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ProteomicsAutoreactive T Cells Recognize Unique MBP Peptides Naturally Presented by EBV-Infected B Cells and Multiple Sclerosis Brain Tissue
Epstein-Barr virus (EBV) is involved in causing and probably also perpetuating multiple sclerosis (MS). Among several mechanisms, how EBV may contribute, are transcriptome alterations including changes of antigen processing and preferential presentation of both viral and self-antigens. Here, we foun...
ORGANISM(S): Homo sapiens (Human) 
2026-06-19 | PXD068927 | Pride
Mbp Ebv-infected b-cells Human Lc-ms/ms 
ProteomicsDifferential response to herbivory by Helicoverpa armigera in Cajanus cajan and Cajanus platycarpus
In synchrony with deciphering the transcriptomic basis of pod borer resistance in C. platycarpus, the aim of the present work was to corroborate and understand how the leaf proteome in these two contrasting cajanus species explain the differential responses to herbivory. To the best of our knowledge...
ORGANISM(S): Cajanus cajan 
2020-07-27 | PXD017679 | Pride
Cajanus cajan Response to pest attack Lc-msms 
ProteomicsGrape ASR-silencing sways nuclear proteome and histone marks
The biological roles of ASRs (Abscisic acid, Stress, Ripening proteins) involved in certain crucial switches of plant development (grain and pollen germination, senescence, fruit ripening), and responses to environmental cues (drought, salinity, cold, nutrient depletion, fungus infection, heavy m...
ORGANISM(S): Vitis vinifera (Grape) 
2022-02-22 | PXD004988 | Pride
Grape Itraq Lc-ms/ms 
ProteomicsEngineered Peptide Barcodes for Binding Protein Generation
Binding protein generation relies on laborious screening cascades that process candidate molecules individually. To break with this paradigm, we developed NestLink, a binder selection and identification technology able to biophysically characterize thousands of library members at once without handli...
ORGANISM(S): synthetic construct (code 12) 
2019-01-15 | PXD009301 | Pride
Peptide barcode 
ProteomicsProtein atlas of four larval stages of Maruca vitrata
The present work is the pioneering report depicting the total proteomic atlas of four major developmental stages (third, fourth, fifth instar and pupa) of M. vitrata by LC-MS/MS analyses.
ORGANISM(S): Maruca vitrata 
2023-11-20 | PXD043092 | Pride
Lc-ms/ms Hilic Larval stages 
ProteomicsProtein profiling of four larval stages of Maruca vitrata
In this study, we sought to identify functionally important differentially expressed proteins (DEPs) in the four life stages of M. vitrata. That data can provide an insight into the biological processes involved in insect metamorphosis.
ORGANISM(S): Maruca vitrata 
2023-11-20 | PXD042245 | Pride
Lc-ms/ms Larval stages Lfq 
TranscriptomicsDirected shotgun proteomics guided by RNA-Seq identifies a complete expressed prokaryotic proteome
Prokaryotes are, due to their moderate complexity, particularly amenable to the comprehensive identification of the protein repertoire expressed under different conditions. We applied a generic strategy to identify a complete expressed prokaryotic proteome, which is based on the analysis of RNA and ...
ORGANISM(S): Bartonella henselae 
2013-04-23 | E-GEOD-44564 | biostudies-arrayexpress
ProteomicsP.aeruginosa - Whole organism, Biofilm, SC (Toyofuku,j_proteome_res,2012)
abundance based on Spectral counting, biofilm, Interaction consistency score: 7.2, Coverage: 31
ORGANISM(S): 208964 
2012-00-00 | 1231515390 | PAXDB
ProteomicsB.henselae - Whole organism, SC (Omasits,genome_res,2013)
abundance based on Spectral counting, Interaction consistency score: 8.9, Coverage: 86
ORGANISM(S): 283166 
2013-00-00 | 534428800 | PAXDB
TranscriptomicsNatural Genetic Variation Influences Protein Abundances in C. elegans Developmental Signalling Pathways
Complex traits, including common disease-related traits, are affected by many different genes that function in multiple pathways and networks. The apoptosis, MAPK, Notch and Wnt signalling pathways play important roles in development and disease progression. At the moment we have a poor understandin...
ORGANISM(S): Caenorhabditis elegans 
2016-02-16 | E-GEOD-77905 | biostudies-arrayexpress
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