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ProteomicsComparative integrated omics analysis of the Hfq regulon in Bordetella pertussis
This study represents the first attempt to characterize the RNA chaperone Hfq regulon in bacterial pathogen using an integrative omics approach. Gene expression profiles were analyzed by RNA-seq and protein amounts in cell-associated and cell-free fractions were determined by LC-MS/MS technique. Com...
ORGANISM(S): Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) 
2019-07-02 | PXD013953 | Pride
Hfq regulon Lfq ms Bordetella pertussis 
GenomicsThe QstR regulon of Vibrio cholerae
The QstR regulon of Vibrio cholerae
PRJNA471867 | ENA
TranscriptomicsCharacterization of the GbdR regulon in Pseudomonas aeruginosa
Pseudomonas aeruginosa displays tremendous metabolic diversity, controlled in part by the abundance of transcription regulators in the genome. We have been investigating P. aeruginosaM-bM-^@M-^Ys response to the host, particularly changes regulated by the host-derived quaternary amines choline and g...
ORGANISM(S): Pseudomonas aeruginosa 
2013-10-23 | E-GEOD-49759 | biostudies-arrayexpress
TranscriptomicsThe unique roles of DosT and DosS in DosR regulon induction and Mycobacterium tuberculosis dormancy
In Mycobacterium tuberculosis, the sensor kinases DosT and DosS activate the transcriptional regulator DosR, resulting in the induction of the DosR regulon, important for anaerobic survival and perhaps latent infection. The individual and collective roles of these sensors has been postulated biochem...
ORGANISM(S): Mycobacterium tuberculosis H37Rv 
2009-06-26 | E-GEOD-16811 | biostudies-arrayexpress
TranscriptomicsRarA Regulon
The experimental design was to determine the regulon of the transcriptional activator RarA. This was done by comparing the transcriptome profiles between a rarA overexpressor and the baseline control. RarA overexpression was achieved by plasmid mediated overexpression of the rarA gene and the baseli...
ORGANISM(S): Klebsiella pneumoniae 
2013-03-21 | E-MEXP-3742 | biostudies-arrayexpress
GenomicsThe TyrR regulon of Enterobacter ludwigii UW5
The TyrR regulon of Enterobacter ludwigii UW5
PRJNA505632 | ENA
GenomicsCzcR regulon under zinc sufficient and zinc excess conditions in Pseudomonas aeruginosa
CzcR regulon with ChIPseq
PRJEB104501 | ENA
TranscriptomicsIdentification of HP0244 regulon at different pH conditions
Transcriptional profiling of Helicobacter pylori comparing 26695 wild-type strain and a HP0244-deficient mutant 26695/∆HP0244::km treated at three different pH conditions (pH 7.4, pH 4.5 without urea, or pH 2.5 with 30 mM urea) for 30 min to define the HP0244 acid-responsive regulon Keywords: Gen...
ORGANISM(S): Helicobacter pylori 
2010-05-05 | E-GEOD-12900 | biostudies-arrayexpress
ProteomicsA post-transcriptional respiratome regulon in trypanosomes
Post-transcriptional regulons coordinate the expression of groups of genes in eukaryotic cells, yet relatively few have been characterised. Parasitic trypanosomatids are particularly good models for studies on such mechanisms because they exhibit almost exclusive polycistronic, and unregulated, tran...
ORGANISM(S): Trypanosoma brucei 
2019-11-13 | PXD012450 | Pride
Silac Zc3h39/40 Trypanosoma brucei 
GenomicsRNA-seq of strains grown under the control of native galactose regulon or synthetic xylose regulon vs constitutive expression of galactose and xylose metabolic genes
RNA-seq of strains grown under the control of native galactose regulon or synthetic xylose regulon vs constitutive expression of galactose and xylose metabolic genes
PRJNA434650 | ENA
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