Rat skin tissue

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Transcriptomics (894)
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mixed sample (2)
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activated sludge metagenome (1)

Organisms

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Repository

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Tissue

Skin (8)
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Disease

Normal (5)
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Testicular seminoma (1)
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High grade glioblastoma (1)
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Model of metabolic syndrome (1)
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Sciatic nerve (1)
Skin cancer (1)
Skin melanoma (1)
Squamous cell carcinoma (1)

Technology Type

Mass Spectrometry (14)
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SWATH MS (3)
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Top-down proteomics (1)

Instrument Platform

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N/A (2)
Illumina HiSeq 2000 (2)
Illumina HiSeq 4000 (2)
Liquid Chromatography MS - negative - reverse-phase (2)
FastPrep-24 5G bead beater, Qubit Fluorometer (1)
12 well TC-treated plate, LETs buffer, dry ice (1)
DNBSEQ-G400 FAST (1)
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Beckman Coulter MoFlo XDP (1)
Becton Dickinson INFLUX (1)
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Sony SH800S (1)
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6560 Q-TOF LC/MS (1)
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2015 (144)
2010 (138)
2013 (124)
2014 (108)
2011 (94)
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2007 (27)
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2005 (8)
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2006 (6)
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2004 (5)
2019 (3)
2017 (1)

CHEBI ID

CHEBI:28044 (2)
CHEBI:17750 (2)
CHEBI:15891 (2)
CHEBI:17361 (2)
CHEBI:16750 (2)
CHEBI:17858 (2)
CHEBI:16960 (2)
CHEBI:15422 (2)
CHEBI:16761 (2)
CHEBI:16027 (2)
CHEBI:16680 (2)
CHEBI:17596 (2)
CHEBI:30769 (2)
CHEBI:144332 (1)
CHEBI:77154 (1)
CHEBI:38794 (1)
CHEBI:57579 (1)
CHEBI:21167 (1)
CHEBI:36141 (1)
CHEBI:183886 (1)
CHEBI:28134 (1)
CHEBI:20506 (1)
CHEBI:50281 (1)
CHEBI:16710 (1)
CHEBI:63357 (1)
CHEBI:30657 (1)
CHEBI:13705 (1)
CHEBI:73812 (1)
CHEBI:73928 (1)
CHEBI:73925 (1)

Metabolite Name

Inosine (4)
Betaine (3)
Taurine (3)
Xanthosine (3)
(Z)-2-Decene-4,6,8-triyn-1-ol (2)
3-Oxoglutaric acid (2)
Pteroic acid (2)
3-Carbamoyl-2-phenylpropionaldehyde (2)
2-Hydroxyadipic acid (2)
3-Indole carboxylic acid glucuronide (2)
2-Hydroxydecanedioic acid (2)
4-Hydroxy-5-phenyltetrahydro-1,3-oxazin-2-one (2)
Dioctyl phthalate (2)
Lactulose (2)
D-Galactose (2)
Umbelliferone (2)
4-Pyridoxic acid (2)
D-Lactic acid (2)
Daidzein (2)
Isocitrate (2)
N4-Acetylcytidine (2)
L-Histidine (2)
4-Ethylphenol (2)
Oxoglutaric acid (2)
N-Acetylserotonin (2)
Histamine (2)
Riboflavin (2)
L-Glutamine (2)
D-Proline (2)
D-Mannose (2)

First Public Date

2024 (7)
2014 (6)
2026 (5)
2025 (4)
2022 (3)
2021 (3)
2015 (2)
2023 (1)
2020 (1)
2019 (1)
2018 (1)
2017 (1)
2016 (1)

Study type

Transcription profiling by array (669)
RNA-seq of coding RNA (90)
Unknown experiment type (32)
Comparative genomic hybridization by array (18)
RNA-seq of non coding RNA (15)
ChIP-seq (13)
RNA-seq of coding RNA from single cells (13)
Other (8)
Methylation profiling by array (8)
ChIP-chip by tiling array (6)
Transcription profiling by SAGE (4)
Transcription profiling by tiling array (3)
ChIP-chip by array (3)
Transcription profiling by RT-PCR (3)
Methylation profiling by high throughput sequencing (3)
Genotyping by array (2)
DNA-seq (2)
Transcription profiling by MPSS (1)
Differential (1)
Human - One-color microarray (1)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
Hi-C (1)
ScATAC-seq (1)
Single nucleus RNA sequencing (1)
Proteomic profiling by array (1)
RNA-seq of total RNA (1)

Release Date

2015 (154)
2010 (140)
2013 (128)
2014 (115)
2011 (95)
2012 (92)
2008 (54)
2016 (52)
2023 (50)
2022 (45)
2021 (45)
2025 (41)
2024 (41)
2020 (40)
2009 (31)
2007 (29)
2018 (18)
2017 (18)
2026 (15)
2019 (15)
2005 (11)
2006 (6)
2004 (3)
2000 (1)
1997 (1)

