Quantitative phosphoproteomics

Show results for

Proteomics (796)
Unknown (406)
Genomics (32)
Transcriptomics (22)
Other (11)
Metabolomics (3)
Models (1)

Organisms

Homo sapiens (79)
Mus musculus (32)
Arabidopsis thaliana (6)
cellular organisms (4)
Rattus norvegicus (3)
Saccharomyces cerevisiae (2)
Sus scrofa (2)
BTO_0000214 (2)
Candida albicans (1)
Macrobrachium nipponense (1)
Ciona savignyi (1)
Populus tomentosa (1)
Pelophylax nigromaculatus (1)
Mycolicibacterium smegmatis MC2 155 (1)
Lycium barbarum (1)
Neospora caninum (1)
Bos taurus (1)
Drosophila melanogaster (1)
Triticum aestivum (1)
Danio rerio (1)
Lasiopodomys brandtii (1)
Spirometra erinaceieuropaei (1)
Mus (1)
Ovis aries (1)
Catharanthus roseus (1)
Escherichia coli (1)
Caenorhabditis elegans (1)
Rattus rattus (1)
CLO:0003684 (1)
Patiria miniata (1)

Organisms

Homo sapiens (19)
Mus musculus (5)
Candida albicans (1)

Repository

pride (626)
jPOST (47)
MassIVE (45)
iProX (38)
PeptideAtlas (28)
ENA (27)
geo (23)
GPMDB (9)
PanoramaPublic (7)
biostudies-arrayexpress (6)
PAXDB (5)
MetaboLights (3)
BioModels (1)

Tissue

Cell culture (176)
Epithelial cell (64)
Brain (38)
Permanent cell line cell (34)
Others (25)
Lung (22)
Plant cell (20)
B cell (19)
T cell (19)
Whole body (17)
Liver (17)
Blood (17)
Cell suspension culture (16)
Heart (15)
Kidney (14)
Fibroblast (12)
Primary cell (11)
Hepatocyte (11)
Root (10)
Bone marrow (9)
Spleen (9)
Embryonic stem cell (8)
Stem cell (8)
Leaf (8)
Myotube (6)
Skin (6)
HeLa cell (6)
Female Reproductive System (1)
Ovary (1)
Plasma Non-glyco (1)

Disease

Acute leukemia (24)
Breast cancer (23)
Disease free (16)
Lung cancer (14)
Malignant neoplasm of ovary (10)
Not Available (9)
Alzheimer's disease (7)
Type 2 diabetes mellitus (7)
Colon cancer (7)
Pancreatic ductal adenocarcinoma (6)
Non-small cell lung carcinoma (5)
Cardiovascular system disease (5)
Prostate adenocarcinoma (4)
Lymphoma (4)
Neuroblastoma (4)
Cervix carcinoma (4)
Brain cancer (4)
Lung adenocarcinoma (3)
Glioblastoma (3)
Wounds and Injuries (3)
RNAi_reagent (2)
Hypertrophic cardiomyopathy (2)
Hepatocellular carcinoma (2)
Huntington Disease (2)
Mixed disorder as reaction to stress (2)
Multiple myeloma (2)
Human immunodeficiency virus infectious disease (2)
Melanoma (2)
Colorectal cancer (2)
High Grade Ovarian Serous Adenocarcinoma (1)

Technology Type

Mass Spectrometry (626)
Shotgun proteomics (428)
Bottom-up proteomics (110)
Data-dependent acquisition (67)
Affinity purification coupled with mass spectrometry proteomics (43)
SWATH MS (21)
Data-independent acquisition (21)
Top-down proteomics (12)
SRM/MRM (11)
Gel-based experiment (9)
DiaPASEF (5)
All-ion fragmentation (4)
Mass spectrometry (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Mass spectrometry assay (1)
ITRAQ reagent (1)
Gel-free quantification method (1)
Affinity proteomics (1)
MSE (1)

