S9 - OmicsDI

Show results for

Unknown (599)
Genomics (101)
Transcriptomics (71)
Proteomics (51)
Metabolomics (20)
Other (3)
Models (1)

Organisms

Homo sapiens (55)
Schizophyllum commune H4-8 (42)
Mycobacterium tuberculosis SP7 (42)
Mycobacterium tuberculosis SP10 (42)
Mycobacterium tuberculosis SP13 (42)
Mycobacterium tuberculosis SP22 (42)
Chlamydomonas reinhardtii (42)
Enterococcus mundtii CRL35 (42)
Oncorhynchus tshawytscha (42)
Pseudomonas canadensis (42)
Influenza A virus (A/California/04/2009(H1N1)) (42)
Pseudomonas aeruginosa PAO1H2O (42)
Human alphaherpesvirus 1 strain 17 (42)
Mycobacterium tuberculosis SP1 (42)
Marchantia polymorpha subsp. ruderalis (42)
Methylocystis sp. (42)
Exiguobacterium sp. SH31 (42)
Palaemonetes sp. common grass shrimp associated circular virus (42)
Amaranthus tricolor (42)
Spirochaeta sp. ELBA (42)
Acipenser sturio (42)
Mus musculus (10)
Drosophila melanogaster (4)
Danio rerio (2)
Rattus norvegicus (2)
Xenopus laevis (1)
Apis mellifera scutellata (1)
Cucumis sativus (1)
Brassica juncea (1)
Saccharomyces cerevisiae (1)

Organisms

Homo sapiens (28)
Mus musculus (8)
marine metagenome (7)
Shiraia bambusicola (3)
soil metagenome (3)
Borreliella burgdorferi (2)
Solanum lycopersicum (2)
Sphingomonas radiodurans (1)
Hoylesella timonensis S9-PR14 (1)
Clostridiales bacterium S9 HS-16 (1)
Anaerococcus sp. S9 PR-5 (1)
Pseudovibrio sp. POLY-S9 (1)
Slackia sp. S9 HS-10 (1)
Olsenella sp. S9 HS-6 (1)
Clostridiales bacterium S9 PR-1 (1)
Burkholderia seminalis S9 (1)
Stappia sp. 22II-S9-Z10 (1)
Pseudomonas sp. S9 (1)
Deinococcus sp. S9 (1)
Salipaludibacillus aurantiacus (1)
Pseudomonas poae (1)
Cercospora sojina S9 (1)
Oceanihabitans sediminis (1)
Castellaniella sp. S9 (1)
Delphinium anthriscifolium (1)
Alcaligenes nematophilus (1)
Campylobacter coli (1)
Flavobacterium psychrophilum (1)
Streptomyces sp. (1)
Streptococcus thermophilus (1)

Repository

ENA (96)
biostudies-arrayexpress (50)
pride (42)
geo (23)
MetaboLights (16)
MassIVE (9)
EGA (3)
GNPS (3)
GPMDB (2)
BioModels (1)
iProX (1)
NODE (1)

Tissue

Liver (11)
Hepatocyte (7)
Blood plasma (5)
Cell culture (5)
Epithelial cell (3)
Plant cell (2)
Blood serum (2)
Liver S9 fraction (1)
Seed coat (1)
Prostate epithelium cell (1)
Coral nubbin (1)
Bone (1)
Seed (1)
Stem (1)
Bladder (1)
Brain (1)
Cell suspension culture (1)
Leaf (1)
Lung (1)
Blood cell (1)

Disease

Disease free (6)
Bacterial sepsis (3)
Not Available (2)
Critical COVID-19 (2)
Severe COVID-19 (1)
Prostate adenocarcinoma (1)
Type 2 diabetes mellitus (1)
Breast cancer (1)

Technology Type

Mass Spectrometry (42)
Shotgun proteomics (25)
Mass spectrometry (13)
Bottom-up proteomics (7)
Data-independent acquisition (5)
Data-dependent acquisition (4)
SWATH MS (3)
SRM/MRM (3)
NMR spectroscopy (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Mass spectrometry assay (1)
Top-down proteomics (1)
Affinity purification coupled with mass spectrometry proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (7)
Liquid Chromatography MS - negative - reverse phase (5)
SYNAPT G2-Si (2)
6545 Q-TOF LC/MS (2)
Instrument (2)
Q Exactive Plus (2)
Direct infusion MS - negative (2)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - positive - hilic (2)
ESI-qQTOF Impact II (1)
TimsTOF fleX (1)
Q Exactive HF-X (1)
TimsTOF Pro 2 (1)
Orbitrap Exploris 240 (1)
Q Exactive (1)
MS Imaging - positive - direct infusion (1)
Liquid Chromatography MS (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Direct infusion MS - (1)
Direct infusion MS - positive (1)
Bruker (1)
MS Imaging - (1)
Gas Chromatography MS - (1)
Nuclear Magnetic Resonance (NMR) - (1)

