Ram - OmicsDI

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Unknown (3119)
Genomics (164)
Transcriptomics (156)
Proteomics (139)
Metabolomics (17)
Models (14)
Other (3)
Clinical (1)
Methylation profiling (1)

Organisms

Homo sapiens (54)
Mus musculus (44)
Arabidopsis thaliana (20)
Ovis aries (13)
Aspergillus niger (7)
Saccharomyces cerevisiae (6)
Danio rerio (5)
Streptomyces coelicolor (5)
Daphnia magna (4)
Drosophila melanogaster (4)
Mammalia (3)
Lactococcus lactis (3)
Schizosaccharomyces pombe (3)
Medicago truncatula (3)
Oryza sativa (3)
Lolium perenne (2)
Lemna minor (1)
Ipomoea batatas (1)
Capsicum annuum (1)
Bombus terrestris (1)
Drosophila pseudoobscura (1)
Mus musculus domesticus (1)
Oryza sativa Indica Group (1)
Zea mays (1)
Bacillus subtilis (1)
Mycobacterium tuberculosis (1)
Glycine max (1)
Escherichia coli K-12 (1)
Pseudomonas aeruginosa (1)
Rattus norvegicus (1)

Organisms

Mus musculus (21)
Arabidopsis thaliana (14)
Homo sapiens (14)
Ovis aries (9)
Streptomyces coelicolor (2)
Salmonella enterica subsp. enterica serovar Infantis (2)
Streptomyces tendae (2)
Escherichia coli (2)
Acinetobacter baumannii (2)
Rickettsia amblyommatis str. GAT-30V (1)
Pachycereus pringlei (1)
Brucella suis 019 (1)
Bacillus sp. WTP1 (1)
semen metagenome (1)
Dunaliella sp. LT (1)
Lathyrus oleraceus (1)
Medicago truncatula (1)
Enterobacter hormaechei (1)
hot springs metagenome (1)
Candida albicans (1)
Oryza sativa (1)
Bacillus subtilis (1)
feces metagenome (1)
root metagenome (1)

Repository

ENA (144)
biostudies-arrayexpress (139)
pride (121)
geo (36)
MetaboLights (16)
BioModels (13)
MassIVE (9)
EGA (6)
iProX (4)
ExpressionAtlas (1)
GNPS (1)
GPMDB (1)
jPOST (1)
PanoramaPublic (1)
PMR (1)

Tissue

Cell culture (28)
Liver (8)
Brain (7)
Epithelial cell (4)
Sperm (4)
Whole body (4)
Blood plasma (3)
Lung (3)
Testis (3)
Anther (2)
B cell (2)
Heart (2)
Hepatocyte (2)
Kidney (2)
Oviduct (2)
Seminal plasma (2)
Spermatozoon (2)
T cell (2)
Tonsil (2)
Abdominal adipose tissue (1)
Adipose tissue (1)
Aorta endothelium (1)
Bacterial protein (1)
Blood (1)
Blood-brain barrier (1)
Bone marrow (1)
Breast epithelial cell (1)
Breast epithelium (1)
HeLa cell (1)
JURKAT cell (1)

Disease

Breast cancer (3)
Aortic aneurysm (2)
Brain cancer (2)
Cancer (1)
Lupus (1)
Metastatic colorectal cancer (1)
Not Available (1)
Disease free (1)
Male infertility (1)
Myelodysplastic syndrome (1)
Myocardial infarction (1)
Ovarian serous carcinoma (1)
Prostate cancer (1)
Pulmonary fibrosis (1)
Sarcoma (1)

Technology Type

Mass Spectrometry (121)
Bottom-up proteomics (51)
Data-independent acquisition (51)
Shotgun proteomics (32)
Mass spectrometry (11)
Data-dependent acquisition (11)
Affinity purification coupled with mass spectrometry proteomics (9)
Mass spectrometry assay (5)
SWATH MS (5)
Gel-based experiment (4)
Top-down proteomics (3)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
DiaPASEF (2)
HDMSE (2)
Affinity proteomics (1)
Immunopeptidomics (1)

