Rodrigues I I - OmicsDI

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Unknown (2167)
Proteomics (60)
Transcriptomics (44)
Metabolomics (5)
Genomics (3)
Models (1)

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Homo sapiens (39)
Mus musculus (12)
Saccharomyces cerevisiae (4)
Oryza sativa (3)
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Caenorhabditis elegans (2)
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cellular organisms (1)
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Repository

pride (55)
biostudies-arrayexpress (46)
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Tissue

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Disease

Cholangiocarcinoma (5)
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Plasmodium berghei-infected cells (1)
Breast adenocarcinoma (1)
Acute leukemia (1)
Anal canal squamous cell carcinoma (1)
Childhood extraosseous osteosarcoma (1)
Chronic bronchitis (1)
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Diabetes (1)
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Histoplasmosis (1)
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Malignant mesothelioma (1)
Melanoma (1)
Mucolipidosis II alpha/beta (1)
Neuroblastoma (1)
Oral squamous cell carcinoma (1)
Pancreatic cancer (1)
Peripheral primitive neuroectodermal tumor (1)
Plasmodium falciparum malaria (1)
Plasmodium vivax malaria (1)
Prostate adenocarcinoma (1)

Technology Type

Mass Spectrometry (55)
Shotgun proteomics (30)
Bottom-up proteomics (15)
SWATH MS (5)
Mass spectrometry (4)
Data-dependent acquisition (4)
All-ion fragmentation (3)
HDMSE (3)
Affinity purification coupled with mass spectrometry proteomics (2)
Data-independent acquisition (2)
Gel-based experiment (1)
Immunopeptidomics (1)
Top-down proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (4)
LTQ Orbitrap Velos (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
Scanning hardware (1)
Illumina HiSeq 1500 (1)
Illumina HiSeq 2000 (1)
7890A GC coupled to a 5975C inert XL MSD, with a 7683 series injector (G2614A) (1)
MaXis (1)
Orbitrap Exploris 480 (1)
Q Exactive (1)
Liquid Chromatography MS (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)

Publication Date

2022 (13)
2023 (11)
2026 (11)
2015 (9)
2025 (9)
2024 (8)
2021 (7)
2010 (7)
2011 (6)
2013 (5)
2018 (4)
2017 (4)
2012 (4)
2014 (3)
2019 (3)
2020 (3)
2016 (2)
2008 (2)
2007 (1)

CHEBI ID

CHEBI:116314 (2)
CHEBI:41321 (2)
CHEBI:14261 (1)
CHEBI:14314 (1)
CHEBI:15351 (1)
CHEBI:15531 (1)
CHEBI:15721 (1)
CHEBI:16077 (1)
CHEBI:17138 (1)
CHEBI:17234 (1)
CHEBI:17620 (1)
CHEBI:17794 (1)
CHEBI:24344 (1)
CHEBI:32816 (1)
CHEBI:3962 (1)
CHEBI:40595 (1)
CHEBI:44897 (1)
CHEBI:48153 (1)
CHEBI:48928 (1)
CHEBI:57642 (1)
CHEBI:57737 (1)
CHEBI:58121 (1)
CHEBI:58273 (1)
CHEBI:71236 (1)
CHEBI:78697 (1)
CHEBI:10280 (1)
CHEBI:109455 (1)
CHEBI:131660 (1)
CHEBI:131692 (1)
CHEBI:131977 (1)

