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MetabolomicsMetabolic Dynamics in Escherichia coli-Based Cell-Free Systems
The field of metabolic engineering has yielded remarkable accomplishments in using cells to produce valuable molecules, and cell-free expression (CFE) systems have the potential to push the field even further. However, CFE systems still face some outstanding challenges, including endogenous metaboli...
2023-02-22 | MTBLS2630 | MetaboLights
ProteomicsSignal Attrition in Whole Cell Crosslinking Mass Spectrometry
We investigated points in the typical sample workflow that could contribute to the perceived low cross-linking yields. We demonstrate, through a 2-step cross-linking strategy called Click-Linking, that the chemical reaction is not the main contributor to the low number of identified cross-links. We ...
ORGANISM(S): Homo sapiens (Human) 
2025-11-18 | PXD069512 | Pride
Cross-linking Xl-ms Reaction yield 
UnknownEnhancing Generic Reaction Yield Prediction through Reaction Condition-Based Contrastive Learning.
Not available
S-EPMC10777739 | biostudies-literature
ProteomicsDeciphering Diazirine Reaction Mechanism: through Irradiation Modulation for Residue-Specific Distance Restraints in Protein Photo-Crosslinking
The diazirine photoreactive group has been widely used for photo-labeling and photo-cross-linking (PXL) of proteins. Yet, due to the mechanistic complexity of diazirine photo-reaction, site-specific and quantitative analysis of protein PXL data remains challenging. Herein, we have built an in-line p...
ORGANISM(S): Bos taurus (Bovine) 
2024-06-22 | PXD048452 | Pride
Photo cross-linking Multiple reaction monitoring Optical power density Distance restraints Alkyl diazirine 
UnknownReaction classification and yield prediction using the differential reaction fingerprint DRFP.
Not available
S-EPMC8996827 | biostudies-literature
GenomicsStereoselective RNA Reaction with Chiral 2'-OH Acylating Agents
Stereoselective RNA Reaction with Chiral 2'-OH Acylating Agents
PRJNA1039745 | ENA
GenomicsNext Generation Sequencing of tomato germplasm for cold tolerance and yield studies
Purpose: Next-generation sequencing (NGS) has revolutionized systems-based analysis of cellular pathways. The goal of this study is genome wide association mapping for cold tolerance and yield studies in tomato (Solanum spp.) by phenotyping the genotypes under six diffrent temporal arrangments. Also...
ORGANISM(S): Solanum peruvianum Solanum pimpinellifolium Solanum chilense Solanum lycopersicum var. cerasiforme Solanum lycopersicum Solanum habrochaites 
2023-04-01 | GSE200034 | GEO
UnknownChemical Graph-Based Transformer Models for Yield Prediction of High-Throughput Cross-Coupling Reaction Datasets.
Not available
S-EPMC11447720 | biostudies-literature
GenomicsNext Generation Sequencing of tomato germplasm for cold tolerance and yield studies
Next Generation Sequencing of tomato germplasm for cold tolerance and yield studies
PRJNA822769 | ENA
UnknownImproving chemical reaction yield prediction using pre-trained graph neural networks.
Not available
S-EPMC10905905 | biostudies-literature
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