Rhesus - OmicsDI

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Organisms

Macaca mulatta (617)
Homo sapiens (27)
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Mus musculus (22)
gut metagenome (13)
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Macaca fascicularis x Macaca mulatta (3)
macacine betaherpesvirus 3 (3)
Chlorocebus aethiops (3)
Mesocricetus auratus (3)
unidentified (3)
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Macaca nemestrina (2)
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Enterocytozoon bieneusi (1)
Aggregatibacter actinomycetemcomitans RhAA1 (1)

Repository

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Tissue

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Disease

Normal (3)
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Not Available (2)
Simian immunodeficiency virus (1)
Iron deficiency anemia (1)
Zika virus congenital syndrome (1)
Human immunodeficiency virus infectious disease (1)
COVID-19 (1)
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Technology Type

Mass Spectrometry (60)
Shotgun proteomics (39)
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All-ion fragmentation (1)
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Instrument Platform

NextSeq 550 (12)
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None (1)
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- (1)
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LTQ (1)
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Liquid Chromatography MS - positive - HILIC - Exactive (Thermo Scientific) (1)
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Nuclear Magnetic Resonance (NMR) - (1)

Publication Date

2014 (87)
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2011 (55)
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2010 (45)
2018 (41)
2009 (29)
2008 (23)
2007 (13)
2006 (5)
2005 (5)
2004 (2)
2003 (1)

UNIPROT ID/AC

A0A1D5QWS0_MACMU (23)
TPIS_MACMU (23)
I0FUX3_MACMU (23)
H9Z5Y2_MACMU (23)
H9FPI0_MACMU (23)
F6SPY0_MACMU (23)
A0A1D5Q3Q0_MACMU (23)
I0FSL5_MACMU (23)
H9Z0R8_MACMU (23)
F7FLQ1_MACMU (23)
H9G0C4_MACMU (23)
F6QRE8_MACMU (23)
F6RKI4_MACMU (23)
F7HI21_MACMU (23)
F7H6X2_MACMU (23)
F7B8E8_MACMU (23)
I0FJU1_MACMU (23)
F6VER2_MACMU (23)
F6SYK0_MACMU (23)
TBB5_MACMU (23)
F6VWV9_MACMU (23)
H9EMC7_MACMU (23)
F7HFK5_MACMU (23)
F7H2G1_MACMU (23)
H9FTU4_MACMU (23)
F7FRK6_MACMU (23)
I2CYL4_MACMU (23)
G7NLB5_MACMU (23)
H9ES13_MACMU (23)
P05067 (1)

CHEBI ID

CHEBI:16737 (7)
CHEBI:28790 (6)
CHEBI:18095 (5)
CHEBI:73039 (5)
CHEBI:17822 (5)
CHEBI:28867 (5)
CHEBI:15428 (5)
CHEBI:17929 (5)
CHEBI:15727 (5)
CHEBI:70749 (5)
CHEBI:73024 (5)
CHEBI:15891 (5)
CHEBI:16449 (5)
CHEBI:83362 (4)
CHEBI:83361 (4)
CHEBI:83172 (4)
CHEBI:85595 (4)
CHEBI:85601 (4)
CHEBI:85600 (4)
CHEBI:85599 (4)
CHEBI:85626 (4)
CHEBI:85597 (4)
CHEBI:67082 (4)
CHEBI:67084 (4)
CHEBI:67085 (4)
CHEBI:85590 (4)
CHEBI:85588 (4)
CHEBI:85584 (4)
CHEBI:85583 (4)
CHEBI:85582 (4)

Metabolite Name

ADMA (4)
Serotonin (4)
Creatinine (4)
Total DMA (3)
T4-OH-Pro (3)
PEA (3)
Nitro-Tyr (3)
Met-SO (3)
C4-OH-Pro (3)
Alpha-AAA (3)
Ac-Orn (3)
Orn (3)
Cit (3)
DOPA (3)
Val (3)
Tyr (3)
Trp (3)
Thr (3)
Ser (3)
Pro (3)
Phe (3)
Met (3)
Lys (3)
Leu (3)
Ile (3)
His (3)
Gly (3)
Glu (3)
Gln (3)
Asp (3)