Instrument Platform

Illumina NovaSeq 6000 (8)
Dell PowerEdge R750; CPU: 2 × Intel Xeon Gold 6346 (32 Cores / 64 Threads); RAM: 188 GB (7)
NucleoSpin RNA/Protein kit lysis buffer (350 µL per tube; Macherey‑Nagel). (6)
See manuscript (5)
FastPrep‑24 homogenizer (MP Biomedicals) (4)
Illumina Genome Analyzer II (3)
Orbitrap Fusion Lumos (3)
FastPrep‑24 homogenizer (MP Biomedicals), operated at 5 m/s for 10 seconds. (2)
Intel Xeon E5-2660 (128G RAM) (2)
Ion Torrent Proton (2)
Illumina HiSeq 4000 (2)
MaXis (2)
Q Exactive (2)
QSonica Q800R (1)
12 core; 36Gb RAM (1)
Illumina NovaSeq 6000 sequencing platform (Illumina) (1)
RapidPURE RNA Plant Kit (MP Biomedicals, Illkirch, France) (1)
FastPrep-24 homogeniser (1)
MacBook Pro 64Gb RAM; 16-core (1)
Qubit 2.0 Fluorometer; Agilent TapeStation 4200 (1)
Not applicable (1)
NA (1)
NextSeq 2000 (1)
MinION (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
NextSeq 500 (1)
LTQ FT (1)
Instrument (1)
LTQ Orbitrap Elite (1)

Publication Date

2025 (59)
2026 (29)
2024 (28)
2014 (26)
2012 (23)
2011 (20)
2022 (14)
2013 (14)
2023 (14)
2020 (13)
2015 (13)
2021 (12)
2019 (11)
2016 (11)
2017 (9)
2008 (9)
2018 (9)
2010 (8)
2009 (5)
2004 (5)
2007 (4)
2005 (3)

UNIPROT ID/AC

O94916 (2)
Q99653 (1)
P16298 (1)
P05230 (1)
P11362 (1)
P15056 (1)
P04049 (1)
P28482 (1)

CHEBI ID

CHEBI:17368 (4)
CHEBI:23401 (3)
CHEBI:16040 (3)
CHEBI:22652 (3)
CHEBI:28300 (3)
CHEBI:16742 (3)
CHEBI:15746 (3)
CHEBI:28790 (3)
CHEBI:17296 (3)
CHEBI:16235 (3)
CHEBI:17568 (3)
CHEBI:18347 (3)
CHEBI:18211 (3)
CHEBI:16359 (3)
CHEBI:17053 (3)
CHEBI:17964 (3)
CHEBI:16737 (3)
CHEBI:15354 (3)
CHEBI:17295 (3)
CHEBI:29108 (2)
CHEBI:49172 (1)
CHEBI:16412 (1)
CHEBI:34159 (1)
CHEBI:27485 (1)
CHEBI:15554 (1)
CHEBI:15553 (1)
CHEBI:15555 (1)
CHEBI:15843 (1)
CHEBI:35366 (1)
CHEBI:49183 (1)

Metabolite Name

Salicylic acid (2)
Coniferin (2)
Hydroquinone (2)
Inosine (2)
Uracil (2)
Citric acid (2)
Fumaric acid (2)
L-phenylalanine (2)
Citrulline (2)
DUDP (2)
Cholic acid (2)
Citramalic acid (2)
Sedoheptulose (2)
Levoglucosan (2)
3-dihydroxybenzoic acid (1)
G(8-O-4)G(8-O-4)S(8-8)S (1)
G(8-O-4)S(8-O-4)S(8-8)S (1)
G(8-O-4)G(8-O-4)S(8-5)G (1)
G(8-O-4)S (1)
G(8-O-4)S(8-5)G (1)
Salicyloylsalicin-C7H12O7 (1)
7-O-Methylnaringenin-7-furanosyl-(1-6)-glucopyranoside (1)
HCH-salicortin (1)
Grandidentatin like (1)
Aromadendrin 7-O-glucoside (1)
5-hydroxyconiferyl alcohol derivative (1)
G(t8-O-4)G (1)
Salicyloylsalicin (1)
G(8-O-4)G (1)
Coniferyl aldehyde-5-hydroxyconiferyl aldehyde (1)

