Ruminant - OmicsDI

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Unknown (2092)
Genomics (437)
Transcriptomics (82)
Proteomics (39)
Metabolomics (18)
Methylation profiling (3)
Models (1)
Other (1)

Organisms

Bos taurus (50)
Ovis aries (24)
Capra hircus (18)
Staphylococcus aureus (6)
Homo sapiens (4)
Sus scrofa (4)
Mycobacterium avium subsp. paratuberculosis (3)
Escherichia coli (3)
Cervus elaphus hispanicus (2)
Cervus elaphus (2)
Bos grunniens (2)
Gallus gallus (2)
Mycobacterium avium subsp. paratuberculosis K-10 (1)
Brucella abortus (1)
Haemonchus contortus (1)
Medicago truncatula (1)
Streptomyces venezuelae (1)
Parabronema skrjabini (1)
Mycoplasmopsis bovis (1)
Chlamydia trachomatis (1)
Yersinia pestis (1)
Escherichia coli O157:H7 str. EDL933 (1)
Coxiella burnetii (1)
Borreliella burgdorferi (1)
Bubalus bubalis (1)
Streptococcus pyogenes (1)
Leptospira interrogans (1)
Mus musculus (1)
Neospora caninum (1)
Homo (1)

Organisms

Bos taurus (32)
gut metagenome (17)
bovine gut metagenome (15)
Listeria monocytogenes (15)
Capra hircus (12)
Mycoplasma mycoides subsp. mycoides (8)
Coxiella burnetii (8)
Ovis aries (6)
bovine metagenome (5)
Clostridium perfringens A (3)
Mycoplasma mycoides subsp. capri (3)
Escherichia coli (3)
Dictyocaulus viviparus (2)
sheep gut metagenome (2)
Bubalus bubalis (2)
Staphylococcus aureus (2)
Mycoplasmopsis agalactiae 14628 (1)
Methanosphaera sp. ISO3-F5 (1)
Cryptosporidium parvum virus 1 (1)
Mannheimia haemolytica D153 (1)
Methanobrevibacter ruminantium (1)
Methanomassiliicoccales (1)
Cervus elaphus hispanicus (1)
methanogenic archaeon ISO4-H5 (1)
Humibacter sp. BT305 (1)
Waddlia chondrophila WSU 86-1044 (1)
Mannheimia haemolytica TVL (1)
Listeria monocytogenes FSL J2-003 (1)
Kocuria sp. BT304 (1)
Mycoplasma mycoides subsp. mycoides str. Gemu Goffa (1)

Repository

ENA (417)
geo (53)
biostudies-arrayexpress (50)
pride (33)
MetaboLights (17)
EVA (4)
MassIVE (4)
BioModels (1)
GNPS (1)
iProX (1)
PanoramaPublic (1)

Tissue

Rumen (4)
Whole body (4)
Epithelial cell (3)
Milk (3)
Abdominal adipose tissue (2)
Cell culture (2)
Dental plaque (2)
Rumen epithelium (2)
Abomasum (1)
Adipose tissue (1)
Blood (1)
Blood plasma (1)
Blood platelet (1)
Blood serum (1)
Bone (1)
Cecum (1)
Colon (1)
Culture fluid (1)
Duodenum (1)
Erythrocyte (1)
Feces (1)
Gastric juice (1)
HeLa cell (1)
Ileum (1)
Intestine (1)
Jejunum (1)
Kidney cell line (1)
Liver (1)
Longissimus lumborum (1)
Muscle (1)

Disease

Disease free (2)
Parasitic helminthiasis infectious disease (2)
Mastitis (1)

Technology Type

Mass Spectrometry (33)
Shotgun proteomics (20)
Mass spectrometry (11)
Bottom-up proteomics (8)
Mass spectrometry assay (5)
Gel-based experiment (4)
Data-dependent acquisition (3)
NMR spectroscopy (1)
Glycoproteomics (1)
SWATH MS (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse-phase (6)
Liquid Chromatography MS - positive - reverse-phase (5)
Illumina HiSeq 2500 (3)
Liquid Chromatography MS - positive - reverse phase (3)
Liquid Chromatography MS - negative - reverse phase (3)
Agilent 2100 Bioanalyzer (2)
- (2)
Orbitrap Exploris 480 (2)
Liquid Chromatography MS - alternating - reverse-phase (2)
NanoDrop (1)
Illumina MiSeq (1)
Illumina NovaSeq 6000 (1)
ABI 3500 Genetic Analyzer (1)
Illumina (1)
Synapt MS (1)
MaXis (1)
Q Exactive (1)
Q Exactive HF (1)
Flow injection analysis MS - negative (1)
Flow injection analysis MS - positive (1)
Liquid Chromatography MS - alternating (1)
Bruker (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - negative - HILIC (1)
Liquid Chromatography MS - positive - HILIC (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2025 (18)
2026 (16)
2024 (16)
2010 (14)
2023 (14)
2021 (14)
2019 (9)
2014 (9)
2012 (9)
2015 (8)
2022 (7)
2011 (7)
2013 (4)
2009 (4)
2020 (4)
2018 (4)
2008 (2)
2007 (2)
2017 (2)
2016 (1)

