Ruth M M - OmicsDI

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Unknown (1031)
Transcriptomics (146)
Proteomics (87)
Genomics (63)
Metabolomics (18)
Models (6)
Multiomics (1)

Organisms

Homo sapiens (152)
Mus musculus (70)
Rattus norvegicus (8)
Arabidopsis thaliana (6)
Drosophila melanogaster (6)
Zea mays (5)
Bos taurus (3)
Sus scrofa (3)
Escherichia coli (2)
Gallus gallus (2)
Naja melanoleuca (2)
Saccharomyces cerevisiae (2)
Methanothermobacter marburgensis str. Marburg (1)
Methanothermobacter thermautotrophicus (1)
Methanothermobacter thermautotrophicus str. Delta H (1)
cellular organisms (1)
Mus musculus musculus x Mus musculus castaneus (1)
Aliivibrio salmonicida LFI1238 (1)
Cervus elaphus (1)
Mycobacterium tuberculosis CDC1551 (1)
Biomphalaria glabrata (1)
Chlamydomonas reinhardtii (1)
Mus musculus domesticus (1)
synthetic construct (1)
Glycine max (1)
330 (1)
Acetobacterium woodii (1)
Alnus glutinosa (1)
Betula pendula (1)
Corylus avellana (1)

Repository

biostudies-arrayexpress (159)
pride (64)
EGA (49)
MassIVE (20)
MetaboLights (17)
BioModels (4)
PanoramaPublic (3)
Cell Collective (1)
FAIRDOMHub (1)
GNPS (1)
ENA (1)

Tissue

Cell culture (12)
Lung (7)
Liver (5)
Heart (4)
Hepatocyte (4)
Fibroblast (3)
Cell suspension culture (2)
HEK-293T cell (2)
Monocyte (2)
Oral mucosa (2)
Permanent cell line cell (2)
Primary cell (2)
Vocal fold (2)
Blood platelet (1)
Brain (1)
Cardiac muscle cell (1)
Colon (1)
Epithelial cell (1)
HepG2 cell (1)
Hypothalamus (1)
Kidney epithelial cell (1)
Macrophage (1)
Mucosa (1)
Neuroblastoma cell (1)
Oocyte (1)
Oral epithelium (1)
Placenta (1)
Plant cell (1)
Pollen (1)
Respiratory mucus (1)

Disease

Normal (3)
Neuroblastoma (3)
Refractory cytopenia with multilineage dysplasia and ringed sideroblasts (1)
Squamous cell carcinoma (1)
Melanoma (1)
Melanoma (1)
Abnormal inflammatory response (1)
Anosmia (1)
Cardiovascular system disease (1)
Colon cancer (1)
Hyposmia (1)
Laryngeal disease (1)
Lung adenocarcinoma (1)
Lung cancer (1)
Lung squamous cell carcinoma (1)
Malignant neoplasm of ovary (1)
Muscular atrophy (1)
Non-small cell lung carcinoma (1)
Pancreatic ductal adenocarcinoma (1)
Severe COVID-19 (1)

Technology Type

Mass Spectrometry (64)
Shotgun proteomics (45)
Mass spectrometry (13)
Affinity purification coupled with mass spectrometry proteomics (10)
Bottom-up proteomics (10)
Data-independent acquisition (9)
Data-dependent acquisition (5)
SWATH MS (4)
Gel-based experiment (3)
Illumina HiSeq 2000 (2)
Mass spectrometry assay (2)
NMR spectroscopy (2)
Complete Genomics (COMPLETE_GENOMICS) (1)
ILLUMINA, Illumina HiSeq 2000 (1)
ILLUMINA, Illumina HiSeq 4000, Illumina HiSeq 2500 (1)
Illumina 1.2M, Affymetrix 6.0, Affymetrix 6.0 - CHIAMO (1)
Illumina HumanExome-12v1_A-GenCall, zCall, GenoSNP, - Illuminus (1)
HDMSE (1)
Top-down proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (9)
Q Exactive (8)
TSQ Quantiva (6)
Agilent High resolution C scanner (4)
Illumina HiSeq 2500 (3)
NextSeq 500 (3)
Orbitrap Exploris 480 (3)
Illumina HiSeq 4000 (2)
LTQ Orbitrap Elite (2)
Linux Bash Scripting (1)
NEBNext Ultra II Directional RNA Library Prep (1)
Qiagen RNeasy Mini Kit (1)
With L-glutamine supplemented with 10% fetal bovine serum (FBS) (Gibco) and 1% penicillin-streptomycin (10,000 units/mL penicillin and 10 mg/mL streptomycin) (Gibco). (1)
Illumina HiSeq 4000 system (1)
Agilent SureScan High Resolution scanner (1)
Ilumina HiScan H166 (1)
DNA Microarray Scanner (Model G2505C, Agilent Technologies) (1)
Illumina iScan (1)
The TLDA cards were analyzed on the Applied Biosystems 7900HT Real-Time PCR System. (1)
Illumina Genome Analyzer IIx (1)
Ion Torrent PGM (1)
R (1)
Illumina HiSeq 2000 (1)
LCMS-IT-TOF (1)
4000 QTRAP (1)
Exactive Plus (1)
Impact II (1)
LTQ Orbitrap Velos (1)
Orbitrap Fusion (1)
Orbitrap Fusion Lumos (1)

