Rodents - OmicsDI

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Unknown (9945)
Transcriptomics (1311)
Genomics (1062)
Proteomics (138)
Metabolomics (15)
Methylation profiling (12)
Other (11)
Genomic (1)
Clinical (1)

Organisms

Mus musculus (672)
Rattus norvegicus (325)
Homo sapiens (223)
Sus scrofa (31)
Macaca mulatta (27)
Bos taurus (18)
Danio rerio (14)
Heterocephalus glaber (13)
Drosophila melanogaster (12)
Ovis aries (11)
Canis lupus familiaris (11)
Oryctolagus cuniculus (10)
Callithrix jacchus (10)
Macaca fascicularis (9)
Gallus gallus (8)
Rattus rattus (6)
Plasmodium berghei (5)
Anopheles gambiae (5)
Papio anubis (3)
Mus musculus domesticus (3)
Plasmodium chabaudi (3)
Oncorhynchus mykiss (3)
Bathyergus suillus (2)
Urocitellus parryii (2)
Bartonella grahamii (2)
Plasmodium chabaudi chabaudi (2)
mouse gut metagenome (2)
Helicobacter pylori (2)
Plasmodium falciparum (2)
Myodes glareolus (1)

Organisms

Mus musculus (202)
Homo sapiens (97)
Rattus norvegicus (85)
Sus scrofa (18)
Danio rerio (10)
Macaca mulatta (9)
gut metagenome (7)
Callithrix jacchus (6)
Canis lupus familiaris (6)
Ovis aries (6)
Oryctolagus cuniculus (4)
Drosophila melanogaster (4)
mouse gut metagenome (4)
Bos taurus (4)
Rodentia (3)
Mesocricetus auratus (3)
Cavia porcellus (3)
Macaca fascicularis (3)
Dipodomys spectabilis (2)
Pelistega ratti (2)
Oesophagostomum dentatum (2)
Heteromys desmarestianus (2)
Chaetodipus baileyi (2)
Rhizomys pruinosus (2)
Holochilus nanus (2)
Trichophyton benhamiae (2)
Rattus rattus (2)
Ictidomys tridecemlineatus (2)
rodent metagenome (2)
Litomosoides sigmodontis (2)

Repository

ENA (985)
biostudies-arrayexpress (894)
geo (518)
pride (85)
MassIVE (23)
iProX (15)
MetaboLights (13)
jPOST (5)
EGA (4)
PanoramaPublic (2)
PAXDB (2)
ExpressionAtlas (1)
dbGaP (1)
EVA (1)
GNPS (1)
MetabolomicsWorkbench (1)

Tissue

Cell culture (18)
Brain (16)
Liver (6)
Urine (6)
Epithelial cell (3)
HUVEC cell (3)
Hepatocyte (3)
Kidney (3)
Neuron (3)
Sperm (3)
Testis (3)
Blood plasma (2)
Blood serum (2)
Endothelium (2)
Heart (2)
Retina (2)
Venom (2)
Liver (1)
Adipose tissue (1)
Blood cell (1)
Body proper (1)
Bone (1)
Brain microvascular endothelial cell (1)
Brown adipocyte (1)
Brown adipose tissue (1)
Carotid artery (1)
Cell suspension culture (1)
Clitoral gland (1)
Embryonic stem cell (1)
HEK-293 cell (1)

Disease

Normal (8)
Disease free (7)
Alzheimer's disease (2)
Non-alcoholic steatohepatitis (2)
Fatty liver disease (1)
Hypotension (1)
Diabetes mellitus type 1 (1)
Hypertension (1)
Insulin resistance (1)
None- acute control (1)
SS2-infected (1)
Diabetes mellitus (1)
Murine hereditary hemochromatosis (1)
None- Acute Control (1)
Colorectal Neoplasms (1)
Alcohol dependence (1)
Alpha 1-antitrypsin deficiency (1)
Bartonellosis (1)
Cardiovascular system disease (1)
Chronic kidney disease (1)
Cowpox (1)
Glaucoma (1)
Heart septal defect (1)
Infertility (1)
Leptospirosis (1)
Type 2 diabetes mellitus (1)
Uveitis (1)

