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ProteomicsComprehensive proteomic analysis of Penicillium verrucosum
In the present study we used OTA producing Penicillium verrucosum to identify and quantify proteins of an organism with yet no protein information available. We were able to identify 3632 proteins in an "ab initio" translated database from DNA sequences of P. verrucosum. Additionally a SWATH analysi...
ORGANISM(S): Penicillium verrucosum 
2017-03-16 | PXD005459 | Pride
Shotgun proteomics Swath Fungal proteomics Penicillium verrucosum 
TranscriptomicsTranscription profiling by array for comparison of industrial Escherichia coli strains on growth, transcriptome and proteome level in batch cultivations to identify strain specific features (subexperiment BL21 platform)
The objective of the current study was to evaluate the performance of frequently used E. coli BL21 in the context of industrial cultivations. To meet this objective, we carried out batch cultivations with high-glucose media in computer-controlled bioreactors and applied transcriptome analysis to int...
ORGANISM(S): Escherichia coli 
2013-08-19 | E-MARS-21 | biostudies-arrayexpress
TranscriptomicsTranscription profiling by array for comparison of industrial Escherichia coli strains on growth, transcriptome and proteome level in batch cultivations to identify strain specific features (subexperiment K-12 platform)
The objective of the current study was to evaluate the performance of frequently used E. coli K-12 strains HMS174 and RV308 in the context of industrial cultivations. To meet this objective, we carried out batch cultivations with high-glucose media in computer-controlled bioreactors and applied tran...
ORGANISM(S): Escherichia coli 
2013-08-19 | E-MARS-20 | biostudies-arrayexpress
ProteomicsQuantification of highly homologous Major Urinary Proteins in wild house mice
Male house mice were housed under semi-natural conditions and their urinary proteins were quantified using MS1 and MS2 based label-free strategies. This dataset consists of 52 raw MS files, comprising 26 DIA (SWATH) and 26 IDA runs on a TripleTOF 5600. The composition of the dataset is described in ...
ORGANISM(S): Mus musculus (Mouse) 
2016-08-08 | PXD004642 | Pride
Proteomics Swath Behavioural biology Label-free Mups 
ProteomicsFactors of metronidazole resistance in the human parasite Trichomonas vaginalis
Trichomonas vaginalis is a sexually transmitted human parasite causing trichomoniasis, leading to vaginitis or cervicitis in many patients. Furthermore, infections can lead to premature labour or loss of child as well as an increase in the risk of contracting HIV. For treatment the antibiotic 5-nitr...
ORGANISM(S): Trichomonas vaginalis 
2025-03-10 | PXD051345 | Pride
Trichomonas vaginalis Metronidazole resistance Parasite Sexually transmitted disease Antibiotic resistance Comparative proteomic analysis Lc-ms/ms 
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