Quantitative phosphoproteomics.

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Mass Spectrometry (626)
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UNIPROT ID/AC

3MGH_STRCO (3)
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ENSEMBL ID

ENSG00000147251 (11)
ENSG00000170477 (11)
ENSG00000204131 (3)
ENSG00000229353 (2)
ENSG00000247315 (2)

CHEBI ID

CHEBI:16410 (2)
CHEBI:178475 (1)
CHEBI:172379 (1)
CHEBI:192674 (1)
CHEBI:192672 (1)
CHEBI:192668 (1)
CHEBI:192663 (1)
CHEBI:164184 (1)
CHEBI:160379 (1)
CHEBI:87153 (1)
CHEBI:192659 (1)
CHEBI:192658 (1)
CHEBI:192655 (1)
CHEBI:192654 (1)
CHEBI:183669 (1)
CHEBI:158305 (1)
CHEBI:183432 (1)
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CHEBI:183731 (1)
CHEBI:84880 (1)
CHEBI:161806 (1)
CHEBI:161576 (1)
CHEBI:192651 (1)
CHEBI:192649 (1)
CHEBI:192647 (1)
CHEBI:192646 (1)
CHEBI:192645 (1)
CHEBI:192644 (1)
CHEBI:166105 (1)
CHEBI:192643 (1)

Metabolite Name

Pyridoxamine (2)
Methionin (1)
LPC 8:0 (1)
18-alpha-Glycyrrhetinic acid (1)
Lysopc 16:2 (1)
8(R)-Hydroxy-(5Z,9E,11Z,14Z)-eicosatetraenoic acid (1)
2,3-Dinor-11alpha-prostaglandin F2alpha (1)
1-(5H-dibenzo[b,f]azepin-5-yl)ethan-1-one (1)
3,3-dimethyl-1-[4-(trifluoromethoxy)phenyl]piperidine-2,6-dione (1)
Ethyl 2-cyano-3-[(2-oxoazepan-3-yl)amino]acrylate (1)
3,4-Methylenedioxy-¦Á-pyrrolidinopropiophenone (1)
PC (8:0/8:0) (1)
5-Aminoimidazole-4-carboxamide-1-beta-d-ribofuranosyl 5-monophosphate (1)
5-[(benzoyloxy)methyl]-4,5,6-trihydroxycyclohex-2-en-1-yl benzoate (1)
Trans-delta-2-11-Methyl-dodecenoic acid (1)
N1-[2-oxo-6-(1H-pyrrol-1-yl)-2H-chromen-3-yl]acetamide (1)
6-amino-1-(2-methylphenyl)-1,2,3,4-tetrahydropyrimidine-2,4-dione (1)
6alpha-Naltrexol (1)
8-(2,3-dihydroxy-3-methylbutyl)-7-methoxy-2H-chromen-2-one (1)
5-[(E)-2-(3,5-dihydroxyphenyl)ethenyl]-2-methoxybenzene-1,3-diol (1)
N4-[5-(2-pyridyl)-2-thienyl]morpholine-4-carboxamide (1)
17alpha-Methyl-androstan-3-hydroxyimine-17alpha-ol (1)
N-[5-(tert-butyl)-3-isoxazolyl]-N'-[2-(trifluoromethoxy)phenyl]urea (1)
DAG (16:0/18:1) (1)
2,2-dimethyl-6,7-di[(4-nitrobenzyl)oxy]chroman-4-one (1)
GDP-D-mannose (1)
3-(3-furylmethylidene)-1,5-dioxaspiro[5.5]undecane-2,4-dione (1)
15-epi Cloprostenol (1)
2-(2,6-dihydroxyphenyl)-3,5,7-trihydroxy-4H-chromen-4-one (1)
1-(4-hydroxyphenyl)-2-phenylethan-1-one (1)

First Public Date

2021 (5)
2026 (4)
2024 (3)
2020 (3)
2019 (3)
2025 (2)
2018 (2)
2023 (1)
2022 (1)
2017 (1)
2016 (1)
2015 (1)