Technology Type

Mass Spectrometry (86)
Shotgun proteomics (49)
Bottom-up proteomics (17)
Mass spectrometry (9)
Gel-based experiment (8)
SWATH MS (5)
Top-down proteomics (5)
Affinity purification coupled with mass spectrometry proteomics (4)
Data-dependent acquisition (4)
Data-independent acquisition (4)
NMR spectroscopy (2)
HDMSE (2)
NMR spectroscopy assay (1)
Mass spectrometry assay (1)
ESI (1)
MSE (1)
SRM/MRM (1)

Instrument Platform

Illumina HiSeq 2500 (20)
Illumina HiSeq 2000 (20)
Illumina NovaSeq 6000 (18)
Illumina HiSeq 4000 (14)
NextSeq 500 (9)
NextSeq 2000 (6)
Illumina MiSeq (5)
Scanning hardware (4)
PromethION (3)
Illumina Genome Analyzer II (3)
Pacbio Revio (2)
The Agilent scanner G2565BA (2)
Agilent�s Microarray Hybridization Oven (2)
NanoDrop ND-1000 Spectrophotometer (NanoDrop Technologies) (2)
Illumina NovaSeq X (2)
NextSeq 550 (2)
Agilent SureScan Microarray Scanner G2600D (1)
ProFlex PCR system (1)
NovaSeq6000 (1)
GeneChip Scanner 2500 (1)
Beckman Coulter MoFlo XDP (1)
Becton Dickinson INFLUX (1)
ViiA 7 Real-Time PCR System (Life Technologies) (1)
Affymetrix GeneChip Scanner 3000 7G (1)
Agilent Microarray Scanner (mod. G2505C) (1)
HP GeneArray [Affymetrix/HP] (1)
ScanArray Express HT [PerkinElmer] (1)
Axon GenePix 4000B scanning hardware (1)
Illumina TruSeq® Stranded mRNA Library Preparation Kit (Illumina) (1)
MinION (1)

Publication Date

2014 (154)
2013 (116)
2023 (101)
2011 (99)
2012 (96)
2015 (93)
2025 (88)
2010 (88)
2026 (83)
2008 (77)
2021 (75)
2007 (62)
2024 (61)
2022 (61)
2009 (60)
2016 (57)
2018 (47)
2019 (40)
2017 (39)
2020 (32)
2006 (15)
2005 (11)
2004 (4)
2003 (1)

UNIPROT ID/AC

5833.MAL13P1.267 (2)
5833.MAL13P1.269 (2)
5833.MAL13P1.325 (2)
5833.MAL13P1.334 (2)
5833.MAL7P1.78 (2)
5833.MAL8P1.208 (2)
5833.MAL8P1.320 (2)
5833.PF11_0033 (2)
5833.PF11_0263 (2)
5833.PF11_0512 (2)
5833.PF13_0305 (2)
5833.PF13_0321 (2)
5833.PF14_0001 (2)
5833.PF14_0009 (2)
5833.PF14_0173 (2)
5833.PF14_0734 (2)
5833.PF14_0751 (2)
5833.PF14_0756 (2)
5833.PF14_0759 (2)
5833.PFA0105w (2)
5833.PFA0120c (2)
5833.PFA0705c (2)
5833.PFB0050c (2)
5833.PFB0280w (2)
5833.PFB0925w (2)
5833.PFB0946c (2)
5833.PFC1011c (2)
5833.PFC1075w (2)
5833.PFD0075w (2)
5833.PFD0100c (2)

CHEBI ID

CHEBI:15354 (3)
CHEBI:91312 (2)
CHEBI:85870 (2)
CHEBI:131991 (2)
CHEBI:64591 (2)
CHEBI:64592 (2)
CHEBI:85742 (2)
CHEBI:84659 (2)
CHEBI:85743 (2)
CHEBI:84660 (2)
CHEBI:84661 (2)
CHEBI:85736 (2)
CHEBI:90302 (2)
CHEBI:84662 (2)
CHEBI:84665 (2)
CHEBI:85874 (2)
CHEBI:85726 (2)
CHEBI:15688 (2)
CHEBI:85741 (2)
CHEBI:85729 (2)
CHEBI:85725 (2)
CHEBI:67057 (2)
CHEBI:16354 (2)
CHEBI:15366 (2)
CHEBI:15891 (2)
CHEBI:18050 (2)
CHEBI:17268 (2)
CHEBI:16977 (2)
CHEBI:64593 (2)
CHEBI:16737 (2)