First Public Date

2014 (190)
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2024 (125)
2023 (118)
2021 (116)
2020 (105)
2022 (99)
2026 (84)
2017 (73)
2019 (67)
2018 (65)
2013 (57)
2016 (40)
2015 (39)
2012 (3)
2010 (2)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Division of Maternal Fetal Medicine Department of Obstetrics and Gynecology Oregon Health & Science University 3181 SW Sam Jackson Park Road, Mail Code L-458, Portland, OR, 97239, USA (3)
Emory University (3)
Departamento de Ciências Biológicas, Laboratório de Enzimologia e Proteômica, Universidade Federal de Ouro Preto, Brazil (2)
Cancer Proteomics, Department of oncology and pathology, SciLifeLab, Karolinska Institutet (1)
Department of Rehabilitation Medicine, The Second Affiliated Hospital, School of Medicine, South China University of Technology, Guangzhou 510180, China (1)
Changchun Veterinary Research Institute (1)
lushuaiyao's lab, Chinese academic and medical colledge&peking union medical colledge, institute of medical biology (kunming, Yun nan Province) (1)
Research Manager, TNO, Department CBRN protection, The Netherlands (lab head) (lab head) (1)
State Key Laboratory of Genetic Evolution & Animal Models,Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan 650201, China. (1)
Institute of Medical Biology, Chinese Academy of Medical Sciences, Peking Union Medical College, Kunming, China；State Key Laboratory of Medical Molecular Biology, Department of Molecular Biology and Biochemistry, Institute of Basic Medical Sciences, Medical Primate Research Center, Neuroscience Center, Chinese Academy of Medical Sciences, School of Basic Medicine Peking Union Medical College, Beijing, China (1)
Institute of Medical Biology, Chinese Academy of Medical Sciences, Peking Union Medical College, Kunming, China State Key Laboratory of Medical Molecular Biology, Department of Molecular Biology and Biochemistry, Institute of Basic Medical Sciences, Medical Primate Research Center, Neuroscience Center, Chinese Academy of Medical Sciences, School of Basic Medicine Peking Union Medical College, Beijing, China (1)
Department of Human Genetics (1)
University of Catanzaro, Viale Europa, Italy (1)
Division of Microbiology and Immunology, Emory National Primate Research Center, Emory University; Atlanta, Georgia, USA (1)
Centro de Referencia para Lactobacilos (CERELA)-CCT NOA Sur- CONICET (1)
Center for Proteomics and Metabolomics (1)
Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, National Key Laboratory of Medical Molecular Biology & Department of Immunology, No 5 Dongdan Santiao, Dongcheng district, Beijing 100005, China. (1)
Key Laboratory of Animal Production, Product Quality and Security, Ministry of Education, Key Laboratory of Animal Nutrition and Feed Science, Jilin Province, College of Animal Science and Technology, Jilin Agricultural University, Changchun, P. R. China 130118 (1)
Columbia University Irving Medical Center, New York, NY, USA (1)
Department of Biochemistry and Molecular Biology Proteomics Core Facility LSUHSC New Orleans, LA 70112 (1)
Jennifer Van Eyk, PhD, FAHA and FISHR Director, Advanced Clinical Biosystems Research Institute Professor, Heart Institute and Department of Medicine, Director, Basic Science for the Barbra Streisand Women's Heart Center Erika Glazer Endowed Chair in Women Heart Cedars Sinai Medical Center 127 S. San Vicente Blvd. Advanced Health Science Pavilion A9307 Los Angeles, CA 90048 and Professor, Departments of Medicine and Biological Chemistry, Johns Hopkins University (1)
IMM (1)
Jennifer Van Eyk, PhD, FAHA and FISHR Director, Advanced Clinical Biosystems Research Institute Professor, Heart Institute and Department of Medicine, Director, Basic Science for the Barbra Streisand Women's Heart Center Erika Glazer Endowed Chair in Women Heart Cedars Sinai Medical Center 127 S. San Vicente Blvd. Advanced Health Science Pavilion A9307 Los Angeles, CA 90048 and Professor, Departments of Medicine and Biological Chemistry, Johns Hopkins University Baltimore (1)
DZNE Munich Neuroproteomics Feodor-Lynen-Str. 17 81377 München Germany (1)
University of Wrocław, Faculty of Biological Sciences (1)
Dept. Oncology-Pathology, Karolinska Institutet, Stockholm, Sweden (1)
Department of Psychiatry, Yale University School of Medicine, New Haven, CT (1)
One Health Institute, University of California, Davis (1)
Section for Evolutionary Genomics, The Globe Institute, University of Copenhagen, Denmark (1)
The Forsyth Institute (1)

IsPrivate

False (1)

Classification

bacteria (24)
viruses (12)
protozoa (3)
helminths (2)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
Not available (1)

Study type

Transcription profiling by array (181)
RNA-seq of coding RNA (48)
RNA-seq of coding RNA from single cells (15)
Methylation profiling by array (9)
RNA-seq of non coding RNA (9)
ChIP-seq (8)
Methylation profiling by high throughput sequencing (6)
Animal - Single-cell sequencing (5)
Unknown experiment type (4)
Comparative genomic hybridization by array (4)
Other (4)
Transcription profiling by RT-PCR (3)
Animal - High-throughput sequencing (2)
DNA-seq (2)
ChIP-chip by tiling array (1)
One-color microarray (1)
Human - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
Single nucleus RNA sequencing (1)
MicroRNA profiling by array (1)

Release Date

2021 (463)
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2007 (56)
2005 (42)
2004 (38)
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2006 (32)
2002 (27)
2003 (22)
2000 (20)
2001 (17)
1999 (14)
1998 (12)
1997 (1)

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Expression data from 5 rhesus tissues at 3 centers

Novel approaches were used to generate the DNA sequence information for the rhesus GeneChip (2005). The purpose of this experiment was to test its reliability and validity of the rhesus macaque GeneChip across different tissues and centers. Keywords: reliability To test the reliability of the rhesus...

