Ram Z Z - OmicsDI

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Unknown (296)
Proteomics (100)
Metabolomics (10)
Transcriptomics (9)
Genomics (6)

Organisms

Homo sapiens (60)
Mus musculus (26)
Ovis aries (4)
Equus caballus (2)
Oryza sativa (2)
Rattus norvegicus (2)
Saccharomyces cerevisiae (2)
Oryza sativa Indica Group (1)
Mycobacterium tuberculosis (1)
Arabidopsis thaliana (1)
288671 (1)
Argyrosomus regius (1)
Aspergillus aculeatus ATCC 16872 (1)
Aspergillus brasiliensis (1)
Aspergillus carbonarius ITEM 5010 (1)
Aspergillus sydowii (1)
Aspergillus tubingensis (1)
Aspergillus versicolor (1)
Aspergillus wentii (1)
Bombus terrestris terrestris (1)
Brucella abortus str. 2308 A (1)
Burkholderia cenocepacia (1)
Escherichia coli (1)
Klebsiella pneumoniae (1)
Mycobacterium tuberculosis H37Ra (1)
Nicotiana benthamiana (1)
Penicilliopsis zonata (1)
Petunia integrifolia subsp. inflata (1)
Pseudomonas syringae pv. tomato str. DC3000 (1)
Spodoptera exigua (1)

Repository

pride (100)
biostudies-arrayexpress (11)
MetaboLights (10)
EGA (4)

Tissue

Cell culture (25)
Brain (7)
Liver (6)
Sperm (5)
Epithelial cell (4)
Whole body (4)
Blood plasma (3)
Lung (3)
Spermatozoon (3)
B cell (2)
Heart (2)
Hepatocyte (2)
Kidney (2)
Permanent cell line cell (2)
Stem cell (2)
T cell (2)
Testis (2)
Tonsil (2)
Anther (1)
Aorta endothelium (1)
Blood (1)
Blood-brain barrier (1)
Bone marrow (1)
Breast epithelial cell (1)
Breast epithelium (1)
Bronchoalveolar lavage (1)
Cardiac blood vessel endothelial cell (1)
Cardiac muscle myoblast (1)
HeLa cell (1)
JURKAT cell (1)

Disease

Aortic aneurysm (2)
Brain cancer (2)
Breast cancer (2)
Alzheimer's disease (1)
Colon cancer (1)
Disease free (1)
Male infertility (1)
Myelodysplastic syndrome (1)
Myocardial infarction (1)
Ovarian serous carcinoma (1)
Plasmodium falciparum malaria (1)
Prostate cancer (1)
Pulmonary fibrosis (1)
Sarcoma (1)

Technology Type

Mass Spectrometry (100)
Data-independent acquisition (53)
Bottom-up proteomics (49)
Shotgun proteomics (21)
Data-dependent acquisition (14)
Mass spectrometry (8)
Affinity purification coupled with mass spectrometry proteomics (5)
SWATH MS (5)
Mass spectrometry assay (2)
DiaPASEF (2)
Affinity proteomics (1)
Gel-based experiment (1)
HDMSE (1)
Immunopeptidomics (1)
Top-down proteomics (1)

Instrument Platform

Exactive (Thermo Scientific) (3)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
Illumina HiSeq 4000 (1)
LTQ Classic (Thermo Scientific) (1)
LTQ Orbitrap Classic (Thermo Scientific) (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
Liquid Chromatography MS - negative - reverse phase - Exactive (Thermo Scientific) (1)
Liquid Chromatography MS - positive - HILIC - Exactive (Thermo Scientific) (1)

Publication Date

2025 (51)
2026 (19)
2024 (9)
2022 (7)
2023 (6)
2017 (4)
2020 (4)
2019 (4)
2018 (3)
2015 (2)
2014 (2)
2012 (2)
2011 (2)
2009 (2)
2021 (2)
2013 (1)
2010 (1)