Publication Date

2012 (24)
2021 (20)
2014 (20)
2020 (19)
2023 (18)
2013 (18)
2015 (17)
2010 (15)
2025 (13)
2022 (13)
2011 (13)
2024 (12)
2026 (10)
2008 (10)
2016 (9)
2019 (8)
2018 (8)
2009 (6)
2017 (5)
2007 (5)
2004 (2)

CHEBI ID

CHEBI:10049 (3)
CHEBI:10066 (3)
CHEBI:10067 (3)
CHEBI:10246 (3)
CHEBI:10261 (3)
CHEBI:10489 (3)
CHEBI:10491 (3)
CHEBI:10492 (3)
CHEBI:10493 (3)
CHEBI:10494 (3)
CHEBI:10495 (3)
CHEBI:10497 (3)
CHEBI:10499 (3)
CHEBI:10500 (3)
CHEBI:10529 (3)
CHEBI:10530 (3)
CHEBI:10531 (3)
CHEBI:10532 (3)
CHEBI:10533 (3)
CHEBI:10745 (3)
CHEBI:10866 (3)
CHEBI:10888 (3)
CHEBI:10925 (3)
CHEBI:10966 (3)
CHEBI:10986 (3)
CHEBI:11033 (3)
CHEBI:11063 (3)
CHEBI:11186 (3)
CHEBI:11192 (3)
CHEBI:11195 (3)

Metabolite Name

Adenosine (7)
Alanine (7)
Adenine (6)
Betaine (6)
Carnitine (6)
Choline (6)
Glucose (6)
Glycine (6)
Hypoxanthine (6)
Inosine (6)
Lactate (6)
Leucine (6)
Threonine (6)
Uridine (6)
Xanthosine (6)
1-linoleoyl-GPC (18:2) (5)
1-methylhistidine (5)
1-methylnicotinamide (5)
1-palmitoyl-2-oleoyl-GPC (16:0/18:1) (5)
1-palmitoyl-GPC (16:0) (5)
1-palmitoyl-GPE (16:0) (5)
1-palmitoyl-GPI (16:0) (5)
1-stearoyl-2-arachidonoyl-GPC (18:0/20:4) (5)
1-stearoyl-2-arachidonoyl-GPE (18:0/20:4) (5)
1-stearoyl-2-oleoyl-GPC (18:0/18:1) (5)
1-stearoyl-2-oleoyl-GPE (18:0/18:1) (5)
2'-deoxyuridine (5)
2-hydroxyglutarate (5)
2-hydroxystearate (5)
3-aminoisobutyrate (5)

IsPrivate

False (4)

Submitter Keywords

FROG (3)

First Public Date

2022 (1)

Modelling Approach

Constraint-based model (3)
Ordinary differential equation model (1)

Modification

15.99491 (1)
57.02146 (1)

Study type

Transcription profiling by array (84)
RNA-seq of coding RNA (15)
Methylation profiling by array (11)
ChIP-seq (9)
RNA-seq of non coding RNA (5)
Comparative genomic hybridization by array (4)
RNA-seq of coding RNA from single cells (4)
Methylation profiling by high throughput sequencing (4)
Unknown experiment type (3)
Animal - One-color microarray (3)
Genotyping by array (3)
Transcription profiling by RT-PCR (3)
Animal - High-throughput sequencing (2)
Cell line - High-throughput sequencing (2)
RNA-seq of total RNA (2)
Human - Two-color microarray (1)
ChIP-chip by tiling array (1)
MicroRNA profiling by high throughput sequencing (1)
Other (1)
MicroRNA profiling by array (1)

