Reid E E - OmicsDI

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Unknown (1659)
Transcriptomics (84)
Proteomics (45)
Genomics (22)
Metabolomics (4)

Organisms

Homo sapiens (60)
Mus musculus (13)
Vitis vinifera (12)
Rattus norvegicus (5)
Zea mays (4)
Enterococcus faecalis (2)
Botrytis cinerea B05.10 (1)
Vitis riparia (1)
Euglena gracilis (1)
Quercus suber (1)
Musca domestica (1)
Dictyostelium discoideum (1)
Eimeria tenella (1)
Plasmodium chabaudi chabaudi (1)
Macaca mulatta (1)
Medicago truncatula (1)
Listeria monocytogenes (1)
Plasmodium falciparum 3D7 (1)
Hordeum vulgare (1)
Bos taurus (1)
Plasmodium falciparum (1)
Saccharomyces cerevisiae (1)
Drosophila melanogaster (1)
Neospora caninum (1)
Toxoplasma gondii (1)
Babesia bigemina (1)
Babesia sp. (1)
Phaeocystis antarctica (1)

Organisms

Neospora caninum (1)
Toxoplasma gondii (1)

Repository

biostudies-arrayexpress (84)
MassIVE (25)
EGA (18)
pride (18)
MetaboLights (4)
geo (2)
PeptideAtlas (2)
ENA (2)

Tissue

Myeloid cell (3)
Cell culture (2)
Myeloid cell line (2)
T cell (2)
Female Reproductive System (1)
Ovary (1)
B cell (1)
Blood cell (1)
Cardiomyocyte cell line (1)
Cell suspension culture (1)
Endothelial cell of umbilical vein (1)
Fibroblast (1)
Liver (1)
Permanent cell line cell (1)
Photosynthetic cell (1)
Tooth enamel (1)

Disease

Acute myeloid leukemia (3)
CAMN (1)
E. lata infected plant without symptoms (1)
Infected by E. lata strain NE85-1 (1)
Breast cancer (1)
High Grade Ovarian Serous Adenocarcinoma (1)
Amyotrophic lateral sclerosis (1)
Disease free (1)
Hepatocellular carcinoma (1)
Mitochondrial metabolism disease (1)

Technology Type

Mass Spectrometry (18)
Shotgun proteomics (7)
Bottom-up proteomics (5)
Mass spectrometry (4)
SWATH MS (3)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Data-dependent acquisition (2)
Data-independent acquisition (2)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)

Instrument Platform

LTQ Orbitrap Velos (14)
Illumina HiSeq 2500 (5)
Q Exactive (5)
Q Exactive Plus (4)
NextSeq 500 (3)
Illumina NovaSeq 6000 (2)
LTQ Orbitrap Elite (2)
LTQ Orbitrap XL (2)
TimsTOF Pro (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
Illumina Genome Analyzer (1)
GenePix Professional 4200A [Axon Instruments] (1)
GenePix 4000B [Axon Instruments] (1)
GridION (1)
DNBSEQ-G400 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 4000 (1)
LTQ Velos (1)
Orbitrap Fusion Lumos (1)
Synapt XS (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2011 (18)
2012 (14)
2010 (12)
2019 (11)
2014 (10)
2022 (8)
2015 (8)
2023 (7)
2024 (5)
2021 (5)
2026 (5)
2013 (4)
2008 (4)
2025 (2)
2016 (2)
2009 (2)
2018 (2)
2020 (2)
2017 (1)
2007 (1)
2006 (1)

UNIPROT ID/AC

A0A024R563 (2)
A0A024R8H9 (2)
A0A024RAN2 (2)
A0A024RC46 (2)
A0A087WT59 (2)
A0A087WTX5 (2)
A0A087WVW2 (2)
A0A087WWK8 (2)
A0A087WYL9 (2)
A0A087WZE9 (2)
A0A087X130 (2)
A0A087X1V9 (2)
A0A087X232 (2)
A0A0A0MR66 (2)
A0A0A0MS07 (2)
A0A0A0MS51 (2)
A0A0A0MSA7 (2)
A0A0C4DG89 (2)
A0A0C4DGT3 (2)
A0AVT1 (2)
A0FGR8 (2)
A0FGR8-2 (2)
A0FGR8-6 (2)
A0JLT2 (2)
A0JNW5 (2)
A0M8Q6 (2)
A0MZ66 (2)
A0N5G5 (2)
A1IGU5 (2)
A1L020 (2)

