Rubin D D - OmicsDI

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Unknown (1143)
Transcriptomics (80)
Proteomics (20)
Genomics (19)
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Homo sapiens (48)
Mus musculus (32)
Bombyx mori (16)
Onchocerca volvulus (16)
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Brugia malayi (16)
Schizosaccharomyces pombe (16)
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Human immunodeficiency virus 1 (16)
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biostudies-arrayexpress (89)
pride (16)
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Developmental and epileptic encephalopathy 9 (1)
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Technology Type

Mass Spectrometry (16)
Shotgun proteomics (8)
Affinity purification coupled with mass spectrometry proteomics (4)
Bottom-up proteomics (3)
SWATH MS (2)
Data-independent acquisition (2)
Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
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Instrument Platform

Chromium Controller, 10x Genomics and Chromium X, 10x Genomics (1)
Chromium Controller, 10x Genomics and Chromium X, 10x Genomics (1)
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2017 (1)

CHEBI ID

CHEBI:89897 (1)
CHEBI:48595 (1)
CHEBI:49014 (1)
CHEBI:30860 (1)
CHEBI:15621 (1)
CHEBI:28689 (1)
CHEBI:17226 (1)
CHEBI:139123 (1)
CHEBI:42977 (1)
CHEBI:16753 (1)
CHEBI:16113 (1)
CHEBI:16265 (1)
CHEBI:32797 (1)
CHEBI:50048 (1)
CHEBI:28483 (1)
CHEBI:60175 (1)
CHEBI:17168 (1)
CHEBI:18053 (1)
CHEBI:15611 (1)
CHEBI:184023 (1)
CHEBI:15753 (1)
CHEBI:16797 (1)
CHEBI:18257 (1)
CHEBI:16708 (1)
CHEBI:17724 (1)
CHEBI:27713 (1)
CHEBI:17752 (1)
CHEBI:17016 (1)
CHEBI:16750 (1)
CHEBI:17361 (1)

Metabolite Name

Benzoate (1)
25-Hydroxycholesterol (1)
L-2-Hydroxyglutaric acid (1)
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5-S-Methyl-5-thioinosine (1)
(S)-2,3,4,5-tetrahydropyridine-2-carboxylate (1)
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5-Methylthioadenosine (1)
L-Lactic acid (1)
Pyrrolidonecarboxylic acid (1)
(S)-5-Amino-3-oxohexanoate (1)
1-Methylnicotinamide (1)
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2-Hydroxy-2-ethylsuccinic acid (1)
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AMP (1)
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N-Acetylhistamine (1)
N6-Acetyl-L-lysine (1)
L-Methionine S-oxide (1)
L-Lysine (1)
L-Aspartic acid (1)
CMP (1)
Citrulline (1)

First Public Date

2023 (1)

Modification

Not available (1)

Study type

Transcription profiling by array (54)
ChIP-seq (8)
RNA-seq of coding RNA (8)
Unknown experiment type (5)
Genotyping by array (5)
RNA-seq of non coding RNA (4)
Methylation profiling by array (3)
DNA-seq (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2021 (117)
2018 (101)
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2014 (61)
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2007 (11)
2005 (11)
2006 (8)
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2002 (6)
2003 (4)
2000 (3)
2004 (2)
2001 (1)
1998 (1)

Lab affiliation

Department of Medical Biology, Medical University of Bialystok, Poland (1)
Department for BioMedical Research (DBMR) University of Bern Murtenstrasse 35 3008 Bern Switzerland (1)
Department of Human Molecular Genetics and Biochemistry, Sackler Faculty of Medicine, Tel-Aviv University, Tel-Aviv 69978, Israel (1)
Pathology and Laboratory Medicine, Genomic Medicine, Neurological and Pediatrics Institutes, Cleveland Clinic, Cleveland OH (1)
Department of Biomedicine, Aarhus University, Aarhus, Denmark (1)
Professor, Department of Cellular and Molecular Pharmacology (1)
University of Melbourne, Melbourne, Australia (1)
Department of Pathology and Laboratory Medicine, The Joan and Stanford I. Weill Medical College of Cornell University, New York, NY 10065, USA (1)
Michigan Center for Translational Pathology, University of Michigan (1)
PMB, North Carolina State University, USA (1)
Weill Cornell Medical College (1)
Jiangsu Academy of Agricultural Sciences (1)
Department of Biology, Technion–Israel Institute of Technology Haifa, Israel (1)
Stanford University (1)
Departement for Biomedical Research University of Bern Switzerland (1)
Baxter Laboratory for Stem Cell Biology Department of Microbiology & Immunology Stanford University School of Medicine (1)

