Ruiz P P - OmicsDI

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Unknown (5867)
Proteomics (177)
Transcriptomics (162)
Genomics (21)
Metabolomics (14)
Models (2)

Organisms

Schizosaccharomyces pombe (146)
Human immunodeficiency virus 1 (146)
Oryza sativa Indica Group (146)
Sinorhizobium meliloti BL225C (146)
Sus scrofa domesticus (146)
Ostreococcus tauri (146)
Saccharomyces cerevisiae (146)
Homo sapiens (105)
Mus musculus (47)
Arabidopsis thaliana (9)
Saccharomyces cerevisiae (8)
Rattus norvegicus (4)
Drosophila melanogaster (4)
Scophthalmus maximus (3)
Bifidobacterium breve UCC2003 (2)
Lotus japonicus (2)
plant metagenome (1)
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 (1)
Fusarium oxysporum (1)
Bifidobacterium bifidum (1)
Mus spretus (1)
Mycolicibacterium smegmatis (1)
Macaca mulatta (1)
Blumeria graminis (1)
Brassica napus (1)
Oryza sativa (1)
Pseudomonas putida (1)
Danio rerio (1)
Panulirus argus (1)
Pyricularia oryzae (1)

Organisms

Arabidopsis thaliana (1)

Repository

biostudies-arrayexpress (165)
pride (146)
PeptideAtlas (17)
EGA (16)
MetaboLights (12)
MassIVE (10)
BioModels (2)
iProX (2)
ENA (2)
GNPS (1)
jPOST (1)
MetabolomicsWorkbench (1)
PanoramaPublic (1)

Tissue

Cell culture (24)
Others (17)
Epithelial cell (8)
Heart (5)
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Prokaryotic cell (2)
Leaf (2)
Kidney (2)
Saliva (2)
Leaf (1)
Mesenteric adipose tissue (1)
Vasculature of brain (1)

Disease

Melanoma (4)
Breast cancer (4)
Osteoarthritis (3)
Lyme disease (2)
Obesity (2)
Lymphoma (2)
Chronic kidney disease (2)
Glioblastoma (2)
COVID-19 (2)
Disease free (2)
Acute leukemia (2)
Arrhythmias and right ventricular dysfunction (1)
Cirrhosis (1)
Chronic lymphocytic leukemia (1)
Normal (1)
Pelger-Huet anomaly (1)
Medulloblastoma non-WNT/non-SHH group 3 (1)
Breast ductal adenoma (1)
Fascioliasis (1)
Anal canal squamous cell carcinoma (1)
Intracerebral hemorrhage (1)
Idiopathic pulmonary fibrosis (1)
Childhood medulloblastoma (1)
Dilated cardiomyopathy (1)
Non-small cell lung carcinoma (1)
Severe acute respiratory syndrome (1)
Brain glioblastoma multiforme (1)
Thoracic aortic aneurysm (1)
Lung adenocarcinoma (1)
Alpha 1-antitrypsin deficiency (1)

Technology Type

Mass Spectrometry (147)
Shotgun proteomics (83)
Bottom-up proteomics (27)
Affinity purification coupled with mass spectrometry proteomics (18)
Gel-based experiment (12)
Mass spectrometry (11)
Data-dependent acquisition (10)
SWATH MS (5)
Top-down proteomics (5)
SRM/MRM (4)
Mass spectrometry imaging (2)
RNA mass spectrometry (2)
MSE (2)
All-ion fragmentation (2)
DiaPASEF (2)
HDMSE (2)
Data-independent acquisition (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Infinium Omni2.5M (1)
Complete Genomics (COMPLETE_GENOMICS) (1)
AB 5500xl Genetic Analyzer (1)
Illumina (1)
Illumina 1.2M, Illumina 610K Quad, Affymetrix 6.0 (1)
NMR spectroscopy (1)
EI (1)
Proteogenomics (1)
Immunopeptidomics (1)