Instrument Platform

LTQ Orbitrap Velos (22)
Instrument (9)
Q Exactive (9)
Orbitrap Fusion Lumos (8)
LTQ Orbitrap Elite (8)
Orbitrap Fusion (7)
Q Exactive HF (7)
Orbitrap Exploris 480 (5)
LTQ Orbitrap (4)
Q Exactive Plus (3)
Orbitrap Astral (2)
LTQ Orbitrap XL (2)
Orbitrap Eclipse (2)
Liquid Chromatography MS - positive - hilic (2)
Affymetrix GeneChip Scanner 3000 7G (1)
NextSeq 500 (1)
Thermo Scientific Orbitrap Velos 2 (1)
QSTAR Elite (1)
TimsTOF HT (1)
MS:1000031 (1)
LTQ (1)
LTQ Velos (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - hilic (1)
LTQ-Orbitrap (1)

Publication Date

2022 (89)
2023 (85)
2021 (78)
2024 (74)
2026 (72)
2020 (72)
2025 (69)
2018 (64)
2019 (49)
2017 (48)
2016 (29)
2013 (28)
2015 (27)
2014 (23)
2012 (2)
2010 (1)

UNIPROT ID/AC

CSEC_STRCO (3)
Q9RD03_STRCO (3)
Q9S2B3_STRCO (3)
Q9EX14_STRCO (3)
O86590_STRCO (3)
Q93JE5_STRCO (3)
O86748_STRCO (3)
Q9S280_STRCO (3)
Q9K3Q8_STRCO (3)
O69961_STRCO (3)
Q9FBZ3_STRCO (3)
Q9RK21_STRCO (3)
Q93IZ2_STRCO (3)
O86689_STRCO (3)
Q9L1D1_STRCO (3)
Q9RDK2_STRCO (3)
Q9KYR1_STRCO (3)
Q9KZ31_STRCO (3)
Q9S2V9_STRCO (3)
Q9RKF7_STRCO (3)
Q9FCE6_STRCO (3)
Q9ADJ5_STRCO (3)
Q93RW6_STRCO (3)
Q9XA23_STRCO (3)
Q9ZBT4_STRCO (3)
Q9K4C2_STRCO (3)
Q9L2J1_STRCO (3)
Q9RKW3_STRCO (3)
Q9KYA5_STRCO (3)
Q9KY72_STRCO (3)

ENSEMBL ID

ENSG00000147251 (11)
ENSG00000170477 (11)
ENSG00000204131 (3)
ENSG00000229353 (2)
ENSG00000247315 (2)

CHEBI ID

CHEBI:16410 (2)
CHEBI:168310 (1)
CHEBI:34484 (1)
CHEBI:178475 (1)
CHEBI:172379 (1)
CHEBI:192674 (1)
CHEBI:192672 (1)
CHEBI:192668 (1)
CHEBI:192663 (1)
CHEBI:164184 (1)
CHEBI:160379 (1)
CHEBI:87153 (1)
CHEBI:192659 (1)
CHEBI:192658 (1)
CHEBI:192655 (1)
CHEBI:192654 (1)
CHEBI:183669 (1)
CHEBI:158305 (1)
CHEBI:183432 (1)
CHEBI:192653 (1)
CHEBI:183731 (1)
CHEBI:84880 (1)
CHEBI:161806 (1)
CHEBI:161576 (1)
CHEBI:192651 (1)
CHEBI:192649 (1)
CHEBI:192647 (1)
CHEBI:192646 (1)
CHEBI:192645 (1)
CHEBI:167535 (1)