CHEBI ID

CHEBI:17368 (3)
CHEBI:23401 (3)
CHEBI:151 (2)
CHEBI:15354 (2)
CHEBI:15655 (2)
CHEBI:15729 (2)
CHEBI:15756 (2)
CHEBI:15927 (2)
CHEBI:16015 (2)
CHEBI:16040 (2)
CHEBI:16220 (2)
CHEBI:16235 (2)
CHEBI:16393 (2)
CHEBI:16414 (2)
CHEBI:16914 (2)
CHEBI:17053 (2)
CHEBI:17203 (2)
CHEBI:17295 (2)
CHEBI:17568 (2)
CHEBI:17964 (2)
CHEBI:18347 (2)
CHEBI:27432 (2)
CHEBI:28850 (2)
CHEBI:30753 (2)
CHEBI:6698 (2)
CHEBI:87766 (2)
CHEBI:10023 (1)
CHEBI:10093 (1)
CHEBI:10136 (1)
CHEBI:10565 (1)

Metabolite Name

Citrulline (2)
Coniferin (2)
DUDP (2)
()-(E)-13-Hydroxy-10-oxo-11-octadecenoic acid (1)
()-1516-Dihydroxyoctadecanoic acid (1)
()-Quebrachidine (1)
(+)-6a-hydroxymaackiain (1)
(-)-11-Hydroxy-91516-trioxooctadecanoic acid (1)
(-)-Ethyl 3-acetoxy-2-methylbutyrate (1)
(-)-Farnesiferol C (1)
(-)-Matairesinol (1)
(-)-Methyl 5-acetoxyhexanoate (1)
(-)-erythro-Anethole glycol 1-glucoside (1)
(-)-erythro-Anethole glycol 2-glucoside (1)
(10betaH11xi)-11-Hydroxy-13-nor-6-eremophilen-8-one (1)
(1R)-Nepetalic acid (1)
(1R2R)-Isocitric acid (1)
(1R3R4R5S6S8x)-1-Acetoxy-8-angeloyloxy-34-epoxy-5-hydroxy-7(14)10-bisaboladien-2-one (1)
(1R3S4S6R)-69-Dihydroxyfenchone 6-O-b-D-glucoside (1)
(1R4R5S)-5-Hydroxyfenchone glucoside (1)
(1R4S6R)-6-Hydroxyfenchone glucoside (1)
(1S3R4R)-810-Dihydroxyfenchone 10-O-b-D-glucoside (1)
(1S4R)-10-Hydroxyfenchone glucoside (1)
(2E,6E)-farnesyl diphosphate (1)
(2E4Z8E)-Colneleic acid (1)
(2R)-1-O-beta-D-Galactopyranosylglycerol (1)
(2R,3S)-2-methylisocitrate (1)
(3a5b)-24-oxo-24-(2-sulfoethyl)aminocholan-3-yl-b-D-Glucopyranosiduronic acid (1)
(3alpha5alpha9xi10beta)-O-(3-Hydroxy-7-drimen-11-yl)umbelliferone (1)
(3b4b5b)-45-Epoxy-p-menth-1-en-3-ol 3-glucoside (1)

Modification

2x(15)N labeled L-lysine (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
4x(15)N labeled L-arginine (1)
4x(2)H labeled dimethylated residue (1)

Study type

Transcription profiling by array (6)
ChIP-seq (2)
Methylation profiling by array (1)
CUT&RUN (1)
RNA-seq of coding RNA (1)

Release Date

2023 (44)
2022 (34)
2025 (33)
2021 (31)
2024 (26)
2019 (21)
2018 (21)
2017 (21)
2020 (18)
2016 (13)
2015 (8)
2014 (8)
2009 (6)
2026 (5)
2012 (4)
2010 (4)
2011 (3)
2013 (2)
2008 (1)
2007 (1)
2006 (1)
2004 (1)
2003 (1)