Metabolite Name

(-)-pinellic acid (1)
(.+/-.)-Tartaric acid (1)
(1S,3R,5Z,7E,22E)-9,10-Secoergosta-5,7,10,22-tetraene-1,3,25,28-tetrol (1)
(20Z)-17-Oxo-20-hexacosenoic acid (1)
(2S)-1-Hydroxy-3-(pentadecanoyloxy)-2-propanyl (9Z)-9-hexadecenoate (1)
(2S)-3-Hydroxy-2-(octanoyloxy)propyl decanoate (1)
(2xi)-D-gluco-heptonic acid (1)
(3beta,5xi,9xi)-Urs-12-en-3-yl palmitate (1)
(3r,4s)-Tofacitinib (1)
(5xi)-11,12-Dihydroxyabieta-8(14),9(11),12-trien-20-oic acid (1)
.alpha.-Glucoheptitol (1)
1,1'-[1,11-Undecanediylbis(oxy)]dibenzene (1)
1,2-dioleoyl-sn-glycero-3-phospho-(1'-sn-glycerol) (1)
1,2-dioleoyl-sn-glycero-3-phospho-N,N-dimethylethanolamine (1)
1,3-Dihydroxy-2-propanyl (15Z)-15-tetracosenoate (1)
1,3-Dihydroxy-2-propanyl tetracosanoate (1)
1,5-di-O-E-caffeoylquinic acid (1)
1-(9Z-octadecenoyl)-sn-glycero-3-phospho-(1'-sn-glycerol) (1)
1-(Decanoyloxy)-3-(octanoyloxy)-2-propanyl tridecanoate (1)
1-Eicosadienoyl-2-docosahexaenoyl-sn-glycero-3-phosphoethanolamine (1)
1-Palmitoyl-2-hydroxy-sn-glycero-3-PE (1)
1-arachidoyl-2-arachidonoyl-sn-glycero-3-phosphate (1)
1-heptadecanoyl-sn-glycero-3-phosphocholine (1)
1-hexadecanoyl-2-(13Z-docosenoyl)-sn-glycero-3-phosphoethanolamine (1)
1-lauroyl-sn-glycerol 3-phosphate (1)
1-myristoyl-2-oleoyl-sn-glycero-3-phosphoethanolamine (1)
1-oleoyl-2-arachidonoyl-sn-glycero-3-phospho-L-serine (1)
1-oleoyl-sn-glycero-3-phosphoethanolamine (1)
1-palmitoyl-2-arachidonoyl-sn-glycero-3-phospho-(1'-sn-glycerol) (1)
1-stearoyl-2-(8Z,11Z,14Z-icosatrienoyl)-sn-glycero-3-phosphoserine (1)

IsPrivate

False (1)

First Public Date

2026 (1)

Modelling Approach

Ordinary differential equation model (1)

Modification

0.984 (1)
15.99491 (1)
43.00581 (1)
57.02146 (1)

Study type

Transcription profiling by array (30)
RNA-seq of coding RNA (9)
Methylation profiling by high throughput sequencing (2)
RNA-seq of non coding RNA (2)
Transcription profiling by SAGE (1)
Comparative genomic hybridization by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (313)
2022 (301)
2023 (280)
2024 (262)
2021 (250)
2020 (175)
2018 (124)
2019 (118)
2017 (89)
2016 (57)
2026 (52)
2015 (48)
2014 (30)
2012 (29)
2013 (26)
2011 (23)
2010 (13)
2008 (5)
2009 (5)
2007 (4)
2006 (2)
2005 (2)
2003 (2)
2000 (2)
2001 (1)

Lab affiliation

CEA-Marcoule, ProGenoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Ceze, France (4)
AnimalS health Territories Risks Ecosystems (ASTRE Unit CIRAD), France (1)
Biologie des interactions hôte-parasite Institut Pasteur (1)
Brazilian Biosciences National Laboratory (LNBio), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, Sao Paulo, Brazil. (1)
CIC bioGUNE Proteomics Platform, Bizkaia Tech. Park. Build 800 (1)
Cell Cycle Group Cancer Epigenetics and Biology Program (PEBC) Bellvitge Isntitute of Biomedical Research (IDIBELL) Hospital Duran i Reynals Avinguda de la Gran Via de l'Hospitalet, 199-203 08908 - L'Hospitalet de Llobregat (1)
Center for Neuroscience and Cell Biology (1)
Center for Neuroscience and Cell Biology of theUniversity of Coimbra (1)
Centro de Pesquisa em Virologia (CPV) and Departamento de Biologia Celular e Molecular, Faculdade de Medicina de Ribeirão Preto, Universidade de São Paulo, Ribeirão Preto, SP, Brazil (1)
Computational and Experimental Biology Group, CEDOC, Chronic Diseases Research Centre, NOVA Medical School, Faculdade de Ciencias Medicas, Universidade NOVA de Lisboa, Campo dos Martires da Patria, 130, 1169-056 Lisboa, Portugal (1)
Departament of Physiology and Biophysics, Federal University of Minas Gerais (1)
Department of Biochemistry & Pharmacology, Bio21 Institute, University of Melbourne (1)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (1)
Department of Biomedicine, Faculty of Medicine, University of Porto, 4200-319 Porto, Portugal. (1)
Department of Microbiology, Immunology, and Parasitology, Discipline of Cellular Biology, Federal University of Sao Paulo (UNIFESP), Sao Paulo, Brazil (1)
Department of Physiology and Biophysics, Institute of Biological Sciences, Federal University of Minas Gerais, Belo Horizonte-MG, Brazil. (1)
Department of Physiology and Medical Physics, Royal College of Surgeons in Ireland, Dublin, Ireland. (1)
Division of Infectious Diseases, Department of Medicine, Albert Einstein College of Medicine, Bronx, New York 10461, USA (1)
Evolutionary and translational venomics Lab, Instituto de Biomedicina de Valencia, CSIC (1)
Federal University of Minas Gerais (1)
IHU Mediterranee infection (1)
INSERM U1068/UMR7258 CNRS - Cancer Research Center of Marseille "Pancreatic Cancer" Team Group leader of the "Microenvironment and inter-cellular dialogue" Parc Scientifique de Luminy, 163 avenue de Luminy, case 915, 13288 Marseille Cedex 9 FRANCE (1)
INSERM U1068/UMR7258 CNRS - Cancer Research Center of Marseille "Pancreatic Cancer" Team Group leader of the "Microenvironment and inter-cellular dialogue" Parc Scientifique de Luminy, 163 avenue de Luminy, case 915, 13288 Marseille Cedex 9 France (1)
Institute of Science and Technology Austria, Am Campus 1, 3400 Klosterneuburg, Austria (1)
Institution: Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF) Department/Laboratory: Laboratório de Biotecnologia Centro de Biociências e Biotecnologia (1)
Instituto Carlos Chagas, Fundação Oswaldo Cruz (Fiocruz), Curitiba, Brazil (1)
Instituto Carlos Chagas, Fundação Oswaldo Cruz (Fiocruz), Curitiba, Brazil, (1)
Instituto Carlos Chagas, Fundação Oswaldo Cruz (Fiocruz), Curitiba, Brazil. (1)
Instituto de Bioquímica Médica Leopoldo de Meis, Laboratório de Hemostase e Venenos, Universidade Federal do Rio de Janeiro (UFRJ), Brazil. (1)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (1)