Metabolite Name

Acetoin (3)
Tributyl phosphate (2)
Acetoacetic acid (2)
Phenylacetaldehyde (2)
Heptanoic acid (2)
Anethole (2)
3-Methyl-2-oxovaleric acid (2)
Betaine (2)
Saccharopine (2)
2-Hydroxybutyric acid (2)
Propionic acid (2)
Isobutyric acid (2)
Hexanoic acid (2)
Acetic acid (2)
Benzyl alcohol (2)
Methylguanidine (2)
L-Threonine (2)
Glucose 1-phosphate (2)
L-Histidine (2)
Acetylcholine (2)
Choline (2)
2-Hydroxyvaleric acid (2)
Niacinamide (2)
Glucose 6-phosphate (2)
Citric acid (2)
L-Tryptophan (2)
L-Glutamine (2)
Xanthine (2)
Sucrose (2)
Creatinine (2)

First Public Date

2014 (130)
2025 (120)
2024 (112)
2023 (111)
2026 (88)
2021 (84)
2022 (65)
2019 (50)
2020 (47)
2017 (45)
2013 (45)
2015 (37)
2018 (35)
2016 (13)
2010 (2)
2012 (1)

Classification

bacteria (22)
viruses (21)
fungi (6)
protozoa (5)

Study status

Recruiting (1)

Study type

Transcription profiling by array (646)
RNA-seq of coding RNA (97)
ChIP-seq (23)
Other (12)
RNA-seq of non coding RNA (12)
Unknown experiment type (11)
DNA-seq (11)
RNA-seq of coding RNA from single cells (11)
Comparative genomic hybridization by array (9)
Transcription profiling by RT-PCR (8)
Animal - High-throughput sequencing (6)
Methylation profiling by array (6)
Cell line - High-throughput sequencing (5)
Transcription profiling by SAGE (4)
ChIP-chip by array (4)
Proteomic profiling by array (4)
RNA-seq of total RNA (4)
Animal - One-color microarray (3)
ChIP-chip by tiling array (3)
Genotyping by array (3)
Trajectory (2)
Cell line - One-color microarray (1)
High-throughput sequencing (1)
RNAi profiling by array (1)
Antigen profiling (1)
ATAC-seq (1)
Hi-C (1)
MicroRNA profiling by array (1)
Genotyping by high throughput sequencing (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (1001)
2021 (923)
2023 (891)
2020 (839)
2024 (748)
2025 (720)
2018 (688)
2019 (673)
2017 (623)
2016 (577)
2015 (553)
2014 (534)
2013 (382)
2012 (331)
2011 (289)
2010 (283)
2009 (187)
2008 (170)
2007 (117)
2026 (95)
2006 (67)
2005 (46)
2004 (36)
2003 (18)
2001 (14)
2000 (12)
2002 (9)
1999 (6)
1998 (5)
1997 (2)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (9)
Institute for Vascular Signalling, Centre for Molecular Medicine, Goethe University, Frankfurt am Main, Germany. (5)
Leibniz Institute on Aging - Fritz Lipmann Institute (FLI) Beutenbergstraße 11 07745 Jena, Germany (3)
Department of Chemistry, Johns Hopkins University, Baltimore, Maryland, United States (2)
Departments of Biochemistry and Neurology Emory University School of Medicine (2)
Howard Hughes Medical Institute Beth Israel Deaconess Medical Center Harvard Medical School (2)
State Key Laboratory for Innovation and Transformation of Luobing Theory; Key Laboratory of Cardiovascular Remodeling and Function Research, Chinese Ministry of Education, Chinese National Health Commission and Chinese Academy of Medical Sciences; Department of Cardiology, Qilu Hospital of Shandong University, Jinan, China (2)
1 Institut de Pharmacologie et de Biologie Structurale (IPBS), Université de Toulouse, CNRS, Toulouse, France. Equipe labellisée par la Ligue contre le cancer 2 Infrastructure Nationale de Protéomique, ProFI, FR 2048, Toulouse, France. (1)
Associate Professor Department of Physiology Medical College of Wisconsin (1)
CNRS, INSERM, CHU Lille, Institut Pasteur de Lille, U1019, UMR 8204, CIIL – Centre d’Infection et d’Immunité de Lille, Univ. Lille, 59000 Lille, France (1)
Center for Neuroscience and Cell Biology of theUniversity of Coimbra (1)
Centre for Proteome Research Institute of Intergrative Biology University of Liverpool (1)
Centre for Proteome Research, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, L69 7ZB, UK (1)
Centre for Proteome Research, University of Liverpool (1)
Cold Spring Harbor Laboratory ( lab head ) (1)
Department of Biological Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139, USA Singapore-MIT Alliance for Research and Technology, Antimicrobial Resistance Interdisciplinary Research Group, Campus for Research Excellence and Technological Enterprise, Singapore 138602, Singapore (1)
Department of Biology, Faculty of Chemistry, National Autonomous University of Mexico (UNAM), (1)
Department of Cell Physiology and Metabolism, Faculty of medicine, University of Geneva (1)
Department of Chemical Sciences of the University of Napoli Federico II (1)
Department of Developmental Pathology and Department of Molecular Diagnostics Institute of Pathology Bonn Medical School Venusberg-Campus 1, Building 62 53127 Bonn (1)
Department of Environmental, Biological and Pharmaceutical Sciences and Technologies, University of Campania "Luigi Vanvitelli", Caserta, Italy (1)
Department of Experimental Pharmacology and 35 Toxicology, University Medical Center Hamburg-Eppendorf, Hamburg, Germany, 36 Martinistrasse 52, 20246 Hamburg, Germany (1)
Department of Internal Medicine, Division of Endocrinology and Metabolism, Carver College of Medicine, University of Iowa, Iowa City, Iowa, 52242 USA (1)
Department of Medicine III and IZKF, University Hospital Aachen, Aachen, Germany (1)
Department of Molecular & Cellular Physiology Stanford University School of Medicine (1)
Department of Molecular Physiology and Biophysics, University of Iowa, Iowa city, IA (1)
Department of Molecular and Cellular Neurobiology, Center for Neurogenomics and Cognitive Research, Amsterdam Neuroscience, Vrije Universiteit Amsterdam, The Netherlands (1)
Department of Ophthalmology and Visual Sciences University of Maryland at Baltimore School of Medicine (1)
Department of Pharmacology, Institute of Neuroscience and Physiology, The Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden (1)
Department of Physiology and Pharmacology, Karolinska Institutet, Stockholm, Sweden The Structural Genomics Consortium (SGC), Karolinska Institutet, Stockholm, Sweden (1)

