Ruth R R - OmicsDI

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Unknown (749)
Transcriptomics (159)
Proteomics (80)
Genomics (43)
Metabolomics (17)
Models (5)
Genomic (2)
Other (2)
Multiomics (1)

Organisms

Homo sapiens (147)
Mus musculus (58)
Rattus norvegicus (10)
Arabidopsis thaliana (8)
Zea mays (7)
Drosophila melanogaster (5)
Ovis aries (5)
Sus scrofa (3)
Dichelobacter nodosus (2)
Cervus elaphus (2)
Saccharomyces cerevisiae (2)
Methanothermobacter marburgensis str. Marburg (1)
Methanothermobacter thermautotrophicus (1)
Methanothermobacter thermautotrophicus str. Delta H (1)
Helianthus annuus (1)
Biomphalaria glabrata (1)
Mus musculus domesticus (1)
synthetic construct (1)
Anopheles gambiae (1)
Bos taurus (1)
Glycine max (1)
330 (1)
Acetobacterium woodii (1)
Alnus glutinosa (1)
Betula pendula (1)
Corylus avellana (1)
Escherichia coli (1)
Felis catus (1)
Gallus gallus (1)

Repository

biostudies-arrayexpress (166)
pride (55)
EGA (36)
MassIVE (18)
MetaboLights (16)
PanoramaPublic (4)
BioModels (3)
dbGaP (2)
GPMDB (2)
PeptideAtlas (2)
Cell Collective (1)
FAIRDOMHub (1)
GNPS (1)
jPOST (1)

Tissue

Cell culture (9)
Liver (5)
Lung (5)
Hepatocyte (4)
Fibroblast (3)
Heart (3)
Neutrophil (3)
Blood (2)
Cell suspension culture (2)
HEK-293T cell (2)
Oral mucosa (2)
Permanent cell line cell (2)
Placenta (2)
Primary cell (2)
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Blood platelet (1)
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Colon (1)
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Skeletal muscle (1)
T cell (1)

Disease

Normal (2)
Not Available (2)
Moderate (1)
Refractory cytopenia with multilineage dysplasia and ringed sideroblasts (1)
Melanoma (1)
Tumor (1)
Melanoma (1)
Abnormal inflammatory response (1)
Anosmia (1)
Cardiovascular system disease (1)
Colon cancer (1)
Human immunodeficiency virus infectious disease (1)
Hyposmia (1)
Laryngeal disease (1)
Lung adenocarcinoma (1)
Lung cancer (1)
Lung squamous cell carcinoma (1)
Malignant neoplasm of ovary (1)
Muscular atrophy (1)
Neuroblastoma (1)
Non-small cell lung carcinoma (1)
Pancreatic ductal adenocarcinoma (1)
Severe COVID-19 (1)

Technology Type

Mass Spectrometry (55)
Shotgun proteomics (40)
Mass spectrometry (12)
Affinity purification coupled with mass spectrometry proteomics (9)
Bottom-up proteomics (7)
Data-independent acquisition (7)
SWATH MS (4)
Data-dependent acquisition (3)
Gel-based experiment (3)
Illumina HiSeq 2000 (2)
Mass spectrometry assay (2)
NMR spectroscopy (2)
Complete Genomics (COMPLETE_GENOMICS) (1)
ILLUMINA, Illumina HiSeq 2000 (1)
ILLUMINA, Illumina HiSeq 4000, Illumina HiSeq 2500 (1)
Illumina 1.2M, Affymetrix 6.0, Affymetrix 6.0 - CHIAMO (1)
Illumina HumanExome-12v1_A-GenCall, zCall, GenoSNP, - Illuminus (1)

Instrument Platform

Q Exactive (7)
TSQ Quantiva (6)
Agilent High resolution C scanner (4)
Illumina NovaSeq 6000 (4)
LTQ Orbitrap Velos (3)
Illumina HiSeq 2500 (2)
Illumina HiSeq 4000 (2)
NextSeq 500 (2)
Instrument (2)
LTQ Orbitrap Elite (2)
Orbitrap Exploris 480 (2)
Orbitrap Fusion (2)
Linux Bash Scripting (1)
NEBNext Ultra II Directional RNA Library Prep (1)
Qiagen RNeasy Mini Kit (1)
With L-glutamine supplemented with 10% fetal bovine serum (FBS) (Gibco) and 1% penicillin-streptomycin (10,000 units/mL penicillin and 10 mg/mL streptomycin) (Gibco). (1)
Illumina HiSeq 4000 system (1)
Agilent SureScan High Resolution scanner (1)
Ilumina HiScan H166 (1)
DNA Microarray Scanner (Model G2505C, Agilent Technologies) (1)
Illumina iScan (1)
G2565BA DNA microarray scanner [Agilent] (1)
Ion Torrent PGM (1)
R (1)
LCMS-IT-TOF (1)
4000 QTRAP (1)
Exactive Plus (1)
Impact II (1)
Orbitrap Fusion Lumos (1)
Q Exactive HF (1)