First Public Date

2023 (23)
2024 (20)
2026 (19)
2025 (17)
2021 (16)
2022 (11)
2014 (10)
2020 (8)
2019 (6)
2018 (4)
2017 (3)
2016 (3)
2013 (3)
2015 (1)

Modelling Approach

Ordinary differential equation model (10)
Constraint-based model (2)
Delayed differential equation model (1)

Study status

Recruiting (1)

Lab affiliation

UCSD (15)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (4)
Tokyo Metropolitan Institute of Medical Science (4)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne 3000, Australia (3)
1) Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA 2) Proteomics Core Facility, Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA 3) Metabolomics Core Facility, Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA (2)
Center for Proteomics & Metabolomics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (2)
Centro de Biología Molecular (CBM) (2)
Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, Nijmegen, The Netherlands (2)
Dept. of Biological Chemistry,The Alexander Silberman Institute of Life Science, The Hebrew University of Jerusalem,Givat Ram Campus, Jerusalem, 91904, Israel (2)
OncoProteomics Laboratory, Dept of Medical Oncology, Amsterdam University Medical Centers, Amsterdam, The Netherlands (2)
The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA (2)
1) Vascular Biology Program, Boston Children's Hospital, Boston, MA, United States 2) Department of Surgery, Boston Children's Hospital and Harvard Medical School, Boston, MA, United States (1)
Associate Professor, Department of biotechnology and research, Sir Ganga ram hospital, New Delhi -110060, Delhi, India (1)
Associate Professor, Vice president of the ISBMB society Dept. of Biological Chemistry, room 1-637 The Alexander Silberman Institute of Life Science The Hebrew University of Jerusalem Givat Ram Campus, Jerusalem, 91904, Israel (1)
Associate Professor, Vice president of the ISBMB society The Center for Nanoscience and Nanotechnology The Alexander Silberman Institute of Life Science Dept. of Biological Chemistry, room 1-637 The Hebrew University of Jerusalem Givat Ram Campus, Jerusalem, 9190401, Israel (1)
Bio-organic chemistry, LIC, Leiden University, Einsteinweg 55, 2333CC, Leiden, The Netherlands (1)
Biosciences Division (1)
Center for Functional Protein Assemblies, Department of Bioscience, TUM School of Natural Sciences, Technical University of Munich, Ernst-Otto-Fischer-Straße 8, 85748 Garching, Germany (1)
Circadian Clock Project, TOkyo Metropolitan Institute of Health Science (1)
Circadian Clock Project, Tokyo Metropolitan Institute of Medical Science (1)
Circadian Clock Project, Tokyo Metropolitan Institute of Medical Science, Kamikitazawa 2-1-6, Setagaya-ku, Tokyo, 156-8506, Japan. (1)
College of Animal Science and Technology, Anhui Agricultural University, P. R. China. (1)
Colorado Center for Reproductive Medicine (1)
Delft University of Technology - TUD Department of Biotechnology, The Netherlands (1)
Department of Biochemistry and Functional Genomic, Université de Sherbrooke, QC, Canada (1)
Department of Biomolecular Medicine, Ghent University, Ghent, Belgium VIB Center for Medical Biotechnology, VIB, Ghent, Belgium (1)
Department of Biotechnology, Delft University of Technology, The Netherlands. (1)
Department of Cell Biology, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Poland (1)
Department of Chemistry, University of Kansas, Lawrence, KS, United States (1)
Department of Chemistry, University of Washington, Seattle, WA, USA (1)

IsPrivate

False (13)

Model Flag

Non Miriam (1)

Submitter Keywords

Immuno-oncology (1)

Classification

bacteria (9)
fungi (1)

Modification

2x(15)N labeled L-lysine (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
4x(15)N labeled L-arginine (1)
4x(2)H labeled dimethylated residue (1)
Not available (1)

Study type

Transcription profiling by array (83)
RNA-seq of coding RNA (25)
ChIP-seq (9)
RNA-seq of non coding RNA (5)
Comparative genomic hybridization by array (3)
Methylation profiling by high throughput sequencing (3)
Unknown experiment type (2)
ChIP-chip by tiling array (2)
Transcription profiling by RT-PCR (2)
Methylation profiling by array (2)
MicroRNA profiling by array (1)
CUT&RUN (1)
Genotyping by high throughput sequencing (1)
Interventional (1)

