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GenomicsRetapamulin-assisted Ribo-seq reveals the alternative bacterial proteome
Retapamulin-assisted Ribo-seq reveals the alternative bacterial proteome
PRJNA503765 | ENA
OtherRetapamulin-assisted Ribo-seq reveals the alternative bacterial proteome
Unorthodox rules of extracting genetic information enable proteome expansion without increasing the genome size. The use of alternative translation initiation sites achieves this goal by allowing production of more than one protein from a single gene. Although several such examples have been serendi...
ORGANISM(S): Escherichia coli 
2019-03-04 | GSE122129 | GEO
UnknownWhat can Ribo-seq and proteomics tell us about the non-canonical proteome?
Not available
S-EPMC10245706 | biostudies-literature
UnknownWhat Can Ribo-Seq, Immunopeptidomics, and Proteomics Tell Us About the Noncanonical Proteome?
Not available
S-EPMC10506109 | biostudies-literature
GenomicsSmall proteome of Methanosarcina mazei: Insights from Ribo-seq and peptidomics under different nitrogen conditions
Small proteome of Methanosarcina mazei: Insights from Ribo-seq and peptidomics under different nitrogen conditions
PRJNA1004312 | ENA
TranscriptomicsRibosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity of Mammalian Proteomes
The ability to sequence genomes has far outstripped approaches for deciphering the information they encode. Here we present a suite of techniques, based on ribosome profiling (the deep-sequencing of ribosome-protected mRNA fragments), to provide genome-wide maps of protein synthesis as well as a p...
ORGANISM(S): Mus musculus 
2011-11-03 | E-GEOD-30839 | biostudies-arrayexpress
UnknownUncovering the small proteome of Methanosarcina mazei using Ribo-seq and peptidomics under different nitrogen conditions.
Not available
S-EPMC11456600 | biostudies-literature
ProteomicsExploring the hidden world of Methanosarcina mazei: Unravelling the secrets of its small proteome and its nitrogen-dependent regulation
The mesophilic methanogenic archaeal model organism Methanosarcina mazei strain Gö1, is crucial for climate and environmental research due to its ability to produce methane from H2 plus CO2, acetate, and methylamines. Here, we established the first Ribo-seq protocol for M. mazei strain Gö1 under two...
ORGANISM(S): Methanosarcina mazei Go1 
2024-08-02 | PXD045039 | Pride
Archaea  methanoarchaea  ribosome profiling  ribo-seq  small proteome  sorf  nitrogen  dual function srna 
ProteomicsTissue expression of N-terminal proteoforms.
To evaluate the expression of N-terminal proteoforms (protein isoforms with different N-terminus expressed from the same gene) in healthy human tissues, we re-analyzed public proteomics data of the draft map of the human proteome developed by the Pandey group (PRIDE project PXD000561). Using ionbot ...
ORGANISM(S): Homo sapiens (Human) 
2023-06-12 | PXD039339 | Pride
Proteoforms Healthy tissue Human 
UnknownRetapamulin-Assisted Ribosome Profiling Reveals the Alternative Bacterial Proteome.
Not available
S-EPMC7115971 | biostudies-literature
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