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UnknownpyRBDome: a comprehensive computational platform for enhancing RNA-binding proteome data.
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S-EPMC11289467 | biostudies-literature
OtherGlobal mapping of RNA-binding domains in multi-drug resistant Staphylococcus aureus
Using improved and robust biochemical methods, we present the first global analysis of RNA-binding proteins (RBPs) and RNA-binding domains (RBDs) in clinically relevant and multi-drug resistant Gram-positive bacteria. To validate our results in silico, we developed novel bioinformatics tools that co...
ORGANISM(S): Staphylococcus aureus subsp. aureus USA300 
2022-05-04 | GSE163719 | GEO
TranscriptomicsGlobal identification of RNA-binding proteins and RNA-binding domains in methicillin-resistant Staphylococcus aureus
Using improved and robust biochemical methods, we present the first global analysis of RNA-binding proteins (RBPs) and RNA-binding domains (RBDs) in clinically relevant and multi-drug resistant Gram-positive bacteria. To validate our results in silico, we developed novel bioinformatics tools that co...
ORGANISM(S): Staphylococcus aureus 
2022-05-04 | GSE189977 | GEO
GenomicsGlobal mapping of RNA-binding domains in multi-drug resistant Staphylococcus aureus
Global mapping of RNA-binding domains in multi-drug resistant Staphylococcus aureus
PRJNA687253 | ENA
ProteomicsGlobal mapping of RNA-binding proteins in multi-drug resistant Staphylococcus aureus using 2C_2
S. aureus strain JKD6009 RNase III-HTF and USA300 RNase III-HTF were used in our study to capture the RNA-binding proteome in Staphylococcus aureus. Both strains were inoculated in TSB (Tryptone soya broth, Oxioid CM0129) and overnight cultured in 37°C, 200 rpm shaker. Strain JKD6009 RNase III-HTF w...
ORGANISM(S): Staphylococcus aureus 
2022-05-31 | PXD023427 | Pride
Silica purification Uv cross-linking Rbdome Protein-rna interactions Rna-binding proteins Rbpome Staphylococcus aureus 
ProteomicsGlobal mapping of RNA-binding proteins in multi-drug resistant Staphylococcus aureus using 2C_1
S. aureus strain JKD6009 RNase III-HTF and USA300 RNase III-HTF were used in our study to capture the RNA-binding proteome in Staphylococcus aureus. Both strains were inoculated in TSB (Tryptone soya broth, Oxioid CM0129) and overnight cultured in 37°C, 200 rpm shaker. Strain JKD6009 RNase III-HTF w...
ORGANISM(S): Staphylococcus aureus 
2022-05-31 | PXD023368 | Pride
Silica purification Uv cross-linking Rbdome Protein-rna interactions Rna-binding proteins Rbpome Staphylococcus aureus 
ProteomicsGlobal mapping of RNA-binding proteins in multi-drug resistant Staphylococcus aureus using 2C_3
S. aureus strain JKD6009 RNase III-HTF and USA300 RNase III-HTF were used in our study to capture the RNA-binding proteome in Staphylococcus aureus. Both strains were inoculated in TSB (Tryptone soya broth, Oxioid CM0129) and overnight cultured in 37°C, 200 rpm shaker. Strain JKD6009 RNase III-HTF w...
ORGANISM(S): Staphylococcus aureus 
2022-05-31 | PXD023408 | Pride
Silica purification Uv cross-linking Rbdome Protein-rna interactions Rna-binding proteins Rbpome Staphylococcus aureus 
ProteomicsGlobal mapping of RNA-binding proteins in multi-drug resistant Staphylococcus aureus using PTex
Phenol Toluol extraction (PTex) carried out two steps organic-phase separation: first pH neutral phenol–Toluol extraction separated RNA and protein from DNA: RNA and proteins to the top aqueous phase but DNA and membranes in the interface. Aqueous phase then went through two rounds acid-phenol extra...
ORGANISM(S): Staphylococcus aureus 
2022-05-31 | PXD023414 | Pride
Uv cross-linking Rbdome Protein-rna interactions Organic phase purification Rna-binding proteins Rbpome Staphylococcus aureus 
GenomicsGlobal identification of RNA-binding proteins and RNA-binding domains in methicillin-resistant Staphylococcus aureus
Global identification of RNA-binding proteins and RNA-binding domains in methicillin-resistant Staphylococcus aureus
PRJNA785458 | ENA
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