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TranscriptomicsClustered regulatory signals at nucleosome-depleted regions punctuate a constant nucleosomal landscape in Schizosaccharomyces pombe
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Schizosaccharomyces pombe 
2013-11-25 | E-GEOD-41773 | biostudies-arrayexpress
TranscriptomicsClustered regulatory signals at nucleosome-depleted regions punctuate a constant nucleosomal landscape in Schizosaccharomyces pombe
Mononucleosomal DNA analysis of atf1D and pcr1D mutants of Schizosaccharomyces pombe and transcription analysis of exponential wild type 972 h-, atf1D, pcr1D and mitotic diploid pat1.114, and synchronous diploid pat1.114 at 0h, 3h and 5h into meiosis Mononucleosomal DNA vs. genomic input DNA in wild...
ORGANISM(S): Schizosaccharomyces pombe 
2013-11-25 | E-GEOD-41770 | biostudies-arrayexpress
GenomicsClustered regulatory signals at nucleosome-depleted regions punctuate a constant nucleosomal landscape in Schizosaccharomyces pombe
Sequencing of mononucleosomal DNA during asynchronous mitosis and 0, 3 and 5 hours into meiosis in Schizosaccharomyces pombe. Two samples from mononucleosomal DNA from asynchronous mitosis (haploid 972 h- and diploid pat1.114) and three samples from 0, 3 and 5 hours into meiosis (from diploid pat1.1...
ORGANISM(S): Schizosaccharomyces pombe 
2013-11-25 | E-GEOD-41772 | biostudies-arrayexpress
GenomicsA species-specific nucleosomal signature defines a periodic distribution of amino acids in proteins
Sequencing of mononucleosomal DNA during asynchronous mitosis in Schizosaccharomyces pombe, Schizosaccharomyces octosporus, Schizosaccharomyces japonicus and Saccharomyces cerevisiae Samples from mononucleosomal DNA from asynchronous mitosis of four species of budding (Saccharomyces cerevisiae W303-...
ORGANISM(S): Schizosaccharomyces octosporus 
2015-04-10 | E-GEOD-52170 | biostudies-arrayexpress
TranscriptomicsTranscriptional response of Schizosaccharomyces pombe to 5-Fluorouracil (5FU)
We use high-density tiling DNA microarray technology to obtain the specific transcriptome-wide response induced by 5-Fluorouracil (5FU) in the eukaryotic model Schizosaccharomyces pombe. Schizosaccharomyces pombe cultures with 5FU added to a final concentration of 500 M-NM-
ORGANISM(S): Schizosaccharomyces pombe 
2013-11-14 | E-GEOD-46919 | biostudies-arrayexpress
TranscriptomicsAnalysis of DNA strand-specific differential expression with high density tiling microarrays
DNA microarray technology allows the analysis of genome structure and dynamics at genome-wide scale. Expression microarrays (EMA) contain probes for annotated open reading frames (ORF) and are widely used for the analysis of differential gene expression. By contrast, tiling microarrays (TMA) have a ...
ORGANISM(S): Schizosaccharomyces pombe 972h- 
2010-05-14 | E-GEOD-19020 | biostudies-arrayexpress
GenomicsThe conserved role of the RSC chromatin remodeler in the establishment of nucleosome depleted regions
The occupancy of nucleosomes governs access to the eukaryotic genomes and results from a combination of biophysical features and the effect of ATP-dependent remodeling complexes. Most promoter regions show a conserved pattern characterized by a nucleosome-depleted region (NDR) flanked by nucleosomal...
ORGANISM(S): Schizosaccharomyces pombe 
2016-08-24 | E-GEOD-84912 | biostudies-arrayexpress
GenomicsHistone H2B ubiquitylation represses gametogenesis by opposing RSC-Dependent chromatin remodeling at the ste11 master regulator locus
Chromatin modifications play a pivotal role in cell fate decision. In fission yeast, the ste11 gene encodes the master regulator initiating the switch from vegetative growth to gametogenesis when cells starve. The methylation of H3K4 by Set1-COMPASS and consequent promoter nucleosome deacetylation w...
ORGANISM(S): Schizosaccharomyces pombe 
2016-07-22 | E-GEOD-80524 | biostudies-arrayexpress
GenomicsPromoter nucleosome dynamics regulated by signaling through the CTD code
Sequencing of mononucleosomal DNA from asynchronous cells of Schizosaccharomyces pombe WT and S2A mutant Mononucleosomal DNA from asynchronous S. pombe WT (1 sample) and S2A mutant cells (2 samples) were sequenced (Illumina HiSeq 2000) using the single-end read protocol
ORGANISM(S): Schizosaccharomyces pombe 
2015-06-22 | E-GEOD-59768 | biostudies-arrayexpress
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