Instrument Platform

NextSeq 500 (10)
LTQ Orbitrap Velos (10)
TripleTOF 5600 (6)
Illumina HiSeq 2500 (4)
Illumina NovaSeq 6000 (4)
NextSeq 2000 (3)
MS:1000419 (3)
Illumina NovaSeq X (2)
Illumina MiSeq (2)
Illumina HiSeq 4000 (2)
MS:1000044 (2)
MS:1000031 (2)
LTQ Orbitrap (2)
Q Exactive (2)
Gas Chromatography MS - (2)
Gas Chromatography MS - positive (2)
Liquid Chromatography MS - negative - reverse phase (2)
CytoFLEX SRT Benchtop Cell Sorter (1)
Sony SH800S Cell Sorter (1)
Microarray scanner system (1)
MoFlo XDP (Beckman Coulter) or a FACSAria II (Becton Dickinson) (1)
Fluidigm C1 autoprep system (1)
ScanArray Lite [PerkinElmer] (1)
GenePix Professional 4200A [Axon Instruments] (1)
Illumina Genome Analyzer IIx (1)
NextSeq 550 (1)
Illumina HiSeq 2000 (1)
6545 Q-TOF LC/MS (1)
Orbitrap Fusion (1)
Orbitrap Eclipse (1)

Publication Date

2023 (34)
2022 (34)
2014 (34)
2012 (30)
2025 (22)
2024 (21)
2021 (20)
2015 (19)
2019 (18)
2026 (18)
2016 (17)
2010 (16)
2013 (13)
2011 (13)
2020 (10)
2018 (9)
2017 (8)
2008 (7)
2009 (4)
2007 (4)
2004 (2)
2006 (1)
2005 (1)

UNIPROT ID/AC

Q96I25 (17)
Q9Y371 (17)
Q9UKY7 (17)
Q9UHD1 (17)
Q9UBC2-2 (17)
Q9UBC2 (17)
Q9HB07 (17)
Q9GZZ1 (17)
Q969G3 (17)
Q92785 (17)
Q8WVJ2 (17)
Q86U42 (17)
Q9Y6G9 (17)
Q9Y3B2 (17)
Q9UHV9 (17)
Q9NSD9 (17)
Q9NPD3 (17)
Q9NP79 (17)
Q9H444 (17)
Q9BRL6 (17)
Q99615 (17)
Q96AG4 (17)
Q86V81 (17)
Q9Y2T7 (17)
Q9UMR2 (17)
Q9UJU6-3 (17)
Q9UJU6 (17)
Q9UBT2 (17)
Q9P2J5 (17)
Q9NUU7 (17)

ENSEMBL ID

ENSG00000170477 (17)
ENSG00000147251 (4)
ENSG00000247315 (3)

CHEBI ID

CHEBI:58731 (1)
CHEBI:61715 (1)
CHEBI:144504 (1)
CHEBI:15856 (1)
CHEBI:17824 (1)
CHEBI:83905 (1)
CHEBI:32879 (1)
CHEBI:47205135 (1)
CHEBI:151 (1)
CHEBI:26907 (1)
CHEBI:62861 (1)
CHEBI:138360 (1)
CHEBI:156229 (1)
CHEBI:61056 (1)
CHEBI:57518 (1)
CHEBI:77190 (1)
CHEBI:62087 (1)
CHEBI:51310 (1)
CHEBI:16135 (1)
CHEBI:36484 (1)
CHEBI:4648 (1)
CHEBI:32968 (1)
CHEBI:64252 (1)
CHEBI:51312 (1)
CHEBI:61507 (1)
CHEBI:44147 (1)
CHEBI:60392 (1)
CHEBI:58893 (1)
CHEBI:15730 (1)
CHEBI:85971 (1)

Metabolite Name

Valine (3)
Leucine (3)
Tyrosine (3)
Serine (3)
Phenylalanine (3)
Linoleic acid (3)
Isoleucine (3)
Glycine (3)
Acetate (2)
5-oxoproline (2)
Myo-inositol (2)
Threonic acid (2)
Oxalic acid (2)
Sorbitol (2)
Urea (2)
Methionine (2)
Citric acid (2)
Stearic acid (2)
Lysine (2)
Asparagine (2)
Alanine (2)
Taurine (2)
Cytosine (2)
Choline (2)
Adenine (2)
Threonine (2)
Proline (2)
Palmitic acid (2)
Glutamine (2)
Glutamic acid (2)

