Roberts R R - OmicsDI

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Unknown (4284)
Transcriptomics (172)
Proteomics (57)
Genomics (52)
Metabolomics (17)
Models (10)

Organisms

Homo sapiens (164)
Mus musculus (58)
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Saccharomyces cerevisiae (4)
Drosophila melanogaster (4)
Arabidopsis thaliana (4)
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Salmonella enterica (1)
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Phaeodactylum tricornutum (1)
Fragilariopsis cylindrus (1)
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Oryza sativa Japonica Group (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Panopea abrupta (1)
Candidatus Lokiarchaeum ossiferum (1)
Magallana gigas (1)
Oryza australiensis (1)
Panopea generosa (1)

Organisms

Citrobacter rodentium (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (188)
pride (46)
EGA (34)
MetaboLights (16)
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Tissue

Cell culture (10)
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Disease

Acute leukemia (3)
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Renal Wilms' tumor (1)
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Technology Type

Mass Spectrometry (46)
Shotgun proteomics (23)
Mass spectrometry (16)
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Data-dependent acquisition (5)
Data-independent acquisition (5)
Affinity purification coupled with mass spectrometry proteomics (4)
Top-down proteomics (4)
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SWATH MS (3)
Affymetrix_U133v2, Illumina HiSeq 2000 (1)
Illumina Omni 2.5, Illiumina Omni 2.5 (1)
MSE (1)

Instrument Platform

Illumina NovaSeq 6000 (11)
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Q Exactive (3)
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Illumina (2)
Illumina HiSeq 1500 (2)
In-house built IMS-MS with Agilent TOF MS (2)
API 4000 QTRAP (AB Sciex) (2)
Exactive (Thermo Scientific) (2)
Single cells were captured using the 10x Genomics Chromium Controller. (1)
MACS (1)
ScanArray [PerkinElmer] (1)
Axon- GenePix4000B (1)
418 [Affymetrix] (1)
Illumina HiSeq 2000 (1)
NextSeq 500 (1)
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Q Exactive HF (1)
SolariX (1)
TimsTOF Pro (1)
6550 Q-TOF LC/MS (Agilent) (1)
API 5500 QTRAP (AB Sciex) (1)
Agilent 5975E GC/MSD (Agilent) (1)
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Orbitrap Elite (Thermo Scientific) (1)

Publication Date

2013 (32)
2014 (25)
2016 (24)
2011 (23)
2015 (15)
2025 (14)
2010 (14)
2024 (12)
2020 (12)
2026 (12)
2022 (11)
2021 (11)
2012 (11)
2008 (10)
2023 (9)
2019 (8)
2018 (7)
2009 (6)
2017 (5)
2007 (5)
2004 (2)
2006 (1)
2003 (1)

UNIPROT ID/AC

P00451 (2)
P00734 (2)
P00740 (2)
P00742 (2)
P01008 (2)
P08709 (2)
P10646 (2)
P12259 (2)
P13726 (2)

CHEBI ID

CHEBI:18186 (5)
CHEBI:15356 (4)
CHEBI:15756 (4)
CHEBI:16010 (4)
CHEBI:16113 (4)
CHEBI:16704 (4)
CHEBI:17268 (4)
CHEBI:17385 (4)
CHEBI:17568 (4)
CHEBI:17754 (4)
CHEBI:17822 (4)
CHEBI:17858 (4)
CHEBI:25017 (4)
CHEBI:25094 (4)
CHEBI:27897 (4)
CHEBI:28044 (4)
CHEBI:28300 (4)
CHEBI:28842 (4)
CHEBI:30769 (4)
CHEBI:15428 (3)
CHEBI:15741 (3)
CHEBI:15891 (3)
CHEBI:16199 (3)
CHEBI:16335 (3)
CHEBI:16991 (2)
CHEBI:25000 (2)
CHEBI:35610 (2)
CHEBI:35868 (2)
CHEBI:63632 (2)
CHEBI:70727 (2)

Metabolite Name

Tryptophan (3)
Alanine (2)
Asparagine (2)
Aspartate (2)
Beta-alanine (2)
Butyrylcarnitine (2)
Cholesterol (2)
Citrate (2)
Citrulline (2)
Cysteine (2)
Erythritol (2)
Fructose (2)
Gamma-glutamylleucine (2)
Gamma-glutamylvaline (2)
Glutamine (2)
Glycerol (2)
Glycine (2)
Isobutyrylcarnitine (2)
Isoleucine (2)
Kynurenine (2)
Lactate (2)
Leucine (2)
Lysine (2)
Malate (2)
Maltose (2)
Methionine (2)
Ornithine (2)
Phenylalanine (2)
Phosphate (2)
Proline (2)

First Public Date

2014 (1)
2013 (1)

Modelling Approach

Ordinary differential equation model (4)
Differential equation model (1)

Lab affiliation

Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver V5Z 1L3, Canada. (3)
Charles Perkins Centre, School of Medical Sciences, University of Sydney, Sydney, Australia. (2)
lab (2)
Aalborg university (1)
Archaea Biology and Ecogenomics Unit, University of Vienna, Djerassiplatz 1, 1030 Wien (1)
Center for Alzheimer’s Disease and Related Dementias (CARD) National Institute on Aging (NIA) National Institutes of Health (NIH) (1)
Clinical Chemistry Division, Department of Pathology, The Johns Hopkins University, Baltimore, MD, USA (1)
Department of Archaeology, Max Planck Institute for the Science of Human History, Jena, Germany. (1)
Department of Biochemistry, Emory School of Medicine (1)
Department of Biological Sciences College of Arts and Sciences University of South Carolina (1)
Department of Cell Biology Harvard Medical School (1)
Department of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (1)
Department of Chemistry, Duke University (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic (1)
Department of Pathology, UAMS, Little Rock, AR, USA 2 The Winthrop P. Rockefeller Cancer Institute, UAMS, Little Rock, AR, USA (1)
Dept. Biochemistry, Emory School of Medicine (1)
Florey Institute (1)
Functional Proteomics, ICR (1)
Harry Perkins Institute of Medical Research, QEII Medical Centre, Nedlands, Western Australia 6009, Australia (1)
Head of The Steen-Laboratory, Director of Proteomics, Boston Children's Hospital, Harvard Medical School (1)
Institute for Clinical and Translational Research (ICTR), University of Wisconsin-Madison, Madison, WI, 53705, USA (1)
Institute of Structural and Molecular Biology, Birkbeck College, London WC1E 7HX, UK (1)
Instituto de Biología Funcional y Genómica. CSIC / Salamanca University (1)
Instituto de Medicina Molecular João Lobo Antunes, Faculdade de Medicina, Universidade de Lisboa, Lisbon, Portugal (1)
Lab head, Oxford Parkinson's Disease Centre, Department of Physiology, Anatomy and Genetics, University of Oxford, OX1 3QX, Oxford, UK (1)
MRC Translational Immune Discovery Unit, MRC Weatherall Institute of Molecular Medicine, Radcliffe Department of Medicine, University of Oxford, Oxford, UK (1)
Manchester Cell Matrix Centre | Division of Cancer Sciences | School of Medical Sciences | Faculty of Biology, Medicine and Health The University of Manchester | Michael Smith Building | Oxford Road | Manchester M13 9PT (1)
Metabolic Research Laboratories, Cambridge University (1)
Montreal Neurological Institute, McGill University, Canada (1)
Professor of Pediatrics Children’s Hospital of Philadelphia 3615 Civic Center Blvd Philadelphia, PA 19104 (1)

IsPrivate

False (10)

Classification

bacteria (1)

Study type

Transcription profiling by array (104)
RNA-seq of coding RNA (30)
ChIP-seq (12)
RNA-seq of coding RNA from single cells (8)
Comparative genomic hybridization by array (7)
Unknown experiment type (5)
DNA-seq (3)
Methylation profiling by array (3)
Other (2)
RNA-seq of non coding RNA (2)
Baseline (1)
ChIP-chip by tiling array (1)
Human - Single-cell sequencing (1)
Plant - High-throughput sequencing (1)
ChIP-chip by array (1)
Genotyping by array (1)
Transcription profiling by RT-PCR (1)
Spatial transcriptomics by high-throughput sequencing (1)
Single nucleus RNA sequencing (1)
Genotyping by high throughput sequencing (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (466)
2021 (457)
2023 (438)
2024 (397)
2025 (388)
2020 (367)
2019 (273)
2018 (271)
2016 (219)
2015 (190)
2017 (177)
2014 (161)
2013 (137)
2012 (114)
2011 (104)
2026 (67)
2010 (64)
2009 (42)
2008 (40)
2007 (25)
2006 (21)
2004 (12)
2003 (10)
2005 (10)
2001 (7)
2000 (6)
2002 (3)
1999 (2)
1998 (1)
1997 (1)

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Improved transcription and translation with L-leucine stimulation of mTORC1

Roberts syndrome (RBS) is a human developmental disorder caused by mutations in the cohesin acetyltransferase ESCO2. We previously reported that mTORC1 was inhibited and overall translation was reduced in RBS cells. Treatment of RBS cells with L-leucine partially rescued mTOR function and protein sy...

ORGANISM(S): Homo sapiens

2016-01-15 | E-GEOD-64962 | biostudies-arrayexpress

R-etodolac is a more potent Wnt signaling inhibitor than enantiomer, S-etodolac.

Not available

S-EPMC8861132 | biostudies-literature

Estimating the minimum important difference in the ALSFRS-R-instrument in people living with MND.

Not available

S-EPMC12011019 | biostudies-literature

(R)-PFI-2 is a potent and selective inhibitor of SETD7 methyltransferase activity in cells.

Not available

S-EPMC4156762 | biostudies-literature

The interaction of escitalopram and R-citalopram at the human serotonin transporter investigated in the mouse.

Not available

S-EPMC4346315 | biostudies-literature

Comparison of extravillous trophoblast cells derived from human embryonic stem cells and from first trimester human placentas

The goal of the present study was to characterize HLA-G-positive cells derived from human embryonic stem cells treated with BMP4 for five days and compare them to HLA-G positive cells derived from human first trimester placentas Human embryonic stem cells were cultured with BMP4 in the absence of F...

ORGANISM(S): Homo sapiens

2013-05-02 | E-GEOD-42112 | biostudies-arrayexpress

The influence of chronotype on the body mass index of U.S. college students.

Not available

S-EPMC8906382 | biostudies-literature

Solution structures of the Bacillus cereus metallo-β-lactamase BcII and its complex with the broad spectrum inhibitor R-thiomandelic acid.

Not available

S-EPMC3898119 | biostudies-literature

Achieving end-to-end success in the clinic: Pfizer's learnings on R&D productivity.

Not available

S-EPMC8719639 | biostudies-literature

msgbsR: An R package for analysing methylation-sensitive restriction enzyme sequencing data.