ENSEMBL ID

ENSG00000147251 (2)
ENSG00000204131 (2)
ENSG00000229353 (2)
ENSG00000247315 (2)
ENSG00000170477 (1)

CHEBI ID

CHEBI:16870 (4)
CHEBI:15891 (3)
CHEBI:15354 (2)
CHEBI:15699 (2)
CHEBI:16010 (2)
CHEBI:16335 (2)
CHEBI:16704 (2)
CHEBI:16828 (2)
CHEBI:16857 (2)
CHEBI:16919 (2)
CHEBI:16946 (2)
CHEBI:18237 (2)
CHEBI:18344 (2)
CHEBI:30797 (2)
CHEBI:36274 (2)
CHEBI:37550 (2)
CHEBI:42111 (2)
CHEBI:73024 (2)
CHEBI:10072 (1)
CHEBI:104011 (1)
CHEBI:1148 (1)
CHEBI:116314 (1)
CHEBI:131993 (1)
CHEBI:132494 (1)
CHEBI:132502 (1)
CHEBI:132538 (1)
CHEBI:132539 (1)
CHEBI:132541 (1)
CHEBI:132542 (1)
CHEBI:132544 (1)

Metabolite Name

Choline (2)
Sn-glycero-3-phosphocholine (2)
(S)-AMPA (1)
1-octadecanoyl-sn-glycero-3-phosphocholine (1)
11,12-DiHETrE (1)
11,12-Epoxyeicosatrienoic acid (1)
11-HETE (1)
12-HETE (1)
12-Ketolithocholic acid (1)
13,14-Dihydro-15-keto PGF2a (1)
13S-hydroxyoctadecadienoic acid (1)
14,15-DHET (1)
14,15-Epoxy-5,8,11-eicosatrienoic acid (1)
15-HETE (1)
2,3-Dihydroxybenzoic acid (1)
2,3-Diphosphoglyceric acid (1)
2,4-Dinitrophenol (1)
2-Hydroxy-3-methylbutyric acid (1)
2-Hydroxybenzoic acid (1)
2-Hydroxybutanoic acid (1)
2-Isopropylmalic acid (1)
2-Ketobutyric acid (1)
2-Ketohexanoic acid (1)
2-Methylcitric acid (1)
2-Naphthalenesulfonic acid (1)
2-Pyrocatechuic acid (1)
20-Hydroxyeicosatetraenoic acid (1)
23-Nordeoxycholic acid (1)
3-Hydroxybenzaldehyde (1)
3-Hydroxybutanoic acid (1)

First Public Date

2013 (2)

Classification

protozoa (1)

Study type

Transcription profiling by array (41)
RNA-seq of coding RNA (19)
Methylation profiling by array (9)
Other (3)
Methylation profiling by high throughput sequencing (2)
ChIP-chip by tiling array (1)
Plant - High-throughput sequencing (1)
Trajectory (1)
RNAi profiling by array (1)
Transcription profiling by RT-PCR (1)
Comparative genomic hybridization by array (1)
MicroRNA profiling by array (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of total RNA (1)
RNA-seq of non coding RNA (1)

Release Date

2021 (203)
2023 (184)
2025 (175)
2022 (175)
2024 (140)
2020 (123)
2019 (99)
2018 (83)
2014 (77)
2017 (75)
2015 (70)
2013 (53)
2016 (53)
2012 (49)
2011 (47)
2010 (41)
2009 (25)
2026 (22)
2008 (18)
2007 (9)
2006 (7)
2005 (3)
2004 (3)
2000 (3)
2003 (2)
2002 (2)
1999 (1)
1998 (1)