First Public Date

2025 (1)
2023 (1)

Modelling Approach

Ordinary differential equation model (1)
Constraint-based model (1)

Lab affiliation

Berlin Institute of Health at Charite, Universitaetsmedizin Berlin, Core Facility Proteomics; Max Delbrueck Center for Molecular Medicine in the Helmholtz Association (MDC), Berlin, Germany (4)
Proteomics - Bioinformatics (4)
UFIEC, Chronic Disease Programme, Functional Proteomics Unit, Instituto de Salud Carlos III (3)
University of Cadiz (3)
Blizard Institute, Centre for Genomics and Child Health, Barts and The London School of Medicine and Dentistry, Queen Mary University of London, London, E1 2AT, UK (2)
UPR 9002 CNRS-ARN Université De Strasbourg IBMC (2)
Head of Lab of Cancer Signaling GIGA-institute Université de Liège CHU, B34, Tour GIGA (+2) B-4000 Liège (2)
Proteomics Platform CIC bioGUNE Bizkaia Tech. Park Build. 800 48160 Derio (Spain) (2)
Proteomics Unit (2)
Department of Physiology, Faculty of Pharmacy, University of Valencia, Burjassot, Valencia, Spain (2)
Centro de Investigaciones Biológicas Margarita Salas, CSIC, Madrid, Spain (2)
Department of Human Genetics and Biochemistry Sackler School of Medicine Tel Aviv University Tel-Aviv, Israel 69978 (2)
Microbial Evolution Laboratory, Centro de Astrobiologia (CSIC-INTA), 28850 Torrejón de Ardoz, Madrid, Spain (2)
Professor, Molecular Medicine Scientific Director UF Scripps Biomedical Research University of Florida (2)
Biozentrum, University of Basel, Switzerland (2)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (2)
Institute for Research in Immunology and Cancer, Department of Biochemistry, Department of Chemistry, Université de Montréal, Québec, Canada H3T 1J4 (2)
Morpho-phisiology department, Faculty of Medicine, NAtional University of Cuyo. IHEM (Histology and Embriology Institute of Mendoza), CONICET, Mendoza Argentina. (1)
Estación Experimental del Zaidín, CSIC, Granada, Spain (1)
Spanish National Cancer Research Centre (CNIO) Address: Melchor Fernández Almagro, 3. 28029 Madrid. SPAIN (1)
Department of Biochemistry and Tissue Biology, Institute of Biology, University of Campinas, Campinas, SP, Brazil (1)
Université Côte d'Azur, CNRS (1)
Department of Cell Biology and Histology, Faculty of Medicine, Campus Mare Nostrum,University of Murcia, 30100 Murcia, IMIB, Spain (1)
Plant Biology Section, School of Integrative Plant Science, Cornell University (1)
Prof. Dr. Martin von Bergen Helmholtz Centre for Environmental Research - UFZ Head of Department for Molecular Systems Biology http://www.ufz.de/index.php?de=17634 Professor of Functional Proteomics Faculty of Life Sciences, Pharmacy and Psychology University of Leipzig Permoserstr. 15 04318 Leipzig GERMANY (1)
Microenvironment and Metastasis Laboratory, Molecular Oncology Programme, Spanish National Cancer Research Center (CNIO), Madrid, Spain. (1)
Department of Pediatrics, Division of Pediatric Hematology/Oncology and Biological Chemistry, University of Michigan Medical School, Ann Arbor, MI 48109, USA (1)
Université de Strasbourg, CNRS, Architecture et Réactivité de l’ARN, 67084 Strasbourg, France (1)
Grupo de Investigación de Reumatología, INIBIC-Complejo Hospitalario Universitario de A Coruña, SERGAS, Departamento de Medicina Universidad de A Coruña, A Coruña, Spain (1)
DZNE - German Center for Neurodegenerative Diseases Munich Neuroproteomics Feodor-Lynen Str. 17 D-81377 Munich Germany (1)

