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TranscriptomicsComparative analysis of single-cell and spatial Nanopore long-read methods
Alternative splicing significantly contributes to transcriptome complexity and has critical implications for cellular functions. Recent advancements in single-cell isolation and capture techniques have enabled high-throughput quantification of gene expression at single-cell resolution. Long-read seq...
ORGANISM(S): Mus musculus 
2025-08-26 | E-MTAB-15190 | biostudies-arrayexpress
TranscriptomicsDetecting EGFP RNA transcripts by Oxford Nanopore Technology
We performed direct cDNA sequencing in HeLa GFP∆Promoter cells by Oxford Nanopore Technology (ONT) on a MinION device to detect EGFP RNA levels after DSB induction.
ORGANISM(S): Homo sapiens 
2026-05-15 | E-MTAB-16605 | biostudies-arrayexpress
UnknownComputational methods for RNA modification detection from nanopore direct RNA sequencing data.
Not available
S-EPMC8677041 | biostudies-literature
UnknownComparative analysis of 43 distinct RNA modifications by nanopore tRNA sequencing.
Not available
S-EPMC11291079 | biostudies-literature
TranscriptomicsEffective requesting method to detect fusion transcripts in chronic myelomonocytic leukemia RNA-seq
Two sets of 10 samples from patients with CMML were used for this study. The first set (CMML11 to CMML20) includes 10 blood samples supplied by Eric Jourdan (Biological Resource Center CHU-Nimes, France). Peripheral blood mononuclear cells were separated by Ficoll-Hypaque density gradient and preser...
ORGANISM(S): Homo sapiens 
2025-07-22 | E-MTAB-13763 | biostudies-arrayexpress
TranscriptomicsCapTrap-Seq: A platform-agnostic and quantitative approach for high-fidelity full-length RNA transcript sequencing
Here we describe CapTrap-Seq, an experimental workflow designed to address the problem of reduced transcript end detection by long-read RNA sequencing methods, especially at the 5' ends. We apply CapTrap-Seq to profile transcriptomes of the human heart and brain and we compared the obtained results ...
ORGANISM(S): Mus musculus 
2023-12-20 | E-MTAB-13063 | biostudies-arrayexpress
UnknownGeneration of a Transcriptional Radiation Exposure Signature in Human Blood Using Long-Read Nanopore Sequencing.
Not available
S-EPMC7055010 | biostudies-literature
UnknownMapping alternative polyadenylation in human cells using direct RNA sequencing technology.
Not available
S-EPMC10362186 | biostudies-literature
UnknownAnalysis of bacterial transcriptome and epitranscriptome using nanopore direct RNA sequencing.
Not available
S-EPMC11347139 | biostudies-literature
UnknownMasterOfPores: A Workflow for the Analysis of Oxford Nanopore Direct RNA Sequencing Datasets.
Not available
S-EPMC7089958 | biostudies-literature
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