Rhee Kirsten K - OmicsDI

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Transcriptomics (3)
Metabolomics (1)

Organisms

Oryza sativa Indica Group (1)
Arabidopsis thaliana (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (3)
MetaboLights (1)

Technology Type

Mass spectrometry assay (1)

Instrument Platform

Gas Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - reverse-phase (1)

Publication Date

2016 (2)
2010 (1)
2026 (1)

CHEBI ID

CHEBI:1127735 (1)
CHEBI:127762 (1)
CHEBI:134216 (1)
CHEBI:1427 (1)
CHEBI:15354 (1)
CHEBI:15355 (1)
CHEBI:15366 (1)
CHEBI:15428 (1)
CHEBI:15603 (1)
CHEBI:15727 (1)
CHEBI:15728 (1)
CHEBI:15729 (1)
CHEBI:15741 (1)
CHEBI:15891 (1)
CHEBI:15908 (1)
CHEBI:15940 (1)
CHEBI:15971 (1)
CHEBI:16020 (1)
CHEBI:16135 (1)
CHEBI:16259 (1)
CHEBI:16347 (1)
CHEBI:16359 (1)
CHEBI:16411 (1)
CHEBI:16414 (1)
CHEBI:16437 (1)
CHEBI:16450 (1)
CHEBI:16467 (1)
CHEBI:16543 (1)
CHEBI:16704 (1)
CHEBI:16709 (1)

Metabolite Name

(+)-S,S-Ethambutol (1)
(+)-Thioctic acid (1)
(+)-yohimbine (1)
(+/-)-Camphoric acid (1)
(+/-)-Hesperetin (1)
(+/-)-Metanephrine (1)
(-)-Oxycodone (1)
(-)-Oxymorphone (1)
(-)-Shikimic acid (1)
(-)-secoisolariciresinol (1)
(12-Methyl-7-tetraphenyl)methyl hydrogen sulfate (1)
(2E)-3-(3,4-Dimethoxyphenyl)acrylic acid (1)
(2E)-3-(4-Hydroxy-3-methoxyphenyl)-N-(4-oxobutyl)acrylamide (1)
(2E)-3-Methyl-4-(sulfooxy)-2-butenoic acid (1)
(2E)-N-[2-(Dihydroxymethyl)-4-hydroxy-5-methoxyphenyl]-3-(4-hydroxy-3-methoxyphenyl)acrylamide (1)
(2R)-1-{[(2-Aminoethoxy)(hydroxy)phosphoryl]oxy}-3-hydroxy-2-propanyl (6Z,9Z,12Z,15Z)-6,9,12,15-octadecatetraenoate (1)
(2R,3R)-2-(3,4-Dihydroxyphenyl)-5,7-dihydroxy-3,4-dihydro-2H-chromen-3-yl 4-hydroxybenzoate (1)
(2R,3S)-3-Hydroxy-8-methyl-8-azabicyclo[3.2.1]octane-2-carboxylic acid (1)
(2S)-3-(1H-Imidazol-4-yl)-2-({[(3S,4S,5R)-2,3,4-trihydroxy-5-(hydroxymethyl)tetrahydro-2-furanyl]methyl}amino)propanoic acid (non-preferred name) (1)
(2S)-6-Amino-2-[(E)-(hydroxymethylene)amino]hexanimidic acid (1)
(2Z)-(2,6-Dihydroxy-3,4-dimethoxycyclohexylidene)acetonitrile (1)
(3S)-3-{[(2E)-3-Carboxy-2-propenoyl]oxy}-4-(trimethylammonio)butanoate (1)
(3S)-3-{[(2E)-4-Carboxy-2-butenoyl]oxy}-4-(trimethylammonio)butanoate (1)
(3S,4S)-7,12-Dimethyl-3,4-dihydro-3,4-tetraphenediol (1)
(4-Ethoxyphenyl)urea (1)
(4E)-2-Amino-3-oxo-4-undecenoic acid (1)
(4R,5S,9S,10R,12S,13S)-1,5,9-Trimethyl-11,14,15,16-tetraoxatetracyclo[10.3.1.0~4,13~.0~8,13~]hexadecan-10-ol (1)
(4S)-4-[(2E,4Z)-2,4-Decadienoyloxy]-4-(trimethylammonio)butanoate (1)
(4beta,8alpha,9R)-6'-Methoxycinchonan-3,9-diol (1)
(5R,6Z,8E,10E,12S,14Z)-5,12,20,20,20-Pentahydroxy-6,8,10,14-icosatetraenoic acid (1)

Study type

RNA-seq of non coding RNA (2)
Transcription profiling by array (1)

Release Date

2016 (2)
2010 (1)

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Study on miRNA expression pattern in Aging Mouse Hippocampal Neurons

Mouse hippocampal microRNA 3 samples

ORGANISM(S): Mus musculus

2016-10-27 | E-GEOD-74796 | biostudies-arrayexpress

Expression data from dark-grown BR double mutant bzr1-1D;bri1-116, single mutant bri1-116, and wildtype

Molecular genetic analyses support a central role of BZR1 in Brassinosteroid (BR) regulation of plant development. The dominant bzr1-1D mutation, which stabilizes the BZR1 protein, completely suppresses the de-etiolated phenotype of the null bri1-116 mutant grown in the dark. Using microarray analys...

ORGANISM(S): Arabidopsis thaliana

2010-12-31 | E-GEOD-25134 | biostudies-arrayexpress

Habitual Coffee Intake Shapes the Gut Microbiome and Modifies Host Physiology and Cognition: double-blind, randomised, parallel design

Coffee influences multiple physiological processes, including gut function, stress, cognition, and the microbiome. However, the mechanisms underlying these effects remain poorly understood. In this study, we examined coffee’s impact on the microbiota–gut–brain axis—a bidirectional communication p...

2026-03-26 | MTBLS13401 | MetaboLights

Genome-wide identification of Drought-responsive Regulatory Coding and Non-coding Transcripts from Oryza sativa L. by deep RNA sequencing

Abiotic environmental stresses cause serious economic losses in agriculture. These stresses include temperature extremes, high salinity and drought. To isolate drought-responsive novel coding and noncoding genes, we used the next generation sequencing method from three rice cultivars (wild type nipp...

ORGANISM(S): Oryza sativa Indica Group

2016-09-06 | E-GEOD-74465 | biostudies-arrayexpress

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