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MetabolomicsComprehensive evaluation of untargeted metabolomics data processing software in feature detection, quantification and discriminating marker selection (AB SCIEX TripleTOF 6600 assay)

Data analysis represents a key challenge for untargeted metabolomics studies and it commonly requires extensive processing of more than thousands of metabolite peaks included in raw high-resolution MS data. Although a number of software packages have been developed to facilitate untargeted data p...

2019-11-19 | MTBLS736 | MetaboLights
UnknownPerformance characteristics of a new hybrid quadrupole time-of-flight tandem mass spectrometer (TripleTOF 5600).
Not available
S-EPMC3138073 | biostudies-literature
ProteomicsSimulated spectral library searching on TripleTOF phosphopeptide datasets
Synthetic phosphopeptides and enriched K562 cell phosphopeptides were analyzed using a TripleTOF 6600 mass spectrometer before and after enzymatic dephosphorylation. Dephosphorylated peptides identified by X!Tandem database searching were subjected to spectral simulation of all possible single phosp...
ORGANISM(S): Homo Sapiens (human) 
2019-12-03 | PXD012433 | JPOST Repository
UnknownOptimization of TripleTOF spectral simulation and library searching for confident localization of phosphorylation sites.
Not available
S-EPMC6886777 | biostudies-literature
UnknownImmunodepletion plasma proteomics by tripleTOF 5600 and Orbitrap elite/LTQ-Orbitrap Velos/Q exactive mass spectrometers.
Not available
S-EPMC3817719 | biostudies-literature
UnknownA systematic analysis of natural α-glucosidase inhibitors from flavonoids of Radix scutellariae using ultrafiltration UPLC-TripleTOF-MS/MS and network pharmacology.
Not available
S-EPMC7076893 | biostudies-literature
ProteomicsSpermine & Spermidine TripleTOF 5600
Sample came from Hershey and ABSCIEX TripleTOF 5600 coupled with HPLC system.
ORGANISM(S): Unknown 
2022-11-21 | MSV000090757 | MassIVE
MetabolomicsRoot exudate metabolomics of PpPEPC1b-overexpressing rice under phosphate deficiency
Untargeted LC-MS/MS metabolomics of root exudate collection solution from wild-type rice (Oryza sativa L. Zhonghua 11) and three independent overexpression lines (OE8, OE15, OE33) of the elephant grass (Pennisetum purpureum) phosphoenolpyruvate carboxylase gene PpPEPC1b, grown under low phosphate (5...
2026-08-20 | MTBLS15387 | MetaboLights
Proteomics20180725 Buthelezi TripleTOF FFPE of human breast tissue
Sindisiwe Buthelezi generated these "shotgun" data in July of 2018 on a SCIEX TripleTOF 6600 at the Council for Scientific and Industrial Research in Pretoria, South Africa. The twelve Information-Dependent Acquisition experiments compared one-slide-at-a-time pressure-based paraffin removal (A1-4) ...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2019-03-15 | MSV000083581 | MassIVE
ProteomicsiTRAQ LLC-PK1 CnI - Sum of peak intensities outperforms peak area integration in iTRAQ protein expression measurement by LC-MS/MS using a TripleTOF 5600+ platform
In the field of quantitative proteomics, the Isobaric Tags for Relative & Absolute Quanti-tation (iTRAQ) technology has demonstrated efficacy for proteome monitoring despite its lack of a consensus for data handling. In this study, after peptide and protein identification, we com-pared the widesprea...
ORGANISM(S): Sus scrofa domesticus (domestic pig) 
2019-08-19 | PXD007891 | Pride
Llc pk-1 Itraq Calcineurin inhibitors 
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