Publication Date

2015 (31)
2013 (11)
2014 (10)
2022 (10)
2021 (10)
2023 (10)
2025 (9)
2024 (8)
2011 (7)
2010 (7)
2020 (4)
2004 (4)
2019 (4)
2016 (3)
2012 (3)
2017 (3)
2018 (3)
2026 (3)
2009 (1)

UNIPROT ID/AC

Q90W58 (1)
Q05116 (1)
P26696 (1)

CHEBI ID

CHEBI:17822 (5)
CHEBI:15428 (4)
CHEBI:26986 (4)
CHEBI:28300 (4)
CHEBI:17234 (4)
CHEBI:18186 (4)
CHEBI:15724 (3)
CHEBI:17724 (3)
CHEBI:28842 (3)
CHEBI:16196 (3)
CHEBI:16010 (3)
CHEBI:17687 (3)
CHEBI:7916 (3)
CHEBI:21547 (3)
CHEBI:15354 (3)
CHEBI:17750 (3)
CHEBI:15676 (3)
CHEBI:37024 (3)
CHEBI:16750 (3)
CHEBI:16856 (3)
CHEBI:16449 (3)
CHEBI:15741 (3)
CHEBI:6650 (3)
CHEBI:16737 (3)
CHEBI:16919 (3)
CHEBI:27266 (3)
CHEBI:16811 (3)
CHEBI:17368 (3)
CHEBI:26271 (3)
CHEBI:24898 (3)

Metabolite Name

Pantothenic acid (3)
Methionine (3)
Serine (3)
Creatinine (3)
Creatine (3)
Xanthine (3)
N-Acetylarginine (2)
PIPES (2)
CHES (2)
Lactic acid (2)
Valine (2)
N-Acetylglutamine (2)
HEPES (2)
Leucine (2)
Histidine (2)
Quinolinic acid (2)
Paraxanthine (2)
Cysteine-S-sulfate (2)
Kynurenic acid (2)
Proline betaine (2)
Allantoin (2)
N-Acetylneuraminic acid (2)
Taurocholic acid (2)
Glycocholic acid (2)
Citric acid (2)
Hippuric acid (2)
Lysine (2)
Tryptophan (2)
Tyrosine (2)
Fructose (2)

First Public Date

2014 (12)
2013 (11)
2024 (10)
2025 (9)
2017 (9)
2023 (8)
2015 (8)
2022 (7)
2018 (7)
2020 (4)
2016 (4)
2026 (3)
2021 (2)
2019 (2)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Bioanalytical Mass Spectrometry Research Group, Chemistry Department, Universite du Quebec a Montreal (UQAM), Montreal (Quebec), Canada (5)
Department of Clinical Pharmacy, University of Michigan (2)
College of Pharmacy, Research Institute of Pharmaceutical Sciences, Kyungpook National University (2)
Department of Chemistry and Chemical Biology, Harvard University (2)
Nunn Lab, University of Washington, Department of Genome Sciences, Seattle, WA USA (1)
Clinical Proteomics Medizinisches Proteom-Center Ruhr-University Bochum and Department of Anesthesiology, Intensive Care Medicine and Pain Therapy University Hospital Knappschaftskrankenhaus Bochum (1)
Bioanalytical Mass Spectrometry Research Group Chemistry Department, Université du Québec à Montréal (UQÀM) Montréal (Québec) Canada (1)
Center for Proteome Analysis, Indiana University School of Medicine, Indianapolis, IN (1)
USDA Agriculture Research Service (1)
Department of Proteomics and Signal Transduction Max-Planck-Institute of Biochemistry Am Klopferspitz 1882152 Martinsried, Germany AND Department of Biomedical Sciences, University of Padova, Via Ugo Bassi, 58/B, 35131, Padua Italy (1)
Instituto de Ciências Biomédicas, Departamento de Parasitologia, Universidade de São Paulo, USP, São Paulo, Brazil. (1)
School of Biological Sciences, Washington State University, Pullman, WA 99154, USA (1)
Medizinisches Proteom-Center, Ruhr University Bochum Clinic for Anesthesiology, Intensive Care and Pain Therapy, Knappschaft Clinics University Hospital Bochum (1)
School of Medicine, Conway Institute, University College Dublin (1)
University Medicine Greifswald Interfaculty Institute for Genetics and Functional Genomics Department of Functional Genomics ZIK-FunGene Junior Research Group Applied Proteomics Friedrich-Ludwig-Jahn-Str. 15a D-17487 Greifswald Germany Phone: +49-3834-865887 Fax: +49-3834-86795887 (1)
Clinical Proteomics, Medizinisches Proteom-Center, Ruhr-University Bochum; Department of Anesthesiology, Intensive Care Medicine and Pain Therapy, University Hospital, Knappschaftskrankenhaus Bochum (1)
Département de microbiologie et infectiologie, Faculté de médecine et des sciences de la santé, Université de Sherbrooke (1)
Functional Genomics, University Medicine Greifswald, Germany (1)
Departments of Surgery and Biomedical Sciences Cedars-Sinai Medical Center Los Angeles, CA United States of America (1)
Department of Cell Biology Blavatnik Institute at Harvard Medical School Boston, MA 02115, USA (1)
Section for GeoGenetics Globe Institute University of Copenhagen Denmark (1)
Department of Pathophysiology, Key Laboratory of Ministry of Education for Neurological Disorders, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology (1)
Division of Pharmacotherapy and Experimental Therapeutics, Eshelman School of Pharmacy, University of North Carolina at Chapel Hill, USA (1)
Gene Regulation, Stem Cells and Cancer Program Centre de Regulació Genòmica (CRG) The Barcelona Institute of Science and Technology PRBB Dr. Aiguader 88 E-08003 Barcelona Spain Tlf +34 93 316 0119 Fax +34 93 316 0099 e-mail: miguel.beato@crg.eu Secretary: Gemma Perez Tlf +34 93 316 0165 e-mail: gemma.perez@crg.eu www.crg.eu/4dgenome (1)
Institute of Biomedical Chemistry (1)
University of Greifswald, Animal Physiology and Biochemistry, Felix Hausdorff-Strasse 1, D - 17489 Greifswald, Germany (1)
NBE-DMPK Innovative BioAnalytics, Merck Serono RBM S.p.A., an affiliate of Merck KGaA, Darmstadt, Germany, Via Ribes 1, 10010 Colleretto Giacosa (TO) (1)
Technical University of Darmstadt, Clemens-Schöpf Institute of Organic Chemistry and Biochemistry, 64287 Darmstadt, Germany (1)
Baylor College of Medicine (1)
Department of Analytical Biochemistry Faculty of Science and Engineering University of Groningen (1)