Lab affiliation

1) Department of Analytical Chemistry and Biochemistry, AGH University of Krakow, Krakow, Poland 2) Laboratory of Proteomics and Mass Spectrometry, Maj Institute of Pharmacology, Polish Academy of Sciences, Krakow, Poland (1)
1) Department of Analytical Chemistry and Biochemisty, AGH University of Krakow 2) Laboratory of Proteomics and Mass Spectrometry, Maj Institute of Pharmacology, Polish Academy of Sciences (1)
Bio-X Institutes, Key Laboratory for the Genetics of Development and Neuropsychiatric Disorders (Ministry of Education), Shanghai Key Laboratory of Psychotic Disorders, and Brain Science and Technology Research Center, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, China. (1)
Department of Pharmacology, Yale University School of Medicine (1)
Div. Clinical Protein Science & Imaging, Dept. of Clinical Sciences (Lund) and Dept. of Biomedical Engineering, Lund University, Lund, Sweden (1)
Experimental Research Center, China Academy of Chinese Medical Sciences, Beijing, China (1)
Head | Department of Dermatology - Westmead Hospital Academic Leader (HDR PGC) | Sydney Medical School Director | Centre for Translational Skin Research (1)
Huashan Hospital, Fudan University (1)
Institute of Health and Sport Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba 305-8574, Ibaraki, Japan (1)
Institute of bioengineering, School of Life science, EPFL, Switzerland (1)
Laboratory for Mucosal Immunology, Department of Health Sciences and Technology, ETH Zurich, CH-8093 Zurich, Switzerland (1)
Nutrigenomics and Fish Growth Endocrinology Group, Institute of Aquaculture Torre de la Sal, IATS-CSIC, Spain (1)
School of Medicine, Southeast University, 210009, Nanjing, China. (1)
University (1)

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Melanopsin (OPN4) is a novel player in skin homeostasis and attenuates UVA-induced effects

The presence of melanopsin (OPN4) has been shown in cultured murine melanocytes and was associated with ultraviolet A radiation (UVA) reception. We demonstrated the protective role of OPN4 in skin physiology and the increased UVA-induced damage in its absence using proteomics analysis.

ORGANISM(S): Mus Musculus (ncbitaxon:10090)

2023-03-29 | MSV000091592 | MassIVE

Expression data from rat urinary bladder and non-glandular stomach tissue samples

Seven novel and potent Raf small molecule kinase inhibitors were evaluated in 7-day oral repeat-dose rat toxicity studies. All compounds tested induced hyperplasia in multiple tissues. Microarrays were used to investigate transciptional changes associated by treatment with a single compound to gain ...

ORGANISM(S): Rattus norvegicus

2011-07-18 | E-GEOD-26936 | biostudies-arrayexpress

Transcription profiling of rat skin samples from animals treated with electron irradiation and fed on vitamin A supplements

Analysis of gene expression in skin of rats subjected to electron irradiation and the effect of vitamin A supplements.

ORGANISM(S): Rattus norvegicus

2007-10-10 | E-GEOD-284 | biostudies-arrayexpress

Genome-wide Transcriptional Profiling of Skin and Dorsal Root Ganglia after Ultraviolet-B-Induced Inflammation

Ultraviolet-B (UVB) irradiation of the skin was performed on rat (skin and DRG) and human (skin) tissue. The resulting changes in gene expression were then profiled by using RNA-seq to compare gene expression between irradiated and non-irradiated samples Poly(A) selected RNA was sequenced for 5 irra...

ORGANISM(S): Homo sapiens

2014-03-01 | E-GEOD-54413 | biostudies-arrayexpress

Microarray data of rat expanded skin tissue

The skin expansion technique is widely applied in Plastic and Reconstructive Surgeries. Skin expansion induces skin growth and is an ideal approach for large-scale skin deformity reconstruction. However, the capacity for skin expansion is limited and searching for ways to enhance the expansion effic...

ORGANISM(S): Rattus norvegicus

2020-03-04 | E-MTAB-8304 | biostudies-arrayexpress

Profiling skin from Carrageenan (CGN) rat model for inflammation pain

This program aims at identifying a skin gene signature associated with inflammation pain in rat CGN model The profiling data was analyzed by identifying genes that were up- and down-regulated at selected p value and fold change in the skin of rats treated with CGN (to induce pain) compared to the co...

ORGANISM(S): Rattus norvegicus

2013-03-22 | E-GEOD-38072 | biostudies-arrayexpress

Gene regulation in denervated hairy skin of the adult rat

This study aimed to quantify the regulation of transcripts in the hairy skin of the back of adult rats in the condition of loss of sensory and autonomic (sympathetic) innervation (i.e., denervated). Denervated skin has reduced wound healing capacity, reduced proliferation of epidermal progenitor cel...

ORGANISM(S): Rattus norvegicus

2014-04-08 | E-GEOD-54356 | biostudies-arrayexpress

Proteomics of antler protein extract and rat skin tissue

In this experiment, a rat model of full-thickness skin resection was used to observe the effect of antler protein extract ( PAE ) on wound healing, and its pharmacodynamic effect on wound healing and possible regulatory mechanism were further analyzed. Rats were randomly divided into PAE group and N...

ORGANISM(S): Theileria sp. ex Hiroshima Sika Deer

2026-02-09 | PXD037328 | Pride

Regulation of human skin pigmentation in situ by repetitive UV exposure - Molecular characterization of responses to UVA, UVB and SSR

To test the hypothesis that different mechanisms and/or factors might be involved in physiological pigmentary responses of the skin to different types of UV, we used whole human genome microarrays and immunohistochemical analyses to characterize human skin in situ to examine how melanocyte-specific ...

ORGANISM(S): Homo sapiens

2010-08-18 | E-GEOD-21429 | biostudies-arrayexpress

RNA sequencing reveals differential expression of mitochondrial and oxidation reduction genes in the long-lived naked mole-rat when compared to mice.

The goal was to find genes which are differentially expressed between the naked mole-rat (Heterocephalus glaber) and the wild-type mice liver tissue. The genes which are most differentially expressed may provide a clue for the remarkable differences between naked mole-rat and mouse in terms of longe...

ORGANISM(S): Heterocephalus glaber

2011-11-07 | E-GEOD-30764 | biostudies-arrayexpress

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