Publication Date

2014 (20)
2010 (20)
2015 (19)
2012 (19)
2021 (18)
2013 (18)
2011 (18)
2023 (17)
2020 (17)
2008 (14)
2022 (13)
2016 (11)
2024 (10)
2009 (9)
2026 (8)
2025 (8)
2019 (6)
2018 (6)
2007 (6)
2017 (4)
2004 (2)

UNIPROT ID/AC

A0A4W9 (2)
A1L347 (2)
A2A543 (2)
A2A7S7 (2)
A2ACL9 (2)
A2AP31 (2)
A2AQL0 (2)
A2AQR0 (2)
A2ASZ8-4 (2)
A2ATZ8 (2)
A2AWI7 (2)
A2RS22 (2)
A2RSV8 (2)
A3KML5 (2)
A3R3Q8 (2)
A3R404 (2)
A6ZI44 (2)
B0V2N1 (2)
B1ATI0 (2)
B1ATS4 (2)
B1AWD8 (2)
B1AWN6 (2)
B2MWM9 (2)
B2RQX4 (2)
B2RQY8 (2)
B2RRX1 (2)
B2RRX2 (2)
B2RS41 (2)
B2RSH2 (2)
B2RSY3 (2)

ENSEMBL ID

ENSMUSP00000141097 (2)
ENSMUSG00000072849 (1)
ENSMUSG00000098557 (1)

CHEBI ID

CHEBI:10049 (3)
CHEBI:10066 (3)
CHEBI:10067 (3)
CHEBI:10246 (3)
CHEBI:10261 (3)
CHEBI:10489 (3)
CHEBI:10491 (3)
CHEBI:10492 (3)
CHEBI:10493 (3)
CHEBI:10494 (3)
CHEBI:10495 (3)
CHEBI:10497 (3)
CHEBI:10499 (3)
CHEBI:10500 (3)
CHEBI:10529 (3)
CHEBI:10530 (3)
CHEBI:10531 (3)
CHEBI:10532 (3)
CHEBI:10533 (3)
CHEBI:10745 (3)
CHEBI:10866 (3)
CHEBI:10888 (3)
CHEBI:10925 (3)
CHEBI:10966 (3)
CHEBI:10986 (3)
CHEBI:11033 (3)
CHEBI:11063 (3)
CHEBI:11186 (3)
CHEBI:11192 (3)
CHEBI:11195 (3)

Metabolite Name

Adenosine (7)
Alanine (7)
Adenine (6)
Betaine (6)
Carnitine (6)
Choline (6)
Glucose (6)
Glycine (6)
Hypoxanthine (6)
Inosine (6)
Lactate (6)
Leucine (6)
Threonine (6)
Uridine (6)
Xanthosine (6)
1-linoleoyl-GPC (18:2) (5)
1-methylhistidine (5)
1-methylnicotinamide (5)
1-palmitoyl-2-oleoyl-GPC (16:0/18:1) (5)
1-palmitoyl-GPC (16:0) (5)
1-palmitoyl-GPE (16:0) (5)
1-palmitoyl-GPI (16:0) (5)
1-stearoyl-2-arachidonoyl-GPC (18:0/20:4) (5)
1-stearoyl-2-arachidonoyl-GPE (18:0/20:4) (5)
1-stearoyl-2-oleoyl-GPC (18:0/18:1) (5)
1-stearoyl-2-oleoyl-GPE (18:0/18:1) (5)
2'-deoxyuridine (5)
2-hydroxyglutarate (5)
2-hydroxystearate (5)
3-aminoisobutyrate (5)

IsPrivate

False (3)

Submitter Keywords

FROG (3)

Modelling Approach

Constraint-based model (3)

Study type

Transcription profiling by array (106)
RNA-seq of coding RNA (12)
Methylation profiling by array (9)
Unknown experiment type (7)
RNA-seq of non coding RNA (5)
Genotyping by array (4)
ChIP-seq (4)
Animal - One-color microarray (3)
Methylation profiling by high throughput sequencing (3)
Comparative genomic hybridization by array (2)
RNA-seq of coding RNA from single cells (2)
Human - Two-color microarray (1)
ChIP-chip by tiling array (1)
Cell line - High-throughput sequencing (1)
Transcription profiling by RT-PCR (1)
MicroRNA profiling by high throughput sequencing (1)
Ribo-seq (1)
Other (1)
MicroRNA profiling by array (1)
RNA-seq of total RNA (1)

