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TranscriptomicsTranscriptional reprogramming by root knot and migratory nematode infection in rice
In this study a comparison was made between the local transcriptional changes at two time points upon root knot (Meloidogyne graminicola) and migratory nematode (Hirschmanniella oryzae) infection in rice. Using mRNA-Seq we have characterized specific and general responses of the root challenged with...
ORGANISM(S): Oryza sativa Japonica Group 
2013-01-10 | E-GEOD-35843 | biostudies-arrayexpress
ProteomicsIdentification of potential Rsf1 promoter-interacting proteins in rice (Oryza sativa Nipponbare) roots during nematode infection
We performed DNA-pull down experiments using biotin-labeled and unlabeled promoter sequences of Rsf1, a susceptibility factor in rice against root-knot nematode infection, to capture interacting nuclear proteins from rice roots at different time points post-infection (0, 1, and 3 days). Captured pro...
ORGANISM(S): Oryza sativa (Rice) 
2025-12-07 | PXD071646 | Pride
Lc-ms/ms Nuclear proteins. Promoter pull-down Root-knot nematode Dna-protein interaction Rice 
TranscriptomicsTranscriptome profiling of roots from Oryza sativa in response to root-knot nematode (RKN, Meloidogyne graminicola) infection
Transcriptome profiling of roots from Oryza sativa ssp. japonica cv. Nipponbare and Nipponbare mutant in response to root-knot nematode (RKN, Meloidogyne graminicola) infection. The experiment aimed to identify differentially expressed genes during early nematode establishment. Roots were collected ...
ORGANISM(S): Oryza sativa Japonica Group 
2026-05-29 | E-MTAB-15844 | biostudies-arrayexpress
ProteomicsLC-MSMS analysis of Meloidogyne incognita feeding tube enriched samples isolated from tobacco and tomato giant cell cytoplasm
Here we developed a protocol for the isolation and semi-purification of root-knot nematode feeding tubes from giant-cell cytoplasm of several host plant species. Our methods allowed for the isolation and solubilization of sufficient quantities of enriched feeding tubes enabling a comparative proteom...
ORGANISM(S): Meloidogyne incognita Nicotiana tabacum (Common tobacco) Solanum lycopersicum 
2026-02-16 | PXD065741 | Pride
Tobacco Tomato Meloidogyne incognita Root-knot nematode Giant cell Feeding tube 
ProteomicsProteomic profiling of rice (Oryza sativa Nipponbare) roots during compatible interaction with the root-knot nematode Meloidogyne graminicola
This study employed label-free quantitative mass spectrometry to investigate the proteomic changes in roots of the susceptible rice cultivar Nipponbare during a compatible interaction with the root-knot nematode Meloidogyne graminicola. Root samples were collected at four time points: before inocula...
ORGANISM(S): Oryza sativa (Rice) 
2025-12-08 | PXD071707 | Pride
Meloidogyne graminicola Plant-pathogen interaction. Label-free quantitative proteomics Compatible interaction Nipponbare Root proteome Rice 
UnknownCharacterization of Root-Knot Nematode Resistance in Medicago truncatula.
Not available
S-EPMC2586522 | biostudies-literature
TranscriptomicsTranscription profiling of host response to root-knot nematode infection in Arabidopsis
During a compatible interaction, root-knot nematodes (Meloidogyne spp.) induce the redifferentiation of root cells into multinucleate nematode feeding cells — giant cells. These hypertrophied cells result from repeated nuclear divisions without cytokinesis, are metabolically active and present featu...
ORGANISM(S): Arabidopsis thaliana 
2005-01-11 | E-MEXP-233 | biostudies-arrayexpress
TranscriptomicsBelow ground attack by root knot nematode Meloidogyne graminicola predisposes rice to blast disease
Magnaporthe oryzae (rice blast) and the root-knot nematode Meloidogyne graminicola are causing two of the most important pathogenic diseases jeopardizing rice production. Here, we show that root-knot nematode infestation on rice roots leads to important above-ground changes in plant immunity gene ex...
ORGANISM(S): Oryza sativa Japonica Group 
2018-11-02 | GSE89449 | GEO
TranscriptomicsTranscriptional reprogramming by root knot and migratory nematode infection in rice
In this study a comparison was made between the local transcriptional changes at two time points upon root knot (Meloidogyne graminicola) and migratory nematode (Hirschmanniella oryzae) infection in rice. Using mRNA-Seq we have characterized specific and general responses of the root challenged with...
ORGANISM(S): Oryza sativa Japonica Group 
2013-01-10 | GSE35843 | GEO
TranscriptomicsTranscriptional analysis of giant cells induced by root knot nematodes in rice
Biotrophic plant pathogens have evolved sophisticated strategies to manipulate their host. They derive all of their nutrients from living plant tissues, by making intimate contact with their host while avoiding a resistance response. Rice is one of the most important crop plants worldwide and an exc...
ORGANISM(S): Oryza sativa Japonica Group 
2013-08-07 | E-GEOD-43577 | biostudies-arrayexpress
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