CHEBI ID

CHEBI:18132 (2)
CHEBI:16704 (2)
CHEBI:15493 (1)
CHEBI:17769 (1)
CHEBI:17535 (1)
CHEBI:80612 (1)
CHEBI:15343 (1)
CHEBI:16891 (1)
CHEBI:16327 (1)
CHEBI:15412 (1)
CHEBI:30907 (1)
CHEBI:16077 (1)
CHEBI:15531 (1)
CHEBI:42111 (1)
CHEBI:70959 (1)
CHEBI:70958 (1)
CHEBI:28822 (1)
CHEBI:17553 (1)
CHEBI:44409 (1)
CHEBI:17256 (1)
CHEBI:17822 (1)
CHEBI:26271 (1)
CHEBI:17287 (1)
CHEBI:15846 (1)
CHEBI:25094 (1)
CHEBI:17202 (1)
CHEBI:17230 (1)
CHEBI:16856 (1)
CHEBI:18237 (1)
CHEBI:15356 (1)

Metabolite Name

Adenine (6)
Tryptophyl-Lysine (4)
6,8-Dihydroxypurine (4)
Ursodeoxycholic acid (4)
Trilostane (4)
Enterolactone (4)
5-Methylcytosine (4)
Ornithine (4)
Prolylhydroxyproline (4)
Hydroquinone (4)
Riboflavin (4)
Glutaric acid (4)
Sedoheptulose (4)
Creatinine (4)
L-Phenylalanine (4)
Inosine (4)
Irofulven (3)
Kifunensine (3)
Milbemycin D (3)
N-(4-Aminobutyl)-N-ethylisoluminol (3)
5,10-Methylenetetrahydromethanopterin (3)
Pelubiprofen (3)
Fructosylvaline (3)
20-Hydroxyecdysone (3)
9-(4-Fluoro-3-(hydroxymethyl)butyl)guanine (3)
Ulimorelin (3)
Desacetyllaurenobiolide (3)
6-Hydroxypseudooxynicotine (3)
Isorhamnetin (3)
Alpha-Carboxy-delta-decalactone (3)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

First Public Date

2026 (54)
2025 (48)
2021 (46)
2024 (44)
2013 (37)
2019 (33)
2014 (32)
2022 (30)
2023 (22)
2020 (18)
2018 (18)
2016 (13)
2017 (12)
2015 (9)
2010 (1)

Classification

bacteria (42)
viruses (1)

Modelling Approach

Constraint-based model (1)

Study type

Transcription profiling by array (27)
RNA-seq of coding RNA (9)
Comparative genomic hybridization by array (4)
RNA-seq of non coding RNA (4)
Unknown experiment type (2)
Human - One-color microarray (1)
ChIP-seq (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2021 (235)
2022 (234)
2025 (232)
2023 (228)
2024 (205)
2020 (175)
2018 (131)
2019 (122)
2017 (88)
2015 (83)
2016 (67)
2014 (61)
2013 (52)
2026 (46)
2010 (37)
2012 (34)
2011 (20)
2009 (20)
2007 (17)
2008 (16)
2003 (9)
2006 (7)
2005 (5)
2002 (5)
2001 (4)
2004 (2)
2000 (2)
1999 (2)
1998 (2)
1997 (1)