Release Date

2022 (394)
2021 (346)
2023 (318)
2025 (316)
2020 (288)
2024 (263)
2019 (210)
2018 (185)
2017 (155)
2016 (137)
2014 (117)
2015 (103)
2012 (79)
2013 (67)
2011 (53)
2026 (46)
2010 (44)
2009 (34)
2008 (30)
2007 (16)
2006 (13)
2005 (11)
2004 (9)
2003 (9)
2002 (5)
2000 (2)
1999 (2)
2001 (1)
1998 (1)
1997 (1)

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mRNA cap methylation in pluripotency and differentiation

The mRNA cap recruits factors essential for transcript processing and translation initiation. We report that regulated mRNA cap methylation is a feature of embryonic stem cell (ESC) differentiation. Expression of the mRNA cap methyltransferase activating subunit, RAM, is elevated in ESCs resulting i...

ORGANISM(S): Mus musculus

2016-06-14 | E-GEOD-81849 | biostudies-arrayexpress

Ram kund, Jharkhand

Ram kund, Jharkhand Metagenomic assembly

PRJNA902925 | ENA

Ram seminal plasma - Ram seminal plasma proteome and its impact on liquid preservation of spermatozoa

Seminal plasma proteome of ram and impact on semen liquid preservation.

ORGANISM(S): Ovis aries

2014-08-18 | PXD000822 | Pride

Cryopreservation and egg yolk medium alter the proteome of ram spermatozoa

Cryopreservation causes significant lethal and sub-lethal damage to spermatozoa. In order to improve freezing outcomes, a comprehensive understanding of sub-lethal damage is required. Cryopreservation induced changes to sperm proteins have been investigated in several species, but few have employed ...

ORGANISM(S): Ovis aries

2018-04-26 | PXD009331 | Pride

Swath Sperm Ram

Rnmt and Ram regulate the activated CD4 T cell transcriptome

PRJNA815845 | ENA

Enterobacter hormaechei strain:RAM MAlQtan7980

Enterobacter hormaechei strain:RAM MAlQtan7980 Genome sequencing

PRJNA1233587 | ENA

mRNA cap methyltransferase, RNMT-RAM, promotes RNA pol II transcription

mRNA cap addition occurs early during RNA pol II transcription, facilitating pre-mRNA processing and translation. We report that the mammalian mRNA cap methyltransferase, RNMT-RAM, promotes RNA pol II transcription, independently of mRNA capping and translation. In cells, sub-lethal suppression of R...

ORGANISM(S): Homo sapiens

2018-05-01 | GSE87767 | GEO

Rnmt and Ram regulate the activated CD4 T cell transcriptome

We investigated the role of RNMT and its cofactor RAM in T cells using conditional knockout mouse models. We demonstrate that RNMT and RAM have broadly overlapping roles in CD4 T cell activation.

ORGANISM(S): Mus musculus

2024-04-08 | GSE198541 | GEO

Proteomic characterization and comparison of spermatozoa proteomes between ram (Ovis. aries) and buck (Capra. hircus) using a data-independent acquisition-mass spectrometry (DIA-MS)

Artificial insemination in small ruminants is most commonly performed using fresh semen due to the low fertility rates typically achieved with frozen spermatozoa. Usually, when developing and applying assisted reproductive technologies, sheep and goats are often lumped together as one specie. In ord...

ORGANISM(S): Ovis aries Capra hircus (Goat)

2020-05-26 | PXD014095 | Pride

Proteomics Spermatozoa protein Buck Data-independent acquisition Ram

Long non-coding RNA Linc-RAM enhances myogenic differentiation by interacting with MyoD

Long non-coding RNAs are important regulators of diverse biological prosesses. Here, we report on functional identification and characterization of a novel long intergenic noncoding RNA with MyoD-regulated and skeletal muscle-restricted expression that promotes the activation of the myogenic program...

ORGANISM(S): Mus musculus

2016-12-25 | GSE72601 | GEO

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3614 Results

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