Lab affiliation

Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany (5)
MDC (5)
Lineberger Comprehensive Cancer Center at UNC Chapel Hill (4)
Moffitt Cancer Center Tampa, FL, USA (4)
College of Agriculture, Nanjing Agricultural University, Nanjing, China (3)
DIMEVET Università degli Studi di Milano (3)
Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA (3)
Department of Pediatrics, University of Groningen, University Medical Center Groningen (UMCG), 9713 AV Groningen, The Netherlands (3)
Evotec, Martinsried, Germany (3)
Novo Nordisk Foundation Center for Protein Research, University of Copenhagen (3)
Ottawa Institute of Systems Biology and Department of Biochemistry, Microbiology and Immunology, Faculty of Medicine, University of Ottawa, 451 Smyth Road, Ottawa, Ontario K1H 8M5, Canada (3)
UCSF (3)
Yale University School of Medicine (3)
Agricultural Biotechnology Research Center, Academia Sinica, Taiwan (2)
Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Harbin 150040, China (2)
BK21 FOUR Community-Based Intelligent Novel Drug Discovery Education Unit, College of Pharmacy and Research Institute of Pharmaceutical Sciences, Kyungpook National University, Daegu 41566, Republic of Korea (2)
Center for Immunity and Immunotherapies, Seattle Children's Research Institute. Department of Pediatrics, University of Washington. Seattle, WA USA (2)
Debora Bonenfant, Novartis Institutes for BioMedical Research, Basel, Switzerland (2)
Department of Biochemistry, College of Medicine, University of Saskatchewan (2)
Department of Biochemistry, Western University, Canada (2)
Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY (2)
Director, Centre for Proteome Research Department of Biochemistry & Systems Biology Institute of Systems, Molecular & Integrative Biology University of Liverpool Crown Street, Liverpool L69 7ZB +44 151 795 4424 (2)
Division of Cell Signalling and Immunology, School of Life Sciences, University of Dundee, Dundee, UK (2)
Division of Life Science, The Hong Kong University of Science and Technology, Hong Kong SAR, China (2)
Epithelial Systems Biology Laboratory, Systems Biology Center, NHLBI, NIH (2)
Functional Proteomics Laboratory, Regional Centre for Biotechnology, NCR Biotech Science Cluster, Faridabad, India (2)
Hangzhou Normal University (2)
Inserm U1016, Institut Cochin, 24 rue du Faubourg Saint-Jacques, 75014 PARIS, FRANCE. (2)
Institute of Bioinformatics , International Technology Park, Bangalore, India (2)
Institute of Molecular Biology (IMB), Mainz, Germany (2)

IsPrivate

False (1)

Classification

fungi (1)

Modification

2x(15)N labeled L-lysine (12)
4x(15)N labeled L-arginine (12)
4 (4)
4x(2)H labeled dimethylated L-lysine (2)
15.994915 (1)
57.021464 (1)
79.966331 (1)
Not available (1)

Study type

Transcription profiling by array (3)
RNA-seq of coding RNA (2)
Animal - High-throughput sequencing (1)

Release Date

2021 (44)
2022 (37)
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2015 (34)
2020 (32)
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2011 (10)
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2009 (2)
2007 (2)
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2008 (1)
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4D Label-Free Quantitative Phosphoproteomics of 12 Cell Samples (3 Groups with 4 Replicates Each)

ORGANISM(S): Homo sapiens (Human)

2026-06-11 | PXD074380 | Pride

Xa04306lpst

Phosphoproteomics sample preparation impacts biological interpretation of signalling responses

Quantitative data-dependent acquisition phosphoproteomics (DDAP) has revolutionised cell signaling studies. However, the impact of the specific DDAP sample preparation method on the phosphoproteome quantified is unclear as each study quantifies only a fraction of the phosphoproteome. Here, we compar...

ORGANISM(S): Mus musculus (Mouse)

2021-12-25 | PXD025376 | Pride

Phosphoproteomics Tio2 Mouse High-throughput phosphoproteomics Scxphos Sample preparation Highphos Comparative analysis

Quantitative phosphoproteomics of CXCL12 (SDF-1) signaling.

Not available

S-EPMC3176801 | biostudies-literature

Quantitative phosphoproteomics explain cryopreservation-induced reductions in ram sperm motility

Our objective was to use quantitative phosphoproteomics for systematic comparative analyses of fresh versus frozen-thawed sperm to identify factors causing cryo-injury.

ORGANISM(S): Ovis Aries

2023-12-28 | PXD048166 |

Quantitative Phosphoproteomics Reveals Targets of Protein Kinase SnRK1 in Arabidopsis under Submergence

SNF1 RELATED PROTEIN KINASE 1 (SnRK1) is proposed as a central integrator of regulatory pathways in plant stress and energy starvation signaling. We observed in this study that the Arabidopsis SnRK1.1 dominant negative mutant (SnRK1.1K48M) had lower tolerance to submergence than the wild-type, sugge...

ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress)

2016-04-07 | PXD001815 | Pride

Energy starvation Submergence Snrk1 Phosphoproteomics

Dissection of the insulin signaling pathway via quantitative phosphoproteomics.

Not available

S-EPMC2268157 | biostudies-literature

Quantitative Phosphoproteomics Analysis of ERBB3/ERBB4 Signaling.

Not available

S-EPMC4706443 | biostudies-literature

Quantitative phosphoproteomics reveals diverse stimuli activate distinct signaling pathways during neutrophil activation.

Not available

S-EPMC9287233 | biostudies-literature