Lab affiliation

Department of Microbiology and Immunology, The University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne, Australia. (2)
Dept. of Laboratory Medicine University of California, San Francisco, USA (2)
Roswell Park Cancer Center Buffalo, NY, USA (2)
School of Life and Environmental Sciences, University of Sydney, NSW 2006 Australia (2)
BioArch South, Waitati, New Zealand (1)
CRUK Beatson Institute (1)
Department of Biology, Dalhousie University, Halifax Nova Scotia Canada B3H-4R2 (1)
Dept. of Laboratory Medicine University of California, San Francisco USA (1)
Harry Perkins Institute of Medical Research, QEII Medical Centre, Nedlands, Western Australia 6009, Australia (1)
Infection Biology (1)
NHMRC Senior Research Fellow Department of Biochemistry and Molecular Biology | Faculty of Medicine, Dentistry and Health Sciences Level 2 South, Bio21 Molecular Science and Biotechnology Institute, 30 Flemington Road The University of Melbourne, Victoria 3010 Australia T: +61 3 8344 2530 | E: dhatters@unimelb.edu.au (1)
Professor Anthony W Purcell Deputy Head (Research), Department of Biochemistry and Molecular Biology Head Immunoproteomics Laboratory Monash University, Clayton Campus Clayton 3800 Victoria Australia (lab head) (1)
The University of Melbourne (1)
Toronto General Hospital Research Institute, UniversityHealth Network, Toronto, Canada Department of Medicine, Division of Nephrology, University Health Network, Toronto, Canada (1)

Tags

pathogen:protozoan (1)
pathogen (1)

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Transcription profiling of Vitis vinifera cv. Cabernet-Sauvignon leaves obtained from plants grown in different enviroments and infected with vascular ascomycete fungus Eutypa lata.

Eutypa dieback is a vascular disease that may severely affect vineyards throughout the world. In the present work, microarrays analysis were made in order (i) to improve our knowledge of grapevine (Vitis vinifera cv. Cabernet-Sauvignon) responses to Eutypa lata, the causal agent of Eutypa dieback an...

ORGANISM(S): Vitis vinifera

2010-03-01 | E-MEXP-2337 | biostudies-arrayexpress

E-Cigarette Flavors, Devices, and Brands Used by Youths Before and After Partial Flavor Restrictions in the United States: Canada, England, and the United States, 2017‒2020.

Not available

S-EPMC9222458 | biostudies-literature

Comparative evolutionary analysis of protein complexes in E. coli and yeast.

Not available

S-EPMC2837643 | biostudies-literature

Awareness and use of short-fill e-liquids by youth in England in 2021: findings from the ITC Youth Tobacco and Vaping Survey.

Not available

S-EPMC10620100 | biostudies-literature

Impact of E-liquid Packaging on Vaping Product Perceptions Among Youth in England, Canada, and the United States: A Randomized Online Experiment.

Not available

S-EPMC10882429 | biostudies-literature

FPOP AMP-Nanodisc Paper Reid et. Al. 2021

Raw and processed data from FPOP analysis of bovine indolicidin and human LL-37 antimicrobial peptides with nanodiscs composed of DMPC, DMPG, or E. coli polar lipid extract. Data is provided for both oxidized samples and control samples with no exposure to the UV laser.

ORGANISM(S): Bos Taurus (ncbitaxon:9913) Escherichia Coli (ncbitaxon:562) Homo Sapiens (ncbitaxon:9606)

MSV000088174 | MassIVE

Sequence diversity of the Escherichia coli H7 fliC genes: implication for a DNA-based typing scheme for E. coli O157:H7.

Not available

S-EPMC86588 | biostudies-literature

Development and validation of a liquid chromatography-mass spectrometry assay for quantification of Z- and E- isomers of endoxifen and its metabolites in plasma from women with estrogen receptor positive breast cancer.

Not available

S-EPMC10249430 | biostudies-literature

Packaging of disposable vaping products and e-liquids in England, Canada and the United States: A content analysis.

Not available

S-EPMC11813724 | biostudies-literature

Transcription profiling of Cabernet Sauvignon grape vine leaves from plantlets infected with the fungal pathogen Eutypa lata