Metabolite Name

Pyridoxamine (2)
LPC 8:0 (1)
18-alpha-Glycyrrhetinic acid (1)
Lysopc 16:2 (1)
8(R)-Hydroxy-(5Z,9E,11Z,14Z)-eicosatetraenoic acid (1)
(+/-)-Equol (1)
2,3-Dinor-11alpha-prostaglandin F2alpha (1)
1-(5H-dibenzo[b,f]azepin-5-yl)ethan-1-one (1)
3,3-dimethyl-1-[4-(trifluoromethoxy)phenyl]piperidine-2,6-dione (1)
Ethyl 2-cyano-3-[(2-oxoazepan-3-yl)amino]acrylate (1)
3,4-Methylenedioxy-¦Á-pyrrolidinopropiophenone (1)
5-Aminoimidazole-4-carboxamide-1-beta-d-ribofuranosyl 5-monophosphate (1)
5-[(benzoyloxy)methyl]-4,5,6-trihydroxycyclohex-2-en-1-yl benzoate (1)
Trans-delta-2-11-Methyl-dodecenoic acid (1)
N1-[2-oxo-6-(1H-pyrrol-1-yl)-2H-chromen-3-yl]acetamide (1)
6-amino-1-(2-methylphenyl)-1,2,3,4-tetrahydropyrimidine-2,4-dione (1)
6alpha-Naltrexol (1)
8-(2,3-dihydroxy-3-methylbutyl)-7-methoxy-2H-chromen-2-one (1)
N4-[5-(2-pyridyl)-2-thienyl]morpholine-4-carboxamide (1)
17alpha-Methyl-androstan-3-hydroxyimine-17alpha-ol (1)
N-[5-(tert-butyl)-3-isoxazolyl]-N'-[2-(trifluoromethoxy)phenyl]urea (1)
DAG (16:0/18:1) (1)
2,2-dimethyl-6,7-di[(4-nitrobenzyl)oxy]chroman-4-one (1)
GDP-D-mannose (1)
3-(3-furylmethylidene)-1,5-dioxaspiro[5.5]undecane-2,4-dione (1)
15-epi Cloprostenol (1)
2-(2,6-dihydroxyphenyl)-3,5,7-trihydroxy-4H-chromen-4-one (1)
1-(4-hydroxyphenyl)-2-phenylethan-1-one (1)
4-[(4-phenethyl-1,4-diazepan-1-yl)sulfonyl]-2,1,3-benzoxadiazole (1)
Luteolin-3',7-Diglucoside (1)

First Public Date

2021 (5)
2026 (4)
2024 (3)
2020 (3)
2019 (3)
2025 (2)
2018 (2)
2023 (1)
2022 (1)
2017 (1)
2016 (1)
2015 (1)

Lab affiliation

MDC (5)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany (5)
Lineberger Comprehensive Cancer Center at UNC Chapel Hill (4)
Moffitt Cancer Center Tampa, FL, USA (4)
College of Agriculture, Nanjing Agricultural University, Nanjing, China (3)
DIMEVET Università degli Studi di Milano (3)
Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA (3)
Department of Pediatrics, University of Groningen, University Medical Center Groningen (UMCG), 9713 AV Groningen, The Netherlands (3)
Novo Nordisk Foundation Center for Protein Research, University of Copenhagen (3)
Evotec, Martinsried, Germany (3)
Ottawa Institute of Systems Biology and Department of Biochemistry, Microbiology and Immunology, Faculty of Medicine, University of Ottawa, 451 Smyth Road, Ottawa, Ontario K1H 8M5, Canada (3)
Yale University School of Medicine (3)
UCSF (3)
Moffitt Cancer Center Tampa, FL (2)
Functional Proteomics Laboratory, Regional Centre for Biotechnology, NCR Biotech Science Cluster, Faridabad, India (2)
Inserm U1016, Institut Cochin, 24 rue du Faubourg Saint-Jacques, 75014 PARIS, FRANCE. (2)
Institute of Bioinformatics , International Technology Park, Bangalore, India (2)
Department of Biochemistry, Western University, Canada (2)
Division of Life Science, The Hong Kong University of Science and Technology, Hong Kong SAR, China (2)
Director, Centre for Proteome Research Department of Biochemistry & Systems Biology Institute of Systems, Molecular & Integrative Biology University of Liverpool Crown Street, Liverpool L69 7ZB +44 151 795 4424 (2)
Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Harbin 150040, China (2)
Max Delbruck Center for Molecular Medicine, Robert-Rössle-Str. 10, D-13092 Berlin, Germany (2)
Nutrient Metabolism & Signalling Laboratory, Metabolism, Diabetes and Obesity Program, Biomedicine Discovery Institute, Monash University, Victoria 3800, Australia (2)
Epithelial Systems Biology Laboratory, Systems Biology Center, NHLBI, NIH (2)
Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY (2)
Purdue University (2)
Agricultural Biotechnology Research Center, Academia Sinica, Taiwan (2)
the First Affiliated Hospital of Chongqing Medical University (2)
Debora Bonenfant, Novartis Institutes for BioMedical Research, Basel, Switzerland (2)
lab (2)