IsPrivate

False (2)

Submitter Keywords

Immuno-oncology (1)

Modification

Methionine (1)

Study type

Transcription profiling by array (113)
Comparative genomic hybridization by array (10)
RNA-seq of coding RNA (9)
Hi-C (7)
ChIP-seq (3)
Methylation profiling by array (3)
RNA-seq of coding RNA from single cells (3)
RNA-seq of non coding RNA (3)
Other (2)
RNA-seq of total RNA (2)
Unknown experiment type (1)
RNA-seq of non coding RNA from single cells (1)
Human - Methylation microarray (1)
Human - High-throughput sequencing (1)
High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
Transcription profiling by RT-PCR (1)
4C (1)
RIP-seq (1)

Release Date

2022 (814)
2021 (753)
2023 (738)
2025 (729)
2024 (559)
2020 (493)
2019 (349)
2018 (285)
2017 (230)
2016 (204)
2015 (160)
2014 (152)
2012 (113)
2026 (97)
2013 (90)
2011 (73)
2010 (62)
2008 (37)
2009 (32)
2007 (15)
2006 (13)
2005 (13)
2004 (6)
2003 (5)
1999 (3)
2002 (2)
2001 (2)
1998 (1)
1995 (1)
1990 (1)

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Excess degassing drives long-term volcanic unrest at Nevado del Ruiz.

Not available

S-EPMC10786892 | biostudies-literature

Transcription profiling of liver endothelial cells in cirrhotic rats

The study was performed in liver-endothelial cells (LECs) isolated from 6 adult male Wistar rats, undergoing a cirrhosis induction protocol as described previously by our group, and LECs isolated from 6 control Wistar rats, according to the criteria of the Investigation and Ethics Committee of the H...

ORGANISM(S): Rattus norvegicus

2007-09-05 | E-GEOD-1843 | biostudies-arrayexpress

Post-transcriptional regulation of stress response in a myo1? mutant of the budding yeast Saccharomyces cerevisiae

The microarrays experiments of three biological and one technical replicates were performed in YJR12 (wt) and YJR13 (myo1?) strains. YJR12 (wild type) and YJR13 (myo1?) strains were obtained as haploid segregants from a cross between YJR6 (myo1::HIS5 strain) and BY4741 (obtained from ATTC). Cultures...

ORGANISM(S): Saccharomyces cerevisiae

2010-12-08 | E-GEOD-20203 | biostudies-arrayexpress

Application of pharmacokinetic modelling for 2,3,7,8-tetrachlorodibenzo-p-dioxin exposure assessment.

Not available

S-EPMC8204318 | biostudies-literature

P-C, P-N, and M-N Bond Formation Processes in Reactions of Heterometallic Phosphinidene-Bridged MoMn and MoRe Complexes with Diazoalkanes and Organic Azides to Build Three- to Five-Membered Phosphametallacycles.

Not available

S-EPMC9682477 | biostudies-literature

Identification of a putative P-transporter operon in the genome of a Burkholderia strain living inside the arbuscular mycorrhizal fungus Gigaspora margarita.

Not available

S-EPMC93904 | biostudies-literature

Bayesian prediction intervals for assessing P-value variability in prospective replication studies.

Not available

S-EPMC5802740 | biostudies-literature

Complete chloroplast genome sequence and phylogenetic analysis of a wild species of abiu fruit, Pouteria caimito (Ruiz & Pavon.) Radlk.

Not available

S-EPMC7819124 | biostudies-literature

Postia placenta MAD-698 gene expression in different media

Transscript profiles of Postia placenta grown on different substrates were analyszed. Array design was based on the DoE's Joint Genome Institute's gene models for P. placenta version 1. The research goal is to identtify genes essential for cellulose depolymerization. Keywords: Culture condition com...

ORGANISM(S): Postia placenta

2010-05-14 | E-GEOD-12540 | biostudies-arrayexpress

Longitudinal trajectory of plasma p-tau217 in cognitively unimpaired subjects.

Not available

S-EPMC11661039 | biostudies-literature

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6243 Results

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