Release Date

2022 (98)
2025 (90)
2023 (90)
2021 (84)
2024 (61)
2019 (61)
2018 (57)
2020 (55)
2017 (43)
2016 (43)
2015 (43)
2014 (32)
2013 (28)
2010 (28)
2012 (26)
2011 (23)
2008 (16)
2009 (13)
2026 (13)
2007 (7)
2004 (3)
2002 (1)

Lab affiliation

Austrian Centre of Industrial Biotechnology (ACIB), Petersgasse 14, 8010 Graz, Austria; Medical University of Graz, Institute of Pathology, Research Unit Functional Proteomics and Metabolic Pathways, Stiftingtalstrasse 24, 8010 Graz, Austria; Omics Center Graz, BioTechMed-Graz, Stiftingtalstrasse 24, 8010 Graz, Austria. (3)
Research and Diagnostic Institute of Pathology, Medical University of Graz, Stiftingtalstrasse 6, 8010 Graz, Austria; Faculty of Technical Chemistry, Institute of Chemical Technologies and Analytics, Technische Universität Wien, Getreidemarkt 9/164, 1060 Vienna, Austria (3)
Centre for Inflammation Research, Institute for Regeneration and Repair, University of Edinburgh, Edinburgh, UK. (2)
Full Professor for Analytical Chemistry Institute of Chemical Technologies and Analytics TU Wien Getreidemarkt 9/E164 A-1060 Vienna Austria (2)
Bio-molecular sciences, The Weizmann Institue of Science, Israel (1)
Celleluar and Molecular Pharmacology, UCSF (1)
Cellular and Molecular Pharmacology, UCSF, San Francisco, CA (1)
Center for Pathophysiology, Infectiology and Immunology, Medical University of Vienna, 1090 Vienna, Austria. (1)
Department of Cellular and Molecular Pharmacology, University of California, San Francisco, CA 94158, USA (1)
Department of Cellular and Molecular Pharmamcology, UCSF (1)
Department of Human Biology, School of Nutrition and Translational Research in Metabolism (NUTRIM), Maastricht University, Maastricht, the Netherlands (1)
Department of Human Molecular Genetics and Biochemistry, Sackler Faculty of Medicine and Sagol School of Neurosciences, Tel Aviv University, Tel Aviv 69978, Israel (1)
Department of Molecular & Cellular Physiology Stanford University School of Medicine (1)
Department of Molecular and Cellular Pharmacology University of California San Francisco (1)
Department of Pathology, Medical University of Graz, 8010 Graz, Austria Institute of Chemical Technologies and Analytics, Technische Universität Wien, 1060 Vienna, Austria (1)
Departments of Pediatrics and Systems Pharmacology and Translational Therapeutics, the Raymond and Ruth Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA. (1)
Faculty of Technical Chemistry, Institute of Chemical Technologies and Analytics, Technische Universität Wien (TU Wien), 1060 Vienna, Austria; Diagnostic and Research Institute of Pathology, Medical University of Graz, 8010 Graz, Austria; BiotechMed-Graz, 8010 Graz, Austria; (1)
Faculty of Technical Chemistry, Institute of Chemical Technologies and Analytics, Technische Universität Wien (TU Wien), 1060 Vienna, Austria; Diagnostic and Research Institute of Pathology, Medical University of Graz, 8036 Graz, Austria; BiotechMed-Graz, 8010 Graz, Austria; (1)
Faculty of Technical Chemistry, Institute of Chemical Technologies and Analytics, Technische Universität Wien (TU Wien), 1060 Vienna, Austria; Diagnostic and Research Institute of Pathology, Medical University of Graz, 8036 Graz, Austria; BiotechMed-Graz, Omics Center Graz, 8010 Graz, Austria; (1)
Faculty of Technical Chemistry, Institute of Chemical Technologies and Analytics, Technische Universität Wien, Getreidemarkt 9/164, 1060 Vienna, Austria (1)
Forschungslabor Fetale Programmierung, Klinik und Poliklinik für Kinder- und Jugendmedizin, Uniklinik Köln, Gebäude 44a, Robert-Koch Str. 16, 50931 Köln (1)
Full Professor for Analytical Chemistry Institute of Chemical Technologies and Analytics TU Wien Getreidemarkt 9/E164 A-1060 Vienna Austria (1)
Full Professor for Analytical Chemistry Institute of Chemical Technologies and Analytics TU Wien Getreidemarkt 9/E164 A-1060 Vienna Austria (1)
Full Professor for Analytical Chemistry Institute of Chemical Technologies and Analytics TU Wien Getreidemarkt 9/E164 A-1060 Vienna Austria (1)
Full Professor for Analytical Chemistry Vienna University of Technology Institute of Chemical Technologies and Analytics Getreidemarkt 9/E164 A-1060 Vienna Austria (1)
Full Professor for Analytical Chemistry Vienna University of Technology Institute of Chemical Technologies and Analytics Getreidemarkt 9/E164 A-1060 Vienna Austria Associate Professor for Biochemistry Medical University of Graz Diagnostic and Research Institute of Pathology Stiftingtalstrasse 24 A-8010 Graz Austria (1)
Institute of Chemical Technologies and Analytics, Faculty of Technical Chemistry, Vienna University of Technology—TU Wien, Vienna, Austria; Institute of Pathology, Diagnostic and Research Center for Molecular BioMedicine, Medical University of Graz, Graz, Austria; Omics Center Graz, BioTechMed-Graz, Graz, Austria (1)
Institute of Chemical Technologies and Analytics, TU Wien, Getreidemarkt 9, 1060 Vienna, Austria; Research and Diagnostic Institute of Pathology, Medical University of Graz, Stiftingtalstraße 6, 8036, Graz, Austria (1)
Institute of Chemical Technologies and Analytics, Technische Universität Wien, Getreidemarkt 9, 1060 Vienna, Austria; Research and Diagnostic Institute of Pathology, Medical University of Graz, Stiftingtalstraße 6, 8036, Graz, Austria (1)
Institute of chemical technologies and Analytics TU-Wien (1)

