S.cerevisiae - OmicsDI

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Genomics (193)
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Unknown (93)
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Organisms

Saccharomyces cerevisiae (150)
Schizosaccharomyces pombe (39)
Sinorhizobium meliloti BL225C (39)
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Saccharomyces cerevisiae (39)
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Organisms

Saccharomyces cerevisiae (112)
Saccharomyces cerevisiae W303 (4)
Saccharomyces cerevisiae BY4741 (2)
Saccharomyces cerevisiae S288C (2)
Homo sapiens (2)
Saccharomyces cerevisiae S96 x YJM789 (1)
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Repository

ENA (163)
biostudies-arrayexpress (88)
geo (61)
pride (39)
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Tissue

Cell culture (3)
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Disease

Disease free (2)
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Technology Type

Mass Spectrometry (39)
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Instrument Platform

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UNIPROT ID/AC

Q00764 (15)
P31688 (15)
P33401 (15)
P37012 (15)
P32861 (15)
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P06776 (3)
P28239 (3)
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P53037 (2)

CHEBI ID

CHEBI:16551 (21)
CHEBI:16027 (21)
CHEBI:17754 (21)
CHEBI:30031 (21)
CHEBI:16236 (21)
CHEBI:15343 (21)
CHEBI:15361 (21)
CHEBI:15422 (21)
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CHEBI:28602 (20)
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CHEBI:16108 (20)
CHEBI:18021 (20)
CHEBI:4167 (19)
CHEBI:15978 (16)
CHEBI:46398 (14)
CHEBI:16077 (14)
CHEBI:18283 (14)
CHEBI:30089 (14)
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CHEBI:18066 (14)
CHEBI:28087 (8)

First Public Date

2014 (37)
2021 (16)
2020 (14)
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2019 (13)
2024 (11)
2015 (11)
2017 (8)
2022 (7)
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2013 (6)
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2016 (3)
2012 (1)

Modelling Approach

Ordinary differential equation model (20)
Petri net (1)
Constraint-based model (1)

Lab affiliation

Institute of Biochemistry and Molecular Biology, Albert-Ludwigs-University of Freiburg (1)
Bioanalytical Mass Spectrometry Group, Max-Planck Institute for Multidisciplinary Sciencies, Goettingen, Germany; Institue for Clinical Chemistry, University Medical Center Goettingen, Goettingen, Germany (1)
Institut für Biochemie FB08, B050 Justus-Liebig-Universität Gießen Heinrich-Buff-Ring 17 35392 Gießen Germany (1)
MRC London Institute of Medical Sciences Hammersmith Hospital Campus Du Cane Road, London, W12 0NN United Kingdom (1)
University of California, San Diego Proteomics Mass Spectrometry Depertment (1)
Henning Urlaub: Bioanalytical Mass Spectrometry Group, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany; Bioanalytics, Institute for Clinical Chemistry University Medical Center Göttingen, Göttingen, Dirk Goerlich:Department of Cellular Logistics, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany; (1)
Institute of Pharmacy and Molecular Biotechnology (IPMB), Heidelberg University (1)
Biochemistry Center Heidelberg, University of Heidelberg (1)
Department of Chemistry, Duke University, Durham, NC, United States (1)
Institute of Aerospace Medicine German Aerospace Center (DLR) Linder Höhe 51147 Cologne, Germany Phone: +49-2203-6011-277 Email: boris.pfander@dlr.de & Institute for Genome Stability in Ageing and Disease University of Cologne CECAD Research Center Joseph-Stelzmann-Str. 26 50931 Cologne, Germany Email: bpfander@uni-koeln.de & Max-Planck Institute of Biochemistry, Am Klopferspitz 18 82152 Martinsried, Germany Phone:+49-89-8578-3050 Fax: +49-89-8578-2454, Email: bpfander@biochem.mpg.de (1)
Sorbonne Universités - UPMC Univ Paris 6 - UMR7238, Laboratoire de biologie computationnelle et quantitative, F-75006 PARIS, France (1)
Proteomics Laboratory, The Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade, Parkville, Melbourne, Victoria 3052, Australia (1)
Cambridge Centre for Proteomics, Department of Biochemistry, University of Cambridge, Cambridge, U.K. (1)
Biochemistry Center Heidelberg University of Heidelberg Germany (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
Cell Cycle and Genome Stability Group. Institute of Functional Biology and Genomics (IBFG). Spanish National Research Council (CSIC). University of Salamanca (USAL). C/ Zacarías González 2. Salamanca 37007. SPAIN (1)
ZBS6, Proteomics and Spectroscopy, Robert Koch-Institute (1)
Cambridge Centre for Proteomics, Department of Biochemistry, University of Cambridge, UK (1)
Professor, Department of Molecular Biosciences, University of South Florida (1)
Institut de Recherches Cliniques de Montréal Department of Biochemistry, University of Montreal Department of Medicine, Division ofExperimental Medicine (1)
Medical Protein Chemistry (1)
Centro Andaluz de Biología Molecular y Medicina Regenerativa (CABIMER), Universidad de Sevilla-CSIC-Universidad Pablo de Olavide, Seville, Spain Departamento de Genética, Facultad de Biología, Universidad de Sevilla, Seville, Spain (1)
Institute of Medical Microbiology, University Zurich, Switzerland (1)
Department of Pharmacology, University of North Carolina at Chapel Hill (1)
Genetics and Complex Diseases Harvard School of Public Health 677 Huntington Ave Boston, MA 02115 (1)
Dept. of Biology University of Fribourg Chemin du Musee 10 1700 Fribourg Switzerland (1)
Institute of Molecular Biology (IMB), Ackermannweg 4, 55128 Mainz (1)
Chair of Molecular Biology Institute of Cellular and Molecular Biology Estonia (lab head) (1)
University of Washington Department of Genome Sciences Seattle, WA (1)
Omics Center Graz Research Unit "Functional Proteomics and Metabolic Pathways" Institute of Pathology Medical University Graz, Austria (1)