IsPrivate

False (1)

Classification

fungi (1)

Modification

2x(15)N labeled L-lysine (12)
4x(15)N labeled L-arginine (12)
4 (4)
4x(2)H labeled dimethylated L-lysine (2)
79.966331 (1)
15.994915 (1)
57.021464 (1)
Not available (1)

Study type

Transcription profiling by array (3)
RNA-seq of coding RNA (2)
Animal - High-throughput sequencing (1)

Release Date

2021 (44)
2022 (37)
2023 (36)
2015 (34)
2020 (32)
2018 (31)
2024 (27)
2017 (27)
2016 (25)
2014 (25)
2025 (24)
2019 (23)
2013 (16)
2011 (10)
2012 (7)
2010 (7)
2009 (2)
2007 (2)
2026 (1)
2008 (1)
2006 (1)

Previous page
1 / 128
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 128
Next page

Sort by:

Relevance

Page size

Multi-omics and biophysical phosphoproteomics uncover functional phosphorylation networks of BRAFV600E-driven signaling

Dysregulated kinase activity drives oncogenic signalling, perturbs cellular homeostasis, and promotes tumour progression. Despite major success in targeting kinases therapeutically, the downstream consequences of kinase inhibition and the mechanisms underlying drug resistance remain incompletely ...

2025-12-09 | MTBLS7390 | MetaboLights

4D Label-Free Quantitative Phosphoproteomics of 12 Cell Samples (3 Groups with 4 Replicates Each)

ORGANISM(S): Homo sapiens (Human)

2026-06-11 | PXD074380 | Pride

Xa04306lpst

Phosphoproteomics sample preparation impacts biological interpretation of signalling responses

Quantitative data-dependent acquisition phosphoproteomics (DDAP) has revolutionised cell signaling studies. However, the impact of the specific DDAP sample preparation method on the phosphoproteome quantified is unclear as each study quantifies only a fraction of the phosphoproteome. Here, we compar...

ORGANISM(S): Mus musculus (Mouse)

2021-12-25 | PXD025376 | Pride

Phosphoproteomics Tio2 Mouse High-throughput phosphoproteomics Scxphos Sample preparation Highphos Comparative analysis

Quantitative phosphoproteomics of CXCL12 (SDF-1) signaling.

Not available

S-EPMC3176801 | biostudies-literature

Quantitative Phosphoproteomics Reveals Targets of Protein Kinase SnRK1 in Arabidopsis under Submergence

SNF1 RELATED PROTEIN KINASE 1 (SnRK1) is proposed as a central integrator of regulatory pathways in plant stress and energy starvation signaling. We observed in this study that the Arabidopsis SnRK1.1 dominant negative mutant (SnRK1.1K48M) had lower tolerance to submergence than the wild-type, sugge...

ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress)

2016-04-07 | PXD001815 | Pride

Energy starvation Submergence Snrk1 Phosphoproteomics

Quantitative phosphoproteomics explain cryopreservation-induced reductions in ram sperm motility

Our objective was to use quantitative phosphoproteomics for systematic comparative analyses of fresh versus frozen-thawed sperm to identify factors causing cryo-injury.

ORGANISM(S): Ovis Aries

2023-12-28 | PXD048166 |

Dissection of the insulin signaling pathway via quantitative phosphoproteomics.

Not available

S-EPMC2268157 | biostudies-literature

Quantitative Phosphoproteomics Analysis of ERBB3/ERBB4 Signaling.

Not available

S-EPMC4706443 | biostudies-literature

Quantitative phosphoproteomics reveals diverse stimuli activate distinct signaling pathways during neutrophil activation.

Not available

S-EPMC9287233 | biostudies-literature

Quantitative phosphoproteomics reveals extensive cellular reprogramming during HIV-1 entry.

Not available

S-EPMC4104530 | biostudies-literature

Previous page
1 / 128
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 128
Next page

Sort by:

Relevance

Page size

1271 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

UNIPROT ID/AC

ENSEMBL ID

CHEBI ID

Metabolite Name

First Public Date

Lab affiliation

Tags

IsPrivate

Classification

Modification

Study type

Release Date

OmicsDI is part of the ELIXIR infrastructure

Tweets