IsPrivate

False (1)

Classification

bacteria (7)

Study type

Transcription profiling by array (33)
RNA-seq of coding RNA (5)
Methylation profiling by array (4)
Unknown experiment type (2)
Transcription profiling by RT-PCR (1)
Comparative genomic hybridization by array (1)
Other (1)
ChIP-seq (1)
MicroRNA profiling by array (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2015 (56)
2022 (55)
2021 (55)
2025 (48)
2023 (44)
2014 (42)
2020 (41)
2024 (38)
2013 (36)
2018 (34)
2017 (32)
2019 (31)
2016 (24)
2012 (24)
2010 (21)
2011 (20)
2009 (12)
2008 (10)
2026 (8)
2007 (8)
2002 (2)
1997 (2)
2003 (1)
2001 (1)
2000 (1)
1999 (1)
1998 (1)
1991 (1)

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Pseudomonas sp. S9 strain:S9

Pseudomonas sp. S9 genome sequencing project

PRJNA66201 | ENA

Burkholderia seminalis S9 strain:S9

Burkholderia seminalis S9 strain:S9 Genome sequencing

PRJNA76133 | ENA

Cercospora sojina S9 strain:S9

Cercospora sojina S9 strain:S9 Genome sequencing and assembly

PRJNA82175 | ENA

Deinococcus sp. S9 strain:S9

Deinococcus sp. S9 strain:S9 Genome sequencing and assembly

PRJNA525588 | ENA

Castellaniella sp. S9 strain:S9

Castellaniella sp. S9 strain:S9 Genome sequencing and assembly

PRJNA898863 | ENA

Stappia sp. 22II-S9-Z10

Stappia sp. 22II-S9-Z10 Genome Sequencing

PRJNA196740 | ENA

Shiraia bambusicola strain:S9

Shiraia bambusicola strain:S9 Raw sequence reads

PRJNA486084 | ENA

Flavobacterium psychrophilum strain:FPS-S9

Flavobacterium psychrophilum strain:FPS-S9 Genome sequencing

PRJNA645963 | ENA

Proteomic Analysis of Human Liver S9 Fraction by 2D-LC-MSMS

Liver plays a crucial role in numerous metabolic processes and therefore is the primary target of study in drug discovery and molecular toxicology. Devising an appropriate analytical strategy for an efficient analysis of the liver samples has been a major concern in proteomics. The aim of this study...

ORGANISM(S): Homo sapiens (Human)

2015-03-26 | PXD000734 | Pride

Proteomic Analysis of Rat Liver S9 Fraction by 2D-LC-MSMS

ORGANISM(S): Rattus norvegicus (Rat)

2015-03-26 | PXD000717 | Pride

2d-lc-msms Tripletof Proteinpilot Rat liver s9 fraction

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846 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

UNIPROT ID/AC

CHEBI ID

Metabolite Name

First Public Date

Modelling Approach

Lab affiliation

Tags

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Classification

Study type

Release Date

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