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TranscriptomicsAnaerobic Oxidation of Benzene by the Hyperthermophilic Archaeon Ferroglobus placidus
This SuperSeries is composed of the following subset Series: GSE28549: Anaerobic Oxidation of Benzene by the Hyperthermophilic Archaeon Ferroglobus placidus (Phenol vs. Benzoate) GSE30798: Anaerobic Oxidation of Benzene by the Hyperthermophilic Archaeon Ferroglobus placidus (Benzene vs. Acetate) GSE...
ORGANISM(S): Ferroglobus placidus DSM 10642 
2011-07-19 | E-GEOD-30796 | biostudies-arrayexpress
MetabolomicsThe genome analysis of Tripterygium wilfordii reveals TwCYP712K1 and TwCYP712K2 responsible for oxidation of friedelin in celastrol biosynthesis pathway

Tripterygium wilfordii is a vine used in Traditional Chinese Medicine (TCM) from the family Celastraceae. The active ingredient celastrol is a friedelane-type pentacyclic triterpenoid, with a putative role as an anti-tumor, immunosuppression, and obesity agent. Here we reported a referen...

2021-02-24 | MTBLS1080 | MetaboLights
TranscriptomicsTranscription profiling of S. cerevisiae reveaks increasing nadh oxidation reduces overflow metabolism
When the yeast Saccharomyces cerevisiae is subjected to increasing glycolytic fluxes under aerobic conditions, there is a threshold value of the glucose uptake rate at which the metabolism shifts from being purely respiratory to mixed respiratory and fermentative. This shift is characterized by etha...
ORGANISM(S): Saccharomyces cerevisiae 
2008-06-14 | E-GEOD-6277 | biostudies-arrayexpress
Transcriptomicssmall RNA deep-sequencing with oxidation/β-elimination with age in Drosophila
Drosophila miRNAs show distinct change in isoform distribution pattern with age. Some miRNAs show accumulation of the short isoforms, while other miRNAs show the accumulation of the long isoforms with age. The increase of the long isoforms of some miRNAs reflects increased 2'-O-methylated miRNA isof...
ORGANISM(S): Drosophila melanogaster 
2014-01-01 | E-GEOD-52960 | biostudies-arrayexpress
GenomicsMapping of HOCl-oxidized RNA identifies abasic sites as major damage and oxidation product of oxo8G
RNA oxidation HOCl
PRJEB73991 | ENA
UnknownQuantification of subcellular RNA localization through direct detection of RNA oxidation.
Not available
S-EPMC11879412 | biostudies-literature
GenomicsMapping of HOCl-oxidized RNA identifies abasic sites as major damage and oxidation product of oxo8G
RNA oxidation HOCl Complement
PRJEB84071 | ENA
ProteomicsThe concept of "RNA dependence" - Proteome-wide and quantitative identification of protein interactions dependent on RNA
The general role of RNA in the cell beyond protein biosynthesis is only beginning to emerge with little knowledge about the structural or organizational functions of RNA. In turn, functional non-coding RNAs (ncRNAs) are often identified by their regulation or impact on cellular phenotypes. However, ...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2018-06-13 | MSV000082468 | MassIVE
TranscriptomicsRNA sequencing reveals differential expression of mitochondrial and oxidation reduction genes in the long-lived naked mole-rat when compared to mice.
The goal was to find genes which are differentially expressed between the naked mole-rat (Heterocephalus glaber) and the wild-type mice liver tissue. The genes which are most differentially expressed may provide a clue for the remarkable differences between naked mole-rat and mouse in terms of longe...
ORGANISM(S): Heterocephalus glaber 
2011-11-07 | E-GEOD-30764 | biostudies-arrayexpress
GenomicsQuantification of subcellular RNA localization through direct detection of RNA oxidation
Quantification of subcellular RNA localization through direct detection of RNA oxidation
PRJNA1174121 | ENA
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