Release Date

2022 (127)
2021 (125)
2025 (115)
2024 (111)
2023 (94)
2019 (93)
2020 (86)
2018 (75)
2017 (61)
2016 (53)
2014 (44)
2015 (42)
2013 (34)
2012 (32)
2010 (23)
2011 (20)
2026 (16)
2008 (15)
2009 (9)
2007 (7)
2004 (4)
2002 (3)
2005 (1)

Lab affiliation

Austrian Centre of Industrial Biotechnology (ACIB), Petersgasse 14, 8010 Graz, Austria; Medical University of Graz, Institute of Pathology, Research Unit Functional Proteomics and Metabolic Pathways, Stiftingtalstrasse 24, 8010 Graz, Austria; Omics Center Graz, BioTechMed-Graz, Stiftingtalstrasse 24, 8010 Graz, Austria. (3)
Faculty of Technical Chemistry, Institute of Chemical Technologies and Analytics, Technische Universität Wien, Getreidemarkt 9/164, 1060 Vienna, Austria (3)
Research and Diagnostic Institute of Pathology, Medical University of Graz, Stiftingtalstrasse 6, 8010 Graz, Austria; Faculty of Technical Chemistry, Institute of Chemical Technologies and Analytics, Technische Universität Wien, Getreidemarkt 9/164, 1060 Vienna, Austria (3)
Full Professor for Analytical Chemistry Institute of Chemical Technologies and Analytics TU Wien Getreidemarkt 9/E164 A-1060 Vienna Austria (2)
Full Professor for Analytical Chemistry Vienna University of Technology Institute of Chemical Technologies and Analytics Getreidemarkt 9/E164 A-1060 Vienna Austria (2)
Univ.Prof. PD DI Dr.techn. Professor for Bioanalytics TU Wien Faculty of Technical Chemistry Institute of Chemical Engineering and Analytics Department of Imaging and Analytical Chemistry Research Group Bioanalytics Getreidemarkt 9/E164 1060 Vienna Austria (2)
Bio-molecular sciences, The Weizmann Institue of Science, Israel (1)
Celleluar and Molecular Pharmacology, UCSF (1)
Cellular and Molecular Pharmacology, UCSF, San Francisco, CA (1)
Center for Pathophysiology, Infectiology and Immunology, Medical University of Vienna, 1090 Vienna, Austria. (1)
Department of Animal and Poultry Sciences, Virginia Tech., Blacksburg, VA, USA (1)
Department of Cellular and Molecular Pharmacology, University of California, San Francisco, CA 94158, USA (1)
Department of Cellular and Molecular Pharmamcology, UCSF (1)
Department of Human Biology, School of Nutrition and Translational Research in Metabolism (NUTRIM), Maastricht University, Maastricht, the Netherlands (1)
Department of Human Molecular Genetics and Biochemistry, Sackler Faculty of Medicine and Sagol School of Neurosciences, Tel Aviv University, Tel Aviv 69978, Israel (1)
Department of Medical Biochemistry and Cell Biology, Instititute of Biomedicine at the Sahlgrenska Academy, University of Gothenburg, SE-40530 Gothenburg, Sweden (1)
Department of Medical Biochemistry and Cell Biology, Instititute of Biomedicine at the Sahlgrenska Academy, University of Gothenburg, Sweden. (1)
Department of Molecular & Cellular Physiology Stanford University School of Medicine (1)
Department of Molecular Microbiology, Bruce and Ruth Rappaport Faculty of Medicine, Technion-Israel Institute of Technology, Haifa, Israel. (1)
Department of Molecular and Cellular Pharmacology University of California San Francisco (1)
Department of Pathology, Medical University of Graz, 8010 Graz, Austria Institute of Chemical Technologies and Analytics, Technische Universität Wien, 1060 Vienna, Austria (1)
Department of Pharmacy and Biomedical Sciences, La Trobe University (1)
Departments of Pediatrics and Systems Pharmacology and Translational Therapeutics, the Raymond and Ruth Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA. (1)
Dept. of Medical Biochemistry and Cell Biology Institute of Biomedicine The Sahlgrenska Academy at the University of Gothenburg SWEDEN (1)
Dept. of Physiology, biophysics, and systems biology The Ruth and Bruce Rappaport Faculty of Medicine Technion- Israel Institute of Technology (1)
Discipline of Physics, Chemistry and Earth Sciences, The University of Adelaide, South Australia, Australia (1)
Discipline of Physics, Chemistry, and Earth Sciences. The University of Adelaide (1)
Faculty of Technical Chemistry, Institute of Chemical Technologies and Analytics, Technische Universität Wien (TU Wien), 1060 Vienna, Austria; Diagnostic and Research Institute of Pathology, Medical University of Graz, 8010 Graz, Austria; BiotechMed-Graz, 8010 Graz, Austria; (1)
Faculty of Technical Chemistry, Institute of Chemical Technologies and Analytics, Technische Universität Wien (TU Wien), 1060 Vienna, Austria; Diagnostic and Research Institute of Pathology, Medical University of Graz, 8036 Graz, Austria; BiotechMed-Graz, 8010 Graz, Austria; (1)
Faculty of Technical Chemistry, Institute of Chemical Technologies and Analytics, Technische Universität Wien (TU Wien), 1060 Vienna, Austria; Diagnostic and Research Institute of Pathology, Medical University of Graz, 8036 Graz, Austria; BiotechMed-Graz, Omics Center Graz, 8010 Graz, Austria; (1)