ORGANISM(S): Macaca mulatta

2010-06-11 | E-GEOD-7094 | biostudies-arrayexpress

Generation of Naïve Induced Pluripotent Stem Cells from Rhesus Monkey Fibroblasts

Conventional embryonic stem cells (ESCs) or induced pluripotent stem cells (iPSCs) derived from primates resemble mouse epiblast stem cells, raising an intriguing question regarding whether the naïve pluripotent state resembling mouse embryonic stem cells (mESCs) exists in primates and how to captur...

ORGANISM(S): Macaca mulatta

2014-10-14 | E-GEOD-61420 | biostudies-arrayexpress

Colorectal tissue gene expression in SIV negative and SIV positive Rhesus macaques and sooty mangabeys

In SIV/HIV infection, the gastrointestinal tissue dominates as an important site due to the impact of massive mucosal CD4 depletion and immune activation-induced tissue pathology. Unlike AIDS-susceptible rhesus macaques, natural hosts do not progress to AIDS and resolve immune activation earlier. He...

ORGANISM(S): Macaca mulatta

2011-09-05 | E-GEOD-29980 | biostudies-arrayexpress

Joint analysis of microRNome and 3'-UTRome in the endometrium of rhesus monkey

Here we used rhesus monkey as an animal model and compared the endometrial miRNA expression profiles during early-secretory (day 15, pre-receptive) phase and mid-secretory (day 21, receptive) phase by deep sequencing. In order to facilitate the prediction of their target genes, the 3'-UTRome was als...

ORGANISM(S): Macaca mulatta

2011-07-30 | E-GEOD-31041 | biostudies-arrayexpress

mRNA-Seq and microRNA-Seq whole-transcriptome analysis of rhesus monkey ESC neural differentiation revealed the potential rosette neural stem cell regulators

Rosette neural stem cells (R-NSCs) represent early stage of neural development and possess full neural differentiation and regionalization capacities. R-NSCs are considered as stem cells of neural lineage and have important implications in study of neurogenesis and cell replacement therapy. However,...

ORGANISM(S): Macaca mulatta

2014-07-03 | E-GEOD-53260 | biostudies-arrayexpress

Transcriptional profiling of experimental CD8+ lymphocyte depletion in rhesus macaques infected with SIVmac239

CD8+ T-cells inhibit virus replication in SIV-infected rhesus macaques (RM). However, it is unclear to what extent the viral suppression mediated by CD8+ T-cells reflects direct killing of infected cells as opposed to indirect, non-cytolytic mechanisms. In this study, we used functional genomics to ...

ORGANISM(S): Macaca mulatta

2013-02-08 | E-GEOD-37834 | biostudies-arrayexpress

Focal adhesion and NRF2 pathway regulate left-right asymmetries of rhesus hippocampus aging: relevance to human hippocampus aging and Alzheimer’s disease

Left-right asymmetry is a basic character of aging brain; however, the molecular foundation of the left-right asymmetry remains unclear. The morphology, physiology and behavior of rhesus aging are obviously similar to human aging, but the aging-rate of rhesus is roughly three times as fast as human,...

ORGANISM(S): Macaca mulatta (Rhesus macaque)

2020-01-23 | PXD011398 | Pride

Gene expression analysis of lentivirally-transduced rhesus macaque CD34+ cells long-term following transplant

The occurrence of clonal perturbations and leukemia in patients transplanted with retrovirally-transduced autologous hematopoietic stem and progenitor cells (HSPCs) has stimulated extensive investigation, demonstrating that proviral insertions perturb adjacent proto-oncogene expression. Although enh...

ORGANISM(S): Macaca mulatta

2013-11-05 | E-GEOD-46032 | biostudies-arrayexpress

Ab initio identification of transcription start sites (TSSs) in the Rhesus macaque genome by histone modification and RNA-Seq

We addressed the lack of experimentally supported transcript annotations in the Rhesus macaque genome by ab initio identification of the transcription start sites (TSSs). We took advantage of histone H3 lysine 4 trimethylation (H3K4me3)'s ability to mark TSSs and the recently developed ChIP-Seq and ...

ORGANISM(S): Macaca mulatta

2010-10-18 | E-GEOD-24538 | biostudies-arrayexpress

miRNA expression data from rhesus macaque testes: time course

Small RNA including microRNA (miRNA) and Piwi-interacting RNA (piRNA) play important roles in germline maintenance and maturation in wide variety of species. Relatively little however is known about role played by miRNA in male germline maturation in humans and closely related primate species. Here ...

ORGANISM(S): Macaca mulatta

2013-03-05 | E-GEOD-44820 | biostudies-arrayexpress

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