Lab affiliation

Department of Ruminant Science, Institute of Animal Sciences, Agricultural Research Organization, Volcani Center, Israel (2)
Faculty of Chemistry, Biotechnology and Food Science Norwegian University of Life Sciences Post Office Box 5003 1432, Ås Norway (2)
CEA-Marcoule, ProGénoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Cèze, France (1)
Centre for Bioinnovation, University of the Sunshine Coast, Maroochydore, Queensland 4558, Australia. (1)
Centre for Microbiome Research, School of Biomedical Sciences, Queensland University of Technology (QUT), Translational Research Institute, Woolloongabba, QLD, Australia (1)
Department of Pediatrics, University of Alabama at Birmingham, United States of America. (1)
Department of Veterinary Biosciences, Melbourne Veterinary School, Faculty of Science, The University of Melbourne, Parkville, Victoria 3010, Australia (1)
Faculty of Chemistry, Biotechnology and Food Science Norwegian University of Life Sciences Post Office Box 5003 1432, Ås, Norway (1)
Faculty of Chemistry, Biotechnology and Food Science Norwegian University of Life Sciences Post Office Box 5003 1432,Ås, Norway (1)
German Federal Institute for Risk Assessment Department Food Chemistry National Reference Laboratory for Animal Protein in Feed (1)
IBERS, Aberystwyth University (1)
INRAE-THEIX PFEM composante proteomique UR QuaPA (1)
Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, Aberystwyth SY23 3DA, United Kingdom (1)
LIST-ERIN-ERTP-Green Tech Integrative Biology platform Belvaux, LUXEMBOURG (1)
La Trobe university (1)
Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences (1)
Max Planck Institute for the Science of Human History (1)
Max Planck Institute for the Science of Human History Department of Archaeogenetics (1)
NSW Department of Primary Industries, Extensive Livestock Industry Centre, Trevenna Rd, University of New England, Armidale, NSW, 2351, Australia. (1)
NSW Department of Primary Industries, JSF Barker Building, Trevenna road, University of New England, Armidale, NSW 2351 (1)
NSW Department of Primary Industries, JSF Barker Building, Trevenna road, University of New England, Armidale, NSW 2351. jude.bond@dpi.nsw.gov.au (1)
Norwegian University of Life Sciences (1)
Oregon State University (1)
Porto Conte Ricerche, Science and Technology Park of Sardinia, Tramariglio, Alghero, Italy (1)
Proteins & Metabolites Team, Lincoln Research Centre, AgResearch Limited, Lincoln, New Zealand (1)
Proteomics and Mass Spectrometry of Biomolecules, ProteoToul Research Proteomics Facility of Toulouse, ProteoToul Services Proteomics French Infrastructure, ProFI IPBS, CNRS, UMR 5089 205 route de Narbonne BP 64182 31077 Toulouse Cedex France (1)
Ruminant Diseases and Immunology Unit, National Animal Disease Center, USDA/ARS, Ames IA, 50010 United States (1)
Shandong Normal University (1)
UMR 117 CIRAD-INRA ASTRE Montpellier, France (1)
University of Veterinary Medicine Vienna (1)

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ruminant

ruminant Metagenomic assembly -RGMC

PRJNA1190869 | ENA

Ruminant Gut

Ruminant Gut Metagenome

PRJNA1458678 | ENA

ruminant genome project

Ruminant Genome Project

PRJNA438286 | ENA

A metagenomic catalogue of the ruminant gut archaeome

ruminant gut archaeome

PRJEB81441 | ENA

Ruminant microbiomes from multiple body sites

HoloRuminant: Understanding microbiomes of the ruminant holobiont

PRJNA810313 | ENA

Transcription profiling by array of Staphylococcus aureus reveals insights into the origin and molecular basis of ruminant host adaptation

Data is also available from BuG@Sbase

ORGANISM(S): Staphylococcus aureus

2010-08-17 | E-BUGS-94 | biostudies-arrayexpress

Genome-scale analysis of Staphylococcus aureus reveals host-specific diversification of the core genome.

Staphylococcus aureus causes disease in humans and a wide array of animals. Of note, S. aureus mastitis of ruminants, including cows, sheep and goats, results in major economic losses worldwide. Extensive variation in genome content exists among S. aureus pathogenic clones. However, the genomic vari...

ORGANISM(S): Staphylococcus aureus

2008-11-18 | E-GEOD-10187 | biostudies-arrayexpress

Paleo-proteomic analysis of Iron Age dental calculus provides direct evidence of Scythian reliance on ruminant dairy

Previous stable isotopic and archaeological evidence have characterized the Scythians from the Northern Black Sea Region sites, Bel’sk and Mamai-Gora, as agro-pastoralists. To further investigate their diet and food sources, a shotgun proteomic analysis was performed on Scythian dental calculus. The...

ORGANISM(S): Homo

2023-08-10 | MSV000092635 | MassIVE

Ruminant gut microbes

Ruminant gut microbes Raw sequence reads

PRJNA688363 | ENA

Expansion of ruminant-specific microRNAs shapes target gene expression divergence between ruminant and non-ruminant species.

Not available

S-EPMC3847189 | biostudies-literature

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2674 Results

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