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ProteomicsEvaluation of different data-driven rescoring platforms to increase peptide identifications in HeLa digest samples
Evaluate the performance of different rescoring platforms with the aim of standardizing pipelines within our research group.
ORGANISM(S): Homo sapiens (Human) 
2025-05-07 | PXD052875 | Pride
Hela samples Rescoring pipelines 
ProteomicsRescoring approaches improve consensus in peptide identification across diverse search engines and datasets - CAMPI reanalysis
Peptide–spectrum match (PSM) rescoring has become standard in proteomics workflows, improving peptide identification accuracy across diverse search engines. Despite the availability of multiple rescoring strategies, systematic comparisons spanning several search engines, datasets, and database confi...
ORGANISM(S): Lactobacillus plantarum Anaerostipes caccae Thomasclavelia ramosa Bacteroides thetaiotaomicron Escherichia coli Bifidobacterium longum Blautia producta Clostridium butyricum 
2026-09-11 | PXD075141 | Pride
Rescoring Reanalysis Metaproteomics Comparison Proteomics 
ProteomicsRescoring approaches improve consensus in peptide identification across diverse search engines and datasets - Cancer Array reanalysis
Peptide–spectrum match (PSM) rescoring has become standard in proteomics workflows, improving peptide identification accuracy across diverse search engines. Despite the availability of multiple rescoring strategies, systematic comparisons spanning several search engines, datasets, and database confi...
ORGANISM(S): Homo sapiens (Human) 
2026-09-11 | PXD075199 | Pride
Rescoring Reanalysis Metaproteomics Comparison Proteomics 
ProteomicsRescoring approaches improve consensus in peptide identification across diverse search engines and datasets - Orbitrap benchmark reanalysis
Peptide–spectrum match (PSM) rescoring has become standard in proteomics workflows, improving peptide identification accuracy across diverse search engines. Despite the availability of multiple rescoring strategies, systematic comparisons spanning several search engines, datasets, and database confi...
ORGANISM(S): Homo sapiens (Human) 
2026-09-11 | PXD075209 | Pride
Rescoring Reanalysis Metaproteomics Comparison Proteomics 
ProteomicsRescoring approaches improve consensus in peptide identification across diverse search engines and datasets - timsTOF benchmark reanalysis
Peptide–spectrum match (PSM) rescoring has become standard in proteomics workflows, improving peptide identification accuracy across diverse search engines. Despite the availability of multiple rescoring strategies, systematic comparisons spanning several search engines, datasets, and database confi...
ORGANISM(S): Homo sapiens (Human) 
2026-09-11 | PXD075206 | Pride
Rescoring Reanalysis Metaproteomics Comparison Proteomics 
ProteomicsMS²Rescore: Data-driven rescoring dramatically boosts immunopeptide identification rates
Immunopeptidomics aims to identify Major Histocompatibility Complex-presented peptides on every cell that can be used in anti-cancer vaccine development. However, existing immunopeptidomics data analysis pipelines suffer from the non-tryptic nature of immunopeptides, complicating their identificatio...
ORGANISM(S): Homo sapiens (Human) 
2022-07-11 | PXD033868 | Pride
Q exactive hf-x Human Immunopeptidomics 
ProteomicsinSPIRE Spectral Rescoring Tool
inSPIRE is an open-source tool for spectral rescoring of mass spectrometry search results. For this project, inSPIRE was applied to MaxQuant, PEAKS DB, and Mascot search results from a tryptic digestion of the K562 proteome. Here we provide the RAW files and search results using MaxQuant, PEAKS DB, ...
ORGANISM(S): Homo sapiens (Human) 
2022-10-26 | PXD034056 | Pride
Rescoring Mass spectrometry 
UnknownEvaluation of CONSRANK-Like Scoring Functions for Rescoring Ensembles of Protein-Protein Docking Poses.
Not available
S-EPMC7641601 | biostudies-literature
UnknownLigand-Enhanced Negative Images Optimized for Docking Rescoring.
Not available
S-EPMC9323918 | biostudies-literature
UnknownRescoring docking hit lists for model cavity sites: predictions and experimental testing.
Not available
S-EPMC2752715 | biostudies-literature
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