IsPrivate

False (28)

Model Flag

Non Kinetic (7)

Classification

fungi (1)

Modification

45.029395 (1)
56.026215 (1)
42.010565 (1)
15.994915 (1)
58.005479 (1)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (29)
ChIP-seq (12)
RNA-seq of coding RNA (10)
Unknown experiment type (8)
ChIP-chip by tiling array (8)
Comparative genomic hybridization by array (7)
ChIP-chip by array (4)
Other (4)
Transcription profiling by tiling array (2)
MNase-seq (1)
Cell line - High-throughput sequencing (1)
DNA-seq (1)
Proteomic profiling by array (1)

Release Date

2013 (31)
2010 (19)
2015 (14)
2016 (13)
2014 (13)
2006 (9)
2011 (8)
2018 (7)
2012 (7)
2004 (6)
2026 (5)
2021 (5)
2019 (5)
2008 (5)
2002 (5)
2001 (5)
2000 (4)
2023 (3)
2017 (3)
2009 (3)
2005 (3)
2007 (2)
2003 (2)
2025 (2)
2022 (1)
2020 (1)

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Expression data from S.cerevisiae treated with tunicamycin

PRJNA530518 | ENA

Transcriptome profiling of Aim29-knockout S.cerevisiae cells

PRJNA954406 | ENA

ChIPseq experiments for chromatin modification in S.cerevisiae upon truncations of CTR9

PRJNA725913 | ENA

Investigation of RNA-dependent proteins in the yeasts S.pombe and S.cerevisiae

Investigation of RNA-dependent proteins in the yeasts S.pombe and S.cerevisiae by using density gradient ultracentrifugation combined with mass spectrometry. The data consisted of three independent biological replicates of the corresponding wild-type strains. The analysis includes both a control gro...

ORGANISM(S): Schizosaccharomyces pombe 927 Saccharomyces cerevisiae (Baker's yeast)

2026-07-23 | PXD058607 | Pride

Transcriptome profiling time course of ZPR1-depleted S.cerevisiae cells

PRJNA875287 | ENA

Transcriptome profiling of Aim29-knockout S.cerevisiae cells

The aim of this study was to gain insight into the transcriptome on knockout of eukaryotic gene AIM29 in S.cerevisiae.

ORGANISM(S): Saccharomyces cerevisiae W303

2023-04-16 | GSE229425 | GEO

S.cerevisiae INO80 is required for promoter proximal nucleosome remodeling.

During transcription, nucleosomes are evicted from regulatory and coding regions yet chromatin structure is stable. Restoration of chromatin structure involves concerted action of chromatin modifying activities. Our analysis demonstrates a genome wide function of the INO80 remodeling complex for sta...

ORGANISM(S): Saccharomyces cerevisiae

2016-12-24 | E-MTAB-1810 | biostudies-arrayexpress

DIA-SPROX E.coli and S.cerevisiae Midpoints

The stability of proteins from rates of oxidation (SPROX) technique is a mass spectrometry-based approach for making protein folding stability measurements on the proteomics scale. The development and application of SPROX, to date, has involved the use of quantitative bottom-up proteomics and data d...

ORGANISM(S): Escherichia coli Saccharomyces cerevisiae (Baker's yeast)

2026-03-03 | PXD066697 | Pride

Sequencing of S.uvarum x S.cerevisiae hybrid and its S.cerevisiae parental.

PRJNA472868 | ENA

ChIPseq experiments for chromatin modification in S.cerevisiae upon truncations of CTR9

ORGANISM(S): Saccharomyces cerevisiae

2021-04-29 | GSE173534 | GEO

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