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TranscriptomicsRNA sequencing to assess the transcriptional dynamics of infection when Fusarium oxysporum f. sp. lycopersici (Fol) WT and erc3 (Early Root Colonisation 3) knock out strain infect Marchantia polymorpha Tak-1 thalli
21 DPI Marchantia polymorpha Tak-1 thalli were infected with Fol WT and erc3 knock out alongside mock(water) control and axenically grown Fol WT culture. At 3 days post infection, thalli were harvested and RNA was extracted. After polyA enrichment, and library preparation, sequencing was carried on...
ORGANISM(S): Marchantia polymorpha subsp. polymorpha 
2026-05-04 | E-MTAB-15091 | biostudies-arrayexpress
TranscriptomicsDissecting the root-fungal interface in 3D reveals spatial-distinct signalling landscapes
This submission comprises all raw sequencing reads generated and/or utilised in the analyses presented in the associated manuscript. The dataset comprises two independent experimental datasets, each designed to address distinct biological questions regarding the transcriptional behaviour of Fusarium...
ORGANISM(S): Fusarium oxysporum 
2026-08-14 | E-MTAB-17442 | biostudies-arrayexpress
TranscriptomicsRNA sequencing for axenically grown Fol and Fo47 fungal cultures as well as Marchantia polymorpha Tak1 thalli infected with these strains
RNA was extracted from axenically grown Fo47 and Fol cultures and Marchantia polymorpha Tak1 thalli infected with these strains at 3DPI. There are 3 biological replicates in each set. Sequencing was carried out using NovaSeq 6000 platform using SP flowcell with 2x100bp sequencing read length.
ORGANISM(S): Fusarium oxysporum 
2026-05-04 | E-MTAB-15092 | biostudies-arrayexpress
TranscriptomicsRNA-Seq of infected Tomato roots by the vascular wilt fungus Fusarium oxysporum
The biological relevance of the experiment was to mainly understand the F. oxysporum genes that are involved in the colonization of tomato roots during early interaction timepoints of 1, 2, 3 and 7 days post infection as compared to the in vitro grown axenic sample.
ORGANISM(S): Fusarium oxysporum 
2022-11-30 | E-MTAB-10597 | biostudies-arrayexpress
ProteomicsConserved secreted effectors contribute to endophytic growth and multihost plant compatibility in a vascular wilt fungus
Fungal interactions with plant roots, either beneficial or detrimental, have a major impact on agriculture and ecosystems1. The soil inhabiting ascomycete Fusarium oxysporum (Fo) constitutes a species complex of worldwide distribution causing vascular wilt in more than a hundred different crops2,3. ...
ORGANISM(S): Fusarium oxysporum f. sp. lycopersici 4287 
2022-09-12 | PXD026400 | Pride
Apoplastic fluid Lc-msms Fusarium oxysporum 
TranscriptomicsA secreted effector protein of Ustilago maydis guides maize leaf cells to form tumors
Zea mays transcriptome profiling of infected seedlings by the Ustilago maydis wildtype and the seedling specific effector mutant demonstrated the variation of gene expression in the mutant and the classes of genes that are absent in the mutant as compared to the wildtype U. maydis SG200 strain. Two ...
ORGANISM(S): Zea mays 
2015-03-09 | E-GEOD-63077 | biostudies-arrayexpress
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