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Evaluation of the pharmacokinetic interaction between lesogaberan (AZD3355) and esomeprazole in healthy subjects.

Not available

S-EPMC3586101 | biostudies-literature

Synovial fibroblasts assume distinct functional identities and secrete R-spondin 2 in osteoarthritis.

Not available

S-EPMC9972892 | biostudies-literature

Comparing actigraphy and diary to measure daily and average sleep in firefighters: a Bland-Altman analysis.

Not available

S-EPMC10985296 | biostudies-literature

LONGO: an R package for interactive gene length dependent analysis for neuronal identity.

Not available

S-EPMC6022641 | biostudies-literature

One-minute heart rate variability - an adjunct for airway obstruction identification.

Not available

S-EPMC6328920 | biostudies-literature

Microarray analysis of gene expression in rams experimentally infected with a rough virulent strain of Brucella ovis (acute phase)

The study demonstrated the gene expression through microarray analysis of total mRNA in rams experimentally infected with a rough (R) virulent strain of Brucella ovis in reproductive organs (epididymus, testicles, ampolae, vesicular glands, bulbourethral glands) and a pool of lymph nodes (inguinal a...

ORGANISM(S): Ovis aries

2012-02-08 | E-GEOD-35612 | biostudies-arrayexpress

Microarray analysis of gene expression in rams experimentally infected with a rough virulent strain of Brucella ovis (chronic 1 phase)

ORGANISM(S): Ovis aries

2012-02-08 | E-GEOD-35613 | biostudies-arrayexpress

Microarray analysis of gene expression in rams experimentally infected with a rough virulent strain of Brucella ovis (chronic 2 phase)

ORGANISM(S): Ovis aries

2012-02-08 | E-GEOD-35614 | biostudies-arrayexpress

Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos

Soybean (Glycine max) seeds are an important source of seed storage compounds, including protein, oil, and sugar used for food, feed, chemical, and biofuel production. We assessed detailed temporal transcriptional and metabolic changes in developing soybean embryos to gain a systems biology view of ...

ORGANISM(S): Glycine max

2013-12-13 | E-GEOD-46153 | biostudies-arrayexpress

Identification of megakaryoblastic leukemia-1 (Mkl1) target genes in 4T1 mammary carcinoma cells

The present study was designed to identify Mkl1 target genes whose expression requires either the B1 site of Mkl1 and serum response factor (SRF), respectively, or the SAP domain of Mkl1. For this purpose, we obtained the transcriptomes of four stable 4T1 cell lines that either overexpress full leng...

ORGANISM(S): Mus musculus

2016-07-15 | E-GEOD-59459 | biostudies-arrayexpress

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