapiens

2014-05-14 | E-GEOD-51065 | biostudies-arrayexpress

FILIP1 CT pull-down

FILIP1 was identified as potential new filamin C interaction partner by a SILAC-based BioID experiment. Interaction of the two protein via the carboxy-terminal end of FILIP and domain 18-21 of filamin C was prooven by yeast-2-hybrid sreens and dot-blot assays, respectively. To verify this interactio...

ORGANISM(S): Mus musculus (Mouse)

2022-06-06 | PXD008875 | Pride

C2c12 myotubes Filip1 Filamin c

DNA pulldown of PRDM16 promoter and measurement of LC/MS-MS

To further investigate the transcription cofactor of Smad3 that regulated the transcription of PRDM16, we conducted DNA pull-down assay. we treated HK-2 cells with TGF-β and extracted the nuclear proteins. And the nuclear proteins were incubated with streptavidin magnetic beads, and biotin-labeled D...

ORGANISM(S): Homo sapiens (Human)

2025-07-14 | PXD044753 | Pride

Hk-2 cell line dna pull-down lc/ms-ms

Identification of human gene LOC107984012 interacting proteins in AC16 cardiomyocytes by pull-down assays coupled to MS

In this study, pull down assays combined with mass spectrometry analysis were performed in AC16 cardiomyocytes transfected with control plasmid (OE-Vector) or LOC107984012-overexpression plasmid to identify the repertoire of LOC107984012 interacting proteins. Pierce™ Magnetic RNA-Protein Pull-Down K...

ORGANISM(S): Homo sapiens (Human)

2024-01-26 | PXD037001 | Pride

Human gene loc107984012

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