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xref:EuropePMC:PMC12913226 (1)

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Gene expression data from acetaminophen-induced toxicity in human hepatic in vitro systems and clinical liver samples

In this study we conducted transcriptomics analyses of: (i) liver samples from patients suffering from acetaminophen-induced acute liver failure (n=3) and from healthy livers (n=2) and (ii) hepatic cell systems exposed to acetaminophen, including their respective vehicle controls. The investigated i...

ORGANISM(S): Homo sapiens

2015-11-04 | E-GEOD-74000 | biostudies-arrayexpress

An Aminopyrimidone and Aminoimidazoles Alkaloids from the Rodrigues Calcareous Marine Sponge Ernsta naturalis.

Not available

S-EPMC9604632 | biostudies-literature

Chronic stress alters the E/I balance of pyramidal neurons in the infralimbic and Prelimbic cortices

The medial prefrontal cortex (mPFC) is a key brain region involved in controlling working memory, executive function, and self-regulatory behaviours, and its malfunction is a hallmark of several neuropsychiatric disorders such as schizophrenia, depression, and post-traumatic stress disorder. One of ...

ORGANISM(S): Mus musculus (Mouse)

2024-10-17 | PXD047291 | Pride

Taxonomy and systematics of the fungus-growing ant associate Escovopsis (Hypocreaceae).

Not available

S-EPMC10825746 | biostudies-literature

New insights into the diversity of cryptobenthic Cirripectes blennies in the Mascarene Archipelago sampled using Autonomous Reef Monitoring Structures (ARMS).

Not available

S-EPMC10019914 | biostudies-literature

Two new species of Athenaea Sendtn. (Solanaceae) from the Atlantic forests of south-eastern Brazil.

Not available

S-EPMC8149380 | biostudies-literature

Gene expression data from acetaminophen-induced toxicity in human hepatic in vitro systems and clinical liver samples.

Not available

S-EPMC5063792 | biostudies-literature

Dataset on functional and chemical properties of the medicinal halophyte Polygonum maritimum L. under greenhouse cultivation.

Not available

S-EPMC6727193 | biostudies-literature

Pinus pinaster Early Hormonal Defence Responses to Pinewood Nematode (Bursaphelenchus xylophilus) Infection.

Not available

S-EPMC8068127 | biostudies-literature

Comparison of neonatal and adult rat ventricular cardiomyocytes

We addressed the question of which protein kinases are expressed in cardiomyocytes. We assessed the changes during postnatal development, comparing profiles in rat neonatal ventricular cardiomyocytes (NVMs) with adult ventricular cardiomyocytes (AVMs). Neonatal and adult rat ventricular cardiomyocyt...

ORGANISM(S): Rattus norvegicus

2015-01-01 | E-MTAB-2832 | biostudies-arrayexpress

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