Lab affiliation

UCSD (15)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (4)
Tokyo Metropolitan Institute of Medical Science (4)
1) Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA 2) Proteomics Core Facility, Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA 3) Metabolomics Core Facility, Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA (2)
Center for Proteomics & Metabolomics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (2)
Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, Nijmegen, The Netherlands (2)
Dept. of Biological Chemistry,The Alexander Silberman Institute of Life Science, The Hebrew University of Jerusalem,Givat Ram Campus, Jerusalem, 91904, Israel (2)
OncoProteomics Laboratory, Dept of Medical Oncology, Amsterdam University Medical Centers, Amsterdam, The Netherlands (2)
The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA (2)
1) Vascular Biology Program, Boston Children's Hospital, Boston, MA, United States 2) Department of Surgery, Boston Children's Hospital and Harvard Medical School, Boston, MA, United States (1)
Anhui agricultural university college of animal science and technology (1)
Associate Professor, Vice president of the ISBMB society Dept. of Biological Chemistry, room 1-637 The Alexander Silberman Institute of Life Science The Hebrew University of Jerusalem Givat Ram Campus, Jerusalem, 91904, Israel (1)
Associate Professor, Vice president of the ISBMB society The Center for Nanoscience and Nanotechnology The Alexander Silberman Institute of Life Science Dept. of Biological Chemistry, room 1-637 The Hebrew University of Jerusalem Givat Ram Campus, Jerusalem, 9190401, Israel (1)
Center for Functional Protein Assemblies, Department of Bioscience, TUM School of Natural Sciences, Technical University of Munich, Ernst-Otto-Fischer-Straße 8, 85748 Garching, Germany (1)
Center for Infectious Diseases / Parasitology Medical Fakulty Heidelberg University (1)
Centro de Biología Molecular (CBM) (1)
Circadian Clock Project, TOkyo Metropolitan Institute of Health Science (1)
Circadian Clock Project, Tokyo Metropolitan Institute of Medical Science (1)
College of Animal Science and Technology, Anhui Agricultural University, P. R. China. (1)
Colorado Center for Reproductive Medicine (1)
Department of Biochemistry and Functional Genomic, Université de Sherbrooke, QC, Canada (1)
Department of Biochemistry and Molecular Biology, Faculty of Medicine, University of British Columbia (1)
Department of Biomolecular Medicine, Ghent University, Ghent, Belgium VIB Center for Medical Biotechnology, VIB, Ghent, Belgium (1)
Department of Cell Biology, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Poland (1)
Department of Chemistry, University of Washington, Seattle, WA, USA (1)
Department of Chemistry, University of Wisconsin-Madison (1)
Department of Gynecologic Oncology and Reproductive Medicine, The University of Texas MD Anderson Cancer Center, Houston, Texas (1)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne 3000, Australia (1)
Department of Molecular Physiology, Leiden University & Oncode Institute, The Netherlands (1)
Department of Plant and Environmental Sciences, Section for Plant Biochemistry, Dynamic Metabolons Group (1)

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Cryopreservation and egg yolk medium alter the proteome of ram spermatozoa

Cryopreservation causes significant lethal and sub-lethal damage to spermatozoa. In order to improve freezing outcomes, a comprehensive understanding of sub-lethal damage is required. Cryopreservation induced changes to sperm proteins have been investigated in several species, but few have employed ...

ORGANISM(S): Ovis aries

2018-04-26 | PXD009331 | Pride

Mitochonic Acid 5 Increases Ram Sperm Quality by Improving Mitochondrial Function during Storage at 4 °C.

Not available

S-EPMC10854625 | biostudies-literature

Proteomic characterization and comparison of spermatozoa proteomes between ram (Ovis. aries) and buck (Capra. hircus) using a data-independent acquisition-mass spectrometry (DIA-MS)

Artificial insemination in small ruminants is most commonly performed using fresh semen due to the low fertility rates typically achieved with frozen spermatozoa. Usually, when developing and applying assisted reproductive technologies, sheep and goats are often lumped together as one specie. In ord...

ORGANISM(S): Ovis aries Capra hircus (Goat)

2020-05-26 | PXD014095 | Pride

Proteomics Spermatozoa protein Buck Data-independent acquisition Ram

Modeling BMI z score lability during childhood as a function of child temperament and genetic risk for obesity.

Not available

S-EPMC10846492 | biostudies-literature

(Z)-2,3-Di-chloro-1,4-bis-(4-chloro-phen-yl)but-2-ene-1,4-dione.

Not available

S-EPMC4158494 | biostudies-literature

Pyrroloquinoline Quinone Improves Ram Sperm Quality through Its Antioxidative Ability during Storage at 4 °C.

Not available

S-EPMC10812569 | biostudies-literature