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TranscriptomicsTranscriptomic profiling of L-rhamnose utilization in Lmo0753 deletion mutant of Listeria monocytogenes EGDe from human foodborne outbreak associated lineage LII
Among the three major genetic lineages of L. monocytogenes (i.e. LI, LII, and LIII), LI and LII are predominantly associated with foodborne listeriosis outbreaks, whereas LIII is rarely implicated in human infections. In a previous study, we identified a Crp/Fnr family transcription factor lmo0753 t...
ORGANISM(S): Listeria monocytogenes 
2013-07-17 | E-GEOD-47721 | biostudies-arrayexpress
ProteomicsVitamin B12 stimulates 1,2-propanediol utilization in bacterial microcompartments of Listeria monocytogenes making anaerobic growth on rhamnose possible
This study was conducted in order to monitor whether or not Listeria monocytogenes is able to form bacterial microcompartment for rhamnose metabolism by deploying 1,2-propanediol bacterial microcompartment shell proteins and encapsulated enzymes.
ORGANISM(S): Listeria monocytogenes EGD 
2021-06-21 | PXD025734 | Pride
Rhamnose metabolism 1 Bacterial microcompartment 2-propanediol utilization anaerobic growth Listeria monocytogenes 
TranscriptomicsRNA-seq to investigate how small RNA ncS27 in Burkholderia cenocepacia regulates uptake and metabolism of carbon compounds
Burkholderia cenocepacia small RNA ncS27 was identified by transcriptome profiling. To investigate the function of this small RNA, ncS27 was overexpressed and silenced in trans and the effect of this on the transcriptome was studied. To overexpress ncS27 it was cloned into a vector with a rhamnose i...
ORGANISM(S): Burkholderia cenocepacia 
2019-09-13 | E-MTAB-7330 | biostudies-arrayexpress
Unknownl-Rhamnose Metabolism in Clostridium beijerinckii Strain DSM 6423.
Not available
S-EPMC6384099 | biostudies-literature
TranscriptomicsL-rhamnose globally changes the transcriptome of planktonic and biofilm Escherichia coli cells and modulates biofilm growth
L-rhamnose, a naturally abundant sugar, plays diverse biological roles in bacteria, influencing biofilm formation and pathogenesis. This study investigates the global impact of L-rhamnose on the transcriptome and biofilm formation of PHL628 E. coli under various experimental conditions. We compared ...
ORGANISM(S): Escherichia coli 
2024-09-17 | GSE274311 | GEO
TranscriptomicsHydrogenomics of the extremely thermophilic bacterium Caldicellulosiruptor saccharolyticus
Caldicellulosiruptor saccharolyticus is an extremely thermophilic, Gram-positive anaerobe, which ferments cellulose-, hemicellulose- and pectin-containing biomass to acetate, CO2 and hydrogen. Its broad substrate range, high hydrogen-producing capacity, and ability to co-utilize glucose and xylose, ...
ORGANISM(S): Caldicellulosiruptor saccharolyticus 
2008-04-15 | E-GEOD-11153 | biostudies-arrayexpress
MetabolomicsMapping the metabolism of five amino acids in bloodstream form Trypanosoma brucei using U-13C-labelled substrates and LC–MS
The metabolism of the parasite Trypanosoma brucei has been the focus of numerous studies since the 1940s. Recently it was shown, using metabolomics coupled with heavy-atom isotope labelled glucose, that the metabolism of the bloodstream form parasite is more complex than previously thought. The pres...
2019-06-24 | MTBLS624 | MetaboLights
UnknownDiscovery of a rhamnose utilization pathway and rhamnose-inducible promoters in Pichia pastoris.
Not available
S-EPMC4891683 | biostudies-literature
MetabolomicsIntegrative of Single-Cell RNA Sequencing and Metabolomics Decipher the Imbalanced Lipid-Metabolism in Maladaptive Immune Responses during Sepsis
To identify differentially expressed lipid metabolism-related genes (DE-LMRGs) responsible for immune dysfunction in sepsis. Machine learning algorithms were applied for screening hubgenes related to lipid metabolism. CIBERSORT and Single-sample GSEA were employed for assessing the immune cell infil...
2024-09-26 | MTBLS7315 | MetaboLights
UnknownRhamnose biosynthesis pathway supplies precursors for primary and secondary metabolism in Saccharopolyspora spinosa.
Not available
S-EPMC95454 | biostudies-literature
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