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Real-time quantitative PCR analysis of human astrocytomas

Pediatric astrocytomas, a leading cause of death associated with cancer, are the most common primary central nervous system tumors found in children. Most studies of these tumors focus on adults, not children. We examined the global protein and microRNAs expression pattern by 2D SDS-PAGE, mass spect...

ORGANISM(S): Homo sapiens

2013-02-12 | E-GEOD-44280 | biostudies-arrayexpress

A data-driven approach to preprocessing Illumina 450K methylation array data

Background: As the most stable and experimentally accessible epigenetic mark, DNA methylation is of great interest to the research community. The landscape of DNA methylation across tissues, through development and in disease pathogenesis is not yet well characterised. Thus there is a need for rapid...

ORGANISM(S): Homo sapiens

2013-01-24 | E-GEOD-43414 | biostudies-arrayexpress

Ecological structure and function in a restored versus natural salt marsh.

Not available

S-EPMC5736197 | biostudies-literature

Catalytic-dependent and -independent roles of TET3 in the regulation of specific genetic programs during neuroectoderm specification.

Not available

S-EPMC10997653 | biostudies-literature

Modulation of transcriptional and inflammatory responses in murine macrophages by the Mycobacterium tuberculosis mammalian cell entry (Mce) 1 complex.

The outcome of many infections depends on the initial interactions between agent and host. Aiming at elucidating the effect of the M. tuberculosis Mce1 protein complex on host transcriptional and immunological responses to infection with M. tuberculosis, RNA from murine macrophages at 15, 30, 60 min...

ORGANISM(S): Mus musculus

2011-10-05 | E-TABM-1170 | biostudies-arrayexpress

Stomach cancer risk after treatment for hodgkin lymphoma.

Not available

S-EPMC3770865 | biostudies-literature

Malignant haemangiopericytomas of omentum presenting as left inguinal hernia: A case report.

Not available

S-EPMC7846890 | biostudies-literature

From Extra Virgin Olive Oil to Refined Products: Intensity and Balance Shifts of the Volatile Compounds versus Odor.

Not available

S-EPMC7321329 | biostudies-literature

Transcription profiling of mouse subspecies and their F1 hybrids for 3 tissues (brain, liver, testis)

We have studied different subspecies of the house mouse (M. m. musculus, M. m. domesticus and M. m. castaneus) and their reciprocal F1 hybrids to estimate the within-locus mode of inheritance for subspecies differences in gene expression in three tissues (brain, liver, testis) of male mice. This stu...

ORGANISM(S): Mus musculus musculus x Mus musculus castaneus

2008-06-16 | E-GEOD-9338 | biostudies-arrayexpress

Alternative and Experimental Therapies of Mycobacterium abscessus Infections.

Not available

S-EPMC7555341 | biostudies-literature

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