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ProteomicsEvaluation of protein artifacts in tissue cryopreservation
This dataset presents proteomic analyses validating the spatial proteomics technology, NicheProt. NicheProt is a 3D optical microscopy–guided, photobleaching-mediated cell barcoding approach for isolating intact cell types from defined microanatomical niches. Here, we evaluate whether tissue cryopre...
ORGANISM(S): Mus musculus (Mouse) 
2026-03-19 | PXD075811 | Pride
ProteomicsEvaluation of protein artifacts in the NicheProt workflow
This dataset contains proteomic analyses that validate the spatial proteomics technology, NicheProt. NicheProt is a 3D optical microscopy–guided, photobleaching-mediated cell barcoding approach designed to isolate intact cell types from specific microanatomical niches. We evaluate the proteomic prof...
ORGANISM(S): Mus musculus (Mouse) 
2026-03-19 | PXD075769 | Pride
ProteomicsNicheProt: Cell-type-resolved proteomics of mouse spleen tissue compartments
This dataset contains proteomic analyses that validate the spatial proteomic technology, NicheProt, and its application to investigate dendritic cell phenotypes in inflammed mouse spleens. NicheProt is a 3D optical microscopy-guided, photobleaching-mediated cell barcoding approach to isolate intact ...
ORGANISM(S): Mus musculus (Mouse) 
2026-03-19 | PXD075718 | Pride
Microscopy Dendritic cells Inflammation Cell barcoding Spatial proteomics 
TranscriptomicsChip-on-chip analysis of direct Nkx2.1 target genes in proliferating and differentiating epithelium in mouse lung development.
Nkx2.1 is a critical regulator of mammalian lung development. It is expressed in epithelial cells at the initiation of lung organogenesis, becoming progressively restricted during development to bronchiolar and alveolar type II epithelial cells. In humans, it is a common marker of carcinomas of lung...
ORGANISM(S): Mus musculus 
2011-11-01 | E-GEOD-23043 | biostudies-arrayexpress
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