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ProteomicsComprehensive Proteomic Analysis of Nitrogen Starved Mycobacterium smegmatis Δpup Reveals the Impact of Pupylation on Nitrogen Stress Response
Mycobacterium smegmatis is a soil bacterium exposed to continuously environmental changes of nitrogen availability. As member of Actinobacteria, it possesses an ubiquitin-like post-translational modification pathway called pupylation. The pathway starts when a small protein called Pup is attached to...
ORGANISM(S): Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) 
2016-08-11 | PXD003229 | Pride
Pupylation Nitrogen starvation Quantitative proteomics Mycobacterium smegmatis 
UnknownPositive-Unlabeled Learning for Pupylation Sites Prediction.
Not available
S-EPMC4992543 | biostudies-literature
UnknownProteome-wide identification of mycobacterial pupylation targets.
Not available
S-EPMC2925521 | biostudies-literature
UnknownThe Mechanism of Mycobacterium smegmatis PafA Self-Pupylation.
Not available
S-EPMC4783102 | biostudies-literature
UnknownThe pupylation pathway and its role in mycobacteria.
Not available
S-EPMC3511204 | biostudies-literature
UnknownSystematic analysis and prediction of pupylation sites in prokaryotic proteins.
Not available
S-EPMC3760804 | biostudies-literature
ProteomicsPupylation sites on protein GFP-PupE
Characterization of GFP-Pup after Pupylation assays by mass spectrometry.
ORGANISM(S): Mycobacterium Tuberculosis H37rv_2009 
2021-06-04 | PXD026478 |
UnknownIdentifying Pupylation Proteins and Sites by Incorporating Multiple Methods.
Not available
S-EPMC9088680 | biostudies-literature
ProteomicsPupylation sites on protein Sox2
As a test for the effectiveness of SPIDER with RNA-protein pairs, We used Sox2 and specific biotin-DNA and biotin-RNA to validate the efficiency of SPIDER capturing protein-nucleic acid interaction. Pupylation sites on Sox2 after SPIDER assay was identified by LC-MS/MS analysis, by searching for an ...
ORGANISM(S): Homo Sapiens 
2021-06-04 | PXD026517 |
UnknownReconstitution of the Mycobacterium tuberculosis pupylation pathway in Escherichia coli.
Not available
S-EPMC3147258 | biostudies-literature
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