Tags

xref:PubMed:38789411 (1)

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Transcripts regulated by elevated DKF-2 (WT background)

Transcriptional profiling was used to determine why DKF-2 (protein kinase D) deficiency and surfeit caused hypersensitivity and resistance, respectively, to a bacterial pathogen (P. aeruginosa 14). The studies show that DKF-2 contributes to C. elegans innate immunity by inducing expression of >75 ge...

ORGANISM(S): Caenorhabditis elegans

2009-01-12 | E-GEOD-12456 | biostudies-arrayexpress

Transcription profiling of Arabidopsis apices from control and smz-D flc-3 knock-out plants after photoperiod induction

Response of control (flc-3) and dominant late flowering mutant (smz-D flc-3) to inductive photoperiod (tissue: apices)

ORGANISM(S): Arabidopsis thaliana

2009-06-05 | E-MEXP-2041 | biostudies-arrayexpress

S2-Rubin + Ecdysone smallRNA RNA-Seq

modENCODE_submission_2973 This submission comes from a modENCODE project of Eric Lai. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We plan to generate a comprehensive catalog of expressed and functional microRNAs, and generate biological evidence for their re...

ORGANISM(S): Drosophila melanogaster

2010-10-18 | E-GEOD-24542 | biostudies-arrayexpress

Kc-Rubin + Ecdysone smallRNA RNA-Seq

modENCODE_submission_2974 This submission comes from a modENCODE project of Eric Lai. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We plan to generate a comprehensive catalog of expressed and functional microRNAs, and generate biological evidence for their re...

ORGANISM(S): Drosophila melanogaster

2010-10-18 | E-GEOD-24543 | biostudies-arrayexpress

Drosophila melanogaster small RNA sequence: Kc167 cells (Rubin lab)

modENCODE_submission_2374 This submission comes from a modENCODE project of Eric Lai. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We plan to generate a comprehensive catalog of expressed and functional microRNAs, and generate biological evidence for their re...

ORGANISM(S): Drosophila melanogaster

2009-04-30 | E-GEOD-15899 | biostudies-arrayexpress

Vitamin D Status and COVID-19 Clinical Outcomes in Hospitalized Patients.

Not available

S-EPMC7784779 | biostudies-literature

Cyclin D-Cdk4,6 Drives Cell-Cycle Progression via the Retinoblastoma Protein's C-Terminal Helix.

Not available

S-EPMC6800134 | biostudies-literature

Diagenesis of Vera Rubin Ridge, Gale Crater, Mars, From Mastcam Multispectral Images.

Not available

S-EPMC7685111 | biostudies-literature

Vitamin D Is Associated with α4β7+ Immunophenotypes and Predicts Vedolizumab Therapy Failure in Patients with Inflammatory Bowel Disease.

Not available

S-EPMC8684474 | biostudies-literature

Dermatofibrosarcoma protuberans

Dermatofibrosarcoma protuberans (DFSP) is an aggressive spindle cell neoplasm. It is associated with the chromosomal translocation, t(17:22), which fuses the COL1A1 and PDGFbeta genes. We determined the characteristic gene expression profile of DFSP and characterized DNA copy number changes in DFSP ...

ORGANISM(S): Homo sapiens

2005-12-29 | E-GEOD-3930 | biostudies-arrayexpress

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1263 Results

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