Location

Netherlands (1)

Keyword

Muscle strength (1)
Cardiorespiratory fitness (1)
Chemotherapy dose modification (1)
Progression free survival (1)
Bayesian adaptive trial (1)
Exercise (1)

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Aberrant gut microbiota alters host metabolome and impacts renal failure in humans and rodents

OBJECTIVE: Patients with renal failure suffer from symptoms caused by uraemic toxins, possibly of gut microbial origin, as deduced from studies in animals. The aim of the study is to characterise relationships between the intestinal microbiome composition, uraemic toxins and rena...

2020-10-20 | MTBLS700 | MetaboLights

D-Allulose effects on hepatic metabolomics profile in rodents

Not available

ORGANISM(S): Rattus norvegicus

ST001668 | MetabolomicsWorkbench

Molecular Signatures of Neurogenesis in the Hippocampal Subgranular Zone of Rodents

We sought to find molecular signatures of the SGZ cell types, and to characterize the molecular pathways and transcription factor cascades that define the neurogenic niche. We used laser capture microdissection and DNA microarrays to profile gene expression in the inner (SGZ) and outer portions of t...

ORGANISM(S): Mus musculus

2013-12-04 | E-GEOD-39697 | biostudies-arrayexpress

Rodents

Virome composition in Rodents

PRJNA1161815 | ENA

Rodents

Rodents associated with apple orchards in Kashmir, India

PRJNA1329033 | ENA

A comprehensive portrait of tissue-, age- and sex-specific DNA modifications in rodents and humans

DNA damage causes genomic instability underlying many diseases, with traditional analytical approaches providing minimal insight into the spectrum of DNA lesions in vivo. Here we used untargeted chromatography-coupled tandem mass spectrometry-based adductomics (LC-MS/MS) to define the landscape of D...

ORGANISM(S): Homo sapiens (Human) Rattus norvegicus (Rat)